ID: uc002nrc.1_intron_3_0_chr19_23453095_r.3p
GENE: AK023040(1)
chr19:23453045-23453294-


(1)
AGO2.ip
(13)
CELL-LINE
(1)
HEART
(3)
LIVER
(3)
OTHER
(1)
RRP40.ip
(2)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
AGTGAGCTGAGATCATGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCTGTCTCAAAAAAAATTATTAAAAATAAAATGTTACCCGTTGACTCTGAAATATATTGAGGGGTCTTCCCTGATGACATAAAAATGAACAAGTGTGTAAACAGTTAAAAAGTTTCTTCTCAACCTATTTTTTTTTTTTTTTTTTTTAGATGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCATTATCCCAATCTCG
...................................................................................................((((((..((((((((.(((..(((...(((((............)))))...))).....)))...))))))))..))))))....................................................................
......................................................................................87...............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR029127(GSM416756)
A549. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
.................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTATTTG...............................................2617.000.007.0010.00---------------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTTCG..................................................259.000.004.003.00-2.00-------------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTATATT...............................................267.000.004.002.00-1.00-------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTAATTG...............................................277.000.002.004.001.00--------------------
...........................................................................................TTGACTCTGAAATATAGTCA...........................................................................................................................................206.000.00-------6.00---------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTTCTTG................................................275.000.00--4.001.00-------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTTG......................................................255.000.00-4.001.00--------------------
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTTTTTAG....................................................254.000.002.001.001.00--------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTTTTTAAG.................................................304.000.003.001.00---------------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTCTAG...................................................244.000.00--3.001.00-------------------
..........................................................................................................................................................................................TTTTTTTTTTTTAGATGGAGTGG.........................................233.000.00--------3.00--------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTAAATG...............................................273.000.00-3.00---------------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTAGAAGAG.............................................283.000.00----2.00-1.00----------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTATTTG...............................................273.000.00-1.001.001.00-------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTTTTTAAG.................................................3113.001.001.001.00---1.00-----------------
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTTTTTTAG...................................................263.000.001.001.00-1.00-------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTTTTAAG..................................................303.000.001.002.00---------------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTATTAG...............................................263.000.002.001.00---------------------
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTTTTAT.....................................................242.000.001.00--1.00-------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTTCAG.................................................272.000.00-2.00---------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTTAAA.................................................272.000.001.00--1.00-------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTCTTG..................................................262.000.00--2.00--------------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTCCC....................................................232.000.00----2.00------------------
............................................................................................................................................................................AACCTATTTTTTTTTTTTTTTTTTTTAG..................................................2812.002.001.001.00---------------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTCTAG..................................................252.000.00--2.00--------------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTATCTG...............................................262.000.001.001.00---------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTATTG................................................262.000.002.00----------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTTTTTAG..................................................2912.002.002.00----------------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTTCCAG................................................272.000.001.001.00---------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTAAG.......................................................242.000.001.001.00---------------------
....................................................................................................................................................................TTCTTCTCAACCTATTTTTTTTTTTTTTTTAG......................................................322.000.00-1.001.00--------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTTCTTG................................................282.000.001.00-1.00--------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTTAAG....................................................272.000.002.00----------------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTATAC................................................252.000.00--1.00---1.00----------------
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTTTTTTAT...................................................262.000.00--1.001.00-------------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTTATTG................................................272.000.001.00-1.00--------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTTAATTG...............................................292.000.00-2.00---------------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTATTTA...............................................262.000.001.001.00---------------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTCTTT..................................................252.000.001.00-1.00--------------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTTATT.................................................262.000.001.001.00---------------------
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTTTTTTTAG..................................................2712.002.00-2.00---------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTATTT................................................262.000.001.001.00---------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTATCAG...............................................272.000.00-1.00-1.00-------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTTAG..................................................2661.831.830.170.501.000.17-------------------
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTTAGG......................................................231.000.00-----1.00-----------------
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTTTTCTAG...................................................261.000.00---1.00-------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTTCTAG................................................281.000.00-1.00---------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTAAT.......................................................241.000.001.00----------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTCAAG..................................................261.000.00--1.00--------------------
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTTTTCTTT...................................................261.000.00---1.00-------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTAAAT................................................261.000.001.00----------------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTTCCA.................................................261.000.001.00----------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTCAT...................................................251.000.001.00----------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTATT.......................................................251.000.00-1.00---------------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTAGAACG..............................................271.000.00---1.00-------------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTCCCC..................................................251.000.00----1.00------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTAT......................................................251.000.00--1.00--------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTAAG.........................................................221.000.001.00----------------------
.........................................................................................CGTTGACTCTGAAATATAGTC............................................................................................................................................211.000.00----------------1.00------
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTCCCG......................................................231.000.00------1.00----------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTAAGC................................................261.000.00----1.00------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTATTCT...............................................271.000.001.00----------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTAGTTTG..............................................281.000.00--1.00--------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTATG.....................................................261.000.001.00----------------------
........................................................................................................................................................CAGTTAAAAAGTTTCTTCTCAACCTATT......................................................................2811.001.00---------------1.00-------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTCTTT...................................................251.000.00---1.00-------------------
.............................................................................................................................................................................ACCTATTTTTTTTTTGGG...........................................................181.000.001.00----------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTTATG.................................................271.000.001.00----------------------
............................................................................................................................................................................AACCTATTTTTTTTTTTTTTTTTTTTTA..................................................281.000.00-----1.00-----------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTAGAG.................................................271.000.001.00----------------------
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTTTTTTTCGAG................................................291.000.00------1.00----------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTAGGC................................................261.000.00------1.00----------------
.........................................................................................................................................................................................................................TTGCCCAGGCTGGAGTGCATCGTC.........241.000.00------1.00----------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTATCT.........................................................231.000.00-1.00---------------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTTAAAAT...............................................281.000.00--1.00--------------------
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTTTTTTACG..................................................271.000.00---1.00-------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTTTTCTTG.................................................311.000.00---1.00-------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTTTTT....................................................2821.001.001.00----------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTAGATATTT............................................301.000.001.00----------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTCCGG..................................................261.000.00----1.00------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTTAAAA................................................281.000.00-1.00---------------------
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTTTTTTATTG.................................................281.000.001.00----------------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTAGAAGGG.............................................281.000.00----1.00------------------
.....................................................................................................................................................................................................................CTTGTTGCCCAGGCTGGAGTGCTCTG...........261.000.00--------------------1.00--
.................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTAGATC...............................................261.000.00------1.00----------------
....................................................................................................................................................................TTCTTCTCAACCTATTTTTTTTTTTTTTTTTTTAG...................................................351.000.00--1.00--------------------
............................................................................................................................................................................AACCTATTTTTTTTTTTTTTTCTTG.....................................................251.000.00--1.00--------------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTCAGG...................................................241.000.00----1.00------------------
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTTTTTGTG...................................................261.000.00----1.00------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTTTTATG..................................................301.000.00---1.00-------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTG........................................................231.000.00-1.00---------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTACG..................................................261.000.00-1.00---------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTTATT....................................................281.000.001.00----------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTCAAT......................................................221.000.00-1.00---------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTTTTTATT.................................................301.000.001.00----------------------
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTTTTAAG....................................................251.000.00--1.00--------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTATTTT...............................................271.000.00--1.00--------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTAGAAT...............................................271.000.00----1.00------------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTCCCG..................................................251.000.001.00----------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTATT.....................................................271.000.00-1.00---------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTATCA......................................................261.000.001.00----------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTCTGG..................................................261.000.00---1.00-------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTCTTC.......................................................251.000.00-----1.00-----------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTG.........................................................221.000.00---1.00-------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTAAG........................................................231.000.001.00----------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTAAGG.................................................271.000.00---1.00-------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTATTG.................................................271.000.00---1.00-------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTAAAA................................................261.000.001.00----------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTAAT..................................................261.000.00-1.00---------------------
....................................................................................................................................................................TTCTTCTCAACCTATTTTTTTTTTTTTTTTTTAT....................................................341.000.001.00----------------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTTCGG.................................................261.000.00----1.00------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTTAAGG................................................281.000.00-1.00---------------------
............................................................................................................................................................................AACCTATTTTTTTTTTTTTTTTTTTTTAAG................................................301.000.00---1.00-------------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTCTTC...................................................241.000.00-----1.00-----------------
............................................................................................................................................................................................................AGTTTCACTCTTGTTGCCCAGGCGAAG...................271.000.00----1.00------------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTATAAT...............................................261.000.00-------------------1.00---
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTACG.........................................................231.000.00-----1.00-----------------
...................................................................................................................................................................TTTCTTCTCAACCTATTTTTTTTTTTTTTTTTTG.....................................................341.000.00---1.00-------------------
.....................................................................................................................................................................TCTTCTCAACCTATTTTTTTTTTTTTTTTCTAG....................................................331.000.00---1.00-------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTAAAAT...............................................271.000.001.00----------------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTCTCC...................................................241.000.00-----1.00-----------------
..........................................................................................................................................................................................TTTTTTTTTTTTAGATGCTGC...........................................211.000.00-------------1.00---------
........................................................................................................................................TGAACAAGTGTGTAAACTCTG.............................................................................................211.000.00-----------1.00-----------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTAAAAG...............................................271.000.00---1.00-------------------
....................................................................................................................................................................................TTTTTTTTTTTTTTTTTTAGATGGAGGCC.........................................291.000.00------1.00----------------
...................................................................................................................................................................TTTCTTCTCAACCTATTTTTTTTTTTTTTTTT.......................................................3211.001.00---1.00-------------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTCCGG...................................................241.000.00-1.00---------------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTCTTA...................................................241.000.001.00----------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTTCC.....................................................271.000.00--1.00--------------------
.......................................................................................................................................................................................TTTTTTTTTTTTTTTAGATGCCAA...........................................241.000.00------1.00----------------
...................................................................................................................................................................TTTCTTCTCAACCTATTTTTTTTTTTTTAG.........................................................301.000.00--1.00--------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTTCAAG................................................281.000.00---1.00-------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTTTTTATAG................................................311.000.00-1.00---------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTCAAG......................................................221.000.00--1.00--------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTCTTT..................................................261.000.00---1.00-------------------
............................................................................................................................................................................................................................CCCAGGCTGGAGTGCATTTTCA........221.000.00------------------1.00----
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTTTTTCTTG..................................................271.000.00--1.00--------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTTAAAG................................................281.000.00--1.00--------------------
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTTTCTTG....................................................251.000.00-1.00---------------------
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTTTTTAGG...................................................261.000.00---1.00-------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTAATCA...............................................271.000.00---1.00-------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTTTTA....................................................281.000.001.00----------------------
................................................................................................................................................................................................................TCACTCTTGTTGCCCAGGCGGAC...................231.000.00----1.00------------------
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTTTTTTTCTGG................................................291.000.00----1.00------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTAACG................................................261.000.00-1.00---------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTATTT.................................................271.000.00-----1.00-----------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTAAT......................................................251.000.00-1.00---------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTTAAG....................................................281.000.001.00----------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTATACG...............................................271.000.00--1.00--------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTTACAG................................................281.000.00-1.00---------------------
............................................................................................................................................................................AACCTATTTTTTTTTTTTTTTTATTT....................................................261.000.00-1.00---------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTAATTC...............................................271.000.00-----1.00-----------------
....................................................................................................................................................................TTCTTCTCAACCTATTTTTTTTTTTTTTTCAG......................................................321.000.00--1.00--------------------
............................................................................................................................................................................AACCTATTTTTTTTTTTTTTTTTTCTG...................................................271.000.00--1.00--------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTATCA................................................261.000.00--1.00--------------------
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTTTTAAAG...................................................261.000.001.00----------------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTTATTT................................................271.000.00-1.00---------------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTCAAG...................................................241.000.00---1.00-------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTAAAGG...............................................271.000.00-----1.00-----------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTC..........................................................211.000.00-1.00---------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTTAAC.................................................271.000.00--1.00--------------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTATCAA...............................................261.000.001.00----------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTATGTT...............................................271.000.00-----1.00-----------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTTTTTA...................................................2911.001.00-1.00---------------------
....................................................................................................................................................................TTCTTCTCAACCTATTTTTTTTTTTTTTTTTTACA...................................................351.000.00-1.00---------------------
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTTTTTCGTT..................................................271.000.00----1.00------------------
............................................................................................................................................................................AACCTATTTTTTTTTTTTTTTTTTTTAC..................................................281.000.00----1.00------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTAGAAGAG.............................................291.000.00----1.00------------------
..............................................................................................................................................................................................................................CAGGCTGGAGTGCATTATCCC.......2111.001.00---------------------1.00-
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTAGAAGGG.............................................291.000.00----1.00------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTTATT.................................................271.000.001.00----------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTTAAA....................................................271.000.001.00----------------------
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTTTATG.....................................................241.000.00----1.00------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTAAG............................................................201.000.001.00----------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTTG......................................................261.000.00-1.00---------------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTCTTG..................................................251.000.00--1.00--------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTCTTC......................................................221.000.00-----1.00-----------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTAGCATT..............................................281.000.00-----1.00-----------------
...............................................................................................................................................................................CTATTTTTTTTTTTTTTTTTTTTCCAT................................................271.000.00-1.00---------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTTATTT................................................281.000.001.00----------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTAAG......................................................251.000.001.00----------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTTTTCTTT................................................281.000.00----1.00------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTAACC................................................261.000.00----1.00------------------
.............................................................................................................................................................................ACCTATTTTTTTTTTTTTTTTTTTAAG..................................................271.000.00----1.00------------------
..............................................................................................................................................................................CCTATTTTTTTTTTTTTTTTTCTAG...................................................251.000.00--1.00--------------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTAGCGGG..............................................271.000.00----1.00------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTTTTAAG..................................................2970.710.140.570.14---------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTTT......................................................2630.670.670.33----0.33-----------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTTTAAG...................................................2930.670.670.330.33---------------------
..............................................................................................................................................................................................................................CAGGCTGGAGTGCATTATCC........2020.500.50----------------------0.50
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTTTTTTAAT................................................3220.501.00---0.50-------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTTTTTTTAG................................................3220.501.00-0.50---------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTTTTTTAAG................................................3220.501.00-0.50---------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTTTTTTG..................................................2960.500.33-0.17-0.33-------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTTTTTTG..................................................3020.501.000.50----------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTTTTTTAG.................................................3060.500.330.330.17---------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTTTTTTTG.................................................3120.501.00-0.50---------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTTTTTTTCA................................................3220.501.00-0.50---------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTTTCTA...................................................2930.330.67----0.33------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTTTTTCAT...................................................2930.330.670.33----------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTTTTT....................................................2760.330.33-0.33---------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTTTTAAT..................................................2970.290.140.140.14---------------------
..........................................................................................................................................................................TCAACCTATTTTTTTTTTTTTTT.........................................................2340.250.25-----0.25-----------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTTTTTTTTG................................................3160.170.330.17----------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTTTTTTAAG................................................3160.170.330.17----------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTTTTAAA..................................................2970.140.140.14----------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTTTTGGT..................................................2970.140.140.14----------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTTTT.....................................................2670.140.14---0.14-------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTTTTAGG..................................................2970.140.140.14----------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTTTTATG..................................................2970.140.14-0.14---------------------
................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTAGATG...............................................2780.120.12----0.12------------------
...........................................................................................................................................................................CAACCTATTTTTTTTTTTTTTTTTT......................................................2590.110.11-0.11---------------------

Antisense strand
AGTGAGCTGAGATCATGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCTGTCTCAAAAAAAATTATTAAAAATAAAATGTTACCCGTTGACTCTGAAATATATTGAGGGGTCTTCCCTGATGACATAAAAATGAACAAGTGTGTAAACAGTTAAAAAGTTTCTTCTCAACCTATTTTTTTTTTTTTTTTTTTTAGATGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCATTATCCCAATCTCG
...................................................................................................((((((..((((((((.(((..(((...(((((............)))))...))).....)))...))))))))..))))))....................................................................
......................................................................................87...............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR029127(GSM416756)
A549. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
................................CTGGGTGACAGAGCGAGACTCTGTCTCACCGG.......................................................................................................................................................................................... 323.000.00----3.00------------------
..............................................................AAAAATTATTAAAAATAAAATAG..................................................................................................................................................................... 231.000.00--1.00--------------------
...............................CCTGGGTGACAGAGCGAGACTCTGTGGAG.............................................................................................................................................................................................. 291.000.00----1.00------------------
............................................................................................................................................................................AACCTATTTTTTTTTTTTTTTTCAT..................................................... 251.000.00--------------1.00--------
..............................................................................................ACTCTGAAATATATTGTA.......................................................................................................................................... 181.000.00---------1.00-------------
............................................................................................................................................................................AACCTATTTTTTTTTTTTTTTTTGG..................................................... 251.000.00-----------------1.00-----
..................................................................................................................................................................................................................ACTCTTGTTGCCCAGGCTGGAGTGCATTAAA......... 311.000.00------1.00----------------
.............CATGCCACTGCACTCCAGCCTCCCC.................................................................................................................................................................................................................... 251.000.00----1.00------------------
..............ATGCCACTGCACTCCAGCCTGGGTTTCC................................................................................................................................................................................................................ 281.000.00------------1.00----------
........................................................................................................................................................................TCTCAACCTATTTTTTGGGT.............................................................. 201.000.00----------1.00------------
................................................GACTCTGTCTCAAAAAAAATTACTG................................................................................................................................................................................. 251.000.00-----1.00-----------------
.............CATGCCACTGCACTCCAGCCTCGGC.................................................................................................................................................................................................................... 251.000.00----1.00------------------