ID: uc002npq.1_intron_1_0_chr19_21492144_r.5p
GENE: ZNF708(2)
chr19:21493103-21493352-


(3)
AGO2.ip
(1)
BRAIN
(2)
BREAST
(20)
CELL-LINE
(1)
CERVIX
(1)
HEART
(2)
HELA
(1)
LIVER
(1)
OTHER
(5)
SKIN

Sense strand
TTTATATAGGAATGTCATGTTAGAGAATTATAGAAACCTGGTATTCCTGGGTGAGGATAAGTTTTTTTTTTTTTAATTTTTATTATTTATTATTATTTTTTTTTTTGAGACAGAGTTTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCATTGCAACCTTTGCCTCCAGGGTTCAAGAGATTCTCCTGCCTCAGCCTCCTGCGTAGCTGAGATTACAGGCATGTGCCACCATGCCCG
..................................................((((.(((((((......................))))))).))))..........................................................................................................................................................
..................................................51............................................................113.......................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR189786SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR189782SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR040031(GSM532916)
G013T. (cervix)
SRR038854(GSM458537)
MM653. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
........................................................ATAAGTTTTTTTTTTTTTGGG.............................................................................................................................................................................215.000.001.004.00-----------------------------------
.........................................................TAAGTTTTTTTTTTTTTGGGT............................................................................................................................................................................213.000.001.002.00-----------------------------------
.................................................................TTTTTTTTTAATTTTTATTCCTC..................................................................................................................................................................232.000.002.00------------------------------------
........................................................ATAAGTTTTTTTTTTTTTGGGT............................................................................................................................................................................222.000.001.001.00-----------------------------------
..............................................................................TTTATTATTTATTATTATTTTTTTTCG.................................................................................................................................................272.000.00--2.00----------------------------------
.........................................................TAAGTTTTTTTTTTTTTGGG.............................................................................................................................................................................202.000.001.001.00-----------------------------------
...............................................................................................................................ACCCAGGCTGGAGTGCAGTGGCGCAACCG..............................................................................................292.000.001.001.00-----------------------------------
..............................................................................................................................................................................................AGATTCTCCTGCCTCAGCCTCCGAGC..................................262.000.002.00------------------------------------
.........................................................TAAGTTTTTTTTTTTTTGGGC............................................................................................................................................................................212.000.001.001.00-----------------------------------
.................................................................TTTTTTTTTAATTTTTATTATTTTCAG..............................................................................................................................................................271.000.00--1.00----------------------------------
...............................................................................TTATTATTTATTATTATTTAG......................................................................................................................................................211.000.00--1.00----------------------------------
..............................................................................................................................CACCCAGGCTGGAGTGCAGTGGCGCAACCG..............................................................................................301.000.001.00------------------------------------
.............................................................................................................................TCACCCAGGCTGGAGTGCAGTGGCGCACCC...............................................................................................301.000.001.00------------------------------------
............................................................................TTTTTATTATTTATTATTATTTAAG.....................................................................................................................................................251.000.00---1.00---------------------------------
............................................................................TTTTTATTATTTATTATTATTCAAG.....................................................................................................................................................251.000.00---1.00---------------------------------
....................TAGAGAATTATAGAAACCTGGTTTC.............................................................................................................................................................................................................251.000.00--------------------------------1.00----
............................................................................................................................................................................................AGAGATTCTCCTGCCTCAGCCCTAG.....................................251.000.001.00------------------------------------
.................................................................................................................................................................................................TTCTCCTGCCTCAGCCTCCTGCGTAGCCGGC..........................311.000.001.00------------------------------------
........................................................ATAAGTTTTTTTTTTTTGGGT.............................................................................................................................................................................211.000.001.00------------------------------------
.......................................................................................................................................................................................................................GTAGCTGAGATTACAGGCATGTAAAA.........261.000.00---------------------------------1.00---
............................................................................................TTATTTTTTTTTTTGAGACAGCA.......................................................................................................................................231.000.00----1.00--------------------------------
.....................................................................................................................................................................................................CCTGCCTCAGCCTCCTGCCCCA...............................221.000.00---------------------------1.00---------
.............................................................................................TATTTTTTTTTTTGAGACAGTGCG.....................................................................................................................................241.000.001.00------------------------------------
...................................................................................................................TTTCACTCTGTCACCCAGGCTGGAGCGAG..........................................................................................................291.000.001.00------------------------------------
............................................................................................................................................................................................AGAGATTCTCCTGCCTCAGCCGGGA.....................................251.000.00-1.00-----------------------------------
.....ATAGGAATGTCATGTTAG...................................................................................................................................................................................................................................1811.001.00-----------------------------------1.00-
........................................................ATAAGTTTTTTTTTTTGGG...............................................................................................................................................................................191.000.001.00------------------------------------
.....................................................................................TTTATTATTATTTTTTTTTCACG..............................................................................................................................................231.000.00----1.00--------------------------------
.......................................................................TTTAATTTTTATTATTTATTTATG...........................................................................................................................................................241.000.00---1.00---------------------------------
......................................................................................TTATTATTATTTTTTTTTTTCGG.............................................................................................................................................231.000.00---1.00---------------------------------
...........................................................AGTTTTTTTTTTTTTAATTTTTGAC......................................................................................................................................................................251.000.001.00------------------------------------
.....................................................................................................................................................................................................CCTGCCTCAGCCTCCTGCTTTC...............................221.000.00------------------1.00------------------
......................................................................................TTATTATTATTTTTTTTTTTCAAG............................................................................................................................................241.000.00--1.00----------------------------------
...................................................................TTTTTTTAATTTTTATTATTTTCAG..............................................................................................................................................................251.000.00-----1.00-------------------------------
.............................................................................................TATTTTTTTTTTTGAGACAGAGGCTC...................................................................................................................................261.000.00-1.00-----------------------------------
.................................................................................................................................................................................TCCAGGGTTCAAGAGAAA.......................................................181.000.00--------------1.00----------------------
..................................................................................TTATTTATTATTATTTTTTTTTTTTTAG............................................................................................................................................281.000.00-----------1.00-------------------------
....TATAGGAATGTCATGTTAGAGAATTATAGA........................................................................................................................................................................................................................3011.001.00-------------1.00-----------------------
.................................................................................ATTATTTATTATTATTTTTTTTTAAG...............................................................................................................................................261.000.00----1.00--------------------------------
........................................................ATAAGTTTTTTTTTTTGGGT..............................................................................................................................................................................201.000.001.00------------------------------------
...........................................................AGTTTTTTTTTTTTTAATTTTTGGGC.....................................................................................................................................................................261.000.00-1.00-----------------------------------
...................TTAGAGAATTATAGAAACCTGGTATT.............................................................................................................................................................................................................2611.001.00-------------------1.00-----------------
..............................................CTGGGTGAGGATAAGGGTC.........................................................................................................................................................................................191.000.00----------------------------------1.00--
................................................................................TATTATTTATTATTATTTTTTTAAG.................................................................................................................................................251.000.00--1.00----------------------------------
..................................................................................TTATTTATTATTATTTTTTTTTTTCCG.............................................................................................................................................271.000.00---1.00---------------------------------
...............CATGTTAGAGAATTATAGAAACCTG..................................................................................................................................................................................................................2511.001.00--------------------1.00----------------
.....................................................................................TTTATTATTATTTTTTTTTTTCG..............................................................................................................................................231.000.00----1.00--------------------------------
................................................................TTTTTTTTTTAATTTTTATCTG....................................................................................................................................................................221.000.00-----1.00-------------------------------
........................................................................................................................................................ATCTTGGCTCATTGCAACCTTGCC..........................................................................241.000.001.00------------------------------------
.............................................................................................................................TCACCCAGGCTGGAGTGCAGTGGCGCAACCG..............................................................................................311.000.001.00------------------------------------
..................................................................................................................GTTTCACTCTGTCACCCAGGC...................................................................................................................2101.001.00---------------1.00---------------------
....................................................................TTTTTTAATTTTTATTAGCAG.................................................................................................................................................................211.000.00----------1.00--------------------------
.......................................................................TTTAATTTTTATTATTTATTTTAG...........................................................................................................................................................241.000.00-----1.00-------------------------------
...................................................................TTTTTTTAATTTTTATTACTGG.................................................................................................................................................................221.000.001.00------------------------------------
...........................................................................................................................................................................................AAGAGATTCTCCTGCCTCAGCCTCGAGG...................................281.000.00-1.00-----------------------------------
.............................................CCTGGGTGAGGATAAGCA...........................................................................................................................................................................................181.000.00---------------------1.00---------------
..........................................................AAGTTTTTTTTTTTTTAATTTTAATA......................................................................................................................................................................261.000.00----------1.00--------------------------
..........................................................................AATTTTTATTATTTATCTTG............................................................................................................................................................201.000.00----1.00--------------------------------
............................................................................................................................................................................................AGAGATTCTCCTGCCTCAGCCCGAG.....................................251.000.001.00------------------------------------
...........................................................................................................................................................................................AAGAGATTCTCCTGCCTCAGCCCAG......................................251.000.001.00------------------------------------
........................................................ATAAGTTTTTTTTTTTTTGGGC............................................................................................................................................................................221.000.001.00------------------------------------
.........................................................................................................................................................................................................CCTCAGCCTCCTGCGTAGCTGCTC.........................241.000.00-------------------------1.00-----------
......................................TGGTATTCCTGGGTGAGG..................................................................................................................................................................................................1820.500.50------------------------------------0.50
..................................................................................TTATTTATTATTATTTTTTTTTTTGAG.............................................................................................................................................2780.380.38-----------0.38-------------------------

Antisense strand
TTTATATAGGAATGTCATGTTAGAGAATTATAGAAACCTGGTATTCCTGGGTGAGGATAAGTTTTTTTTTTTTTAATTTTTATTATTTATTATTATTTTTTTTTTTGAGACAGAGTTTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCATTGCAACCTTTGCCTCCAGGGTTCAAGAGATTCTCCTGCCTCAGCCTCCTGCGTAGCTGAGATTACAGGCATGTGCCACCATGCCCG
..................................................((((.(((((((......................))))))).))))..........................................................................................................................................................
..................................................51............................................................113.......................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR189786SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR189782SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR040031(GSM532916)
G013T. (cervix)
SRR038854(GSM458537)
MM653. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
....................................................................................................................................GGCTGGAGTGCAGTGGCGCAATGAGC............................................................................................ 264.000.002.002.00-----------------------------------
....................................................................................................................................GGCTGGAGTGCAGTGGCGCAATGTGC............................................................................................ 262.000.002.00------------------------------------
............................................................................................................................................................................................AGAGATTCTCCTGCCTCAGCCTCTCT.................................... 262.000.00--------2.00----------------------------
.................................................................................................................AGTTTCACTCTGTCACCCAAGC................................................................................................................... 222.000.00------2.00------------------------------
............................................................................................................................................................................................AGAGATTCTCCTGCCTCAGCCTCCAAA................................... 272.000.00---------2.00---------------------------
...........................................................................................................................................................................................AAGAGATTCTCCTGCCTCAGCCTCTAGC................................... 281.000.00------------1.00------------------------
..................................................................................................................................................................................................TCTCCTGCCTCAGCCTCCTGCGTAGCTGCG.......................... 301.000.001.00------------------------------------
..............................................................................................................................................................................................AGATTCTCCTGCCTCAATAG........................................ 201.000.00-----------------------1.00-------------
............................................................................................................................................................................................AGAGATTCTCCTGCCTCAGCCTCCTAAA.................................. 281.000.00-------1.00-----------------------------
.........................................................................................................................................................................................................CCTCAGCCTCCTGCGTACGG............................. 201.000.00-1.00-----------------------------------
.....................................................................................................................................................................................AGGCTGAGGCAGGAGAATCTCTTGAACCC........................................ 2901.001.00-----------------1.00-------------------
....................................................................................................................................................................................................CTACGCAGGAGGCTGAGGCAGGA............................... 2301.001.00-------------------------------1.00-----
.......................................................................................................................................................................................GAGGCTGAGGCAGGAGAATCTCTTGAAC....................................... 2801.001.00-----------------------------1.00-------
.....................................................................................................................................................................................GGGTTCAAGAGATTCTCCTGCGCT............................................. 241.000.00----------------1.00--------------------
............................................................................................................GACAGAGTTTCACTCTGTCACCCAGGCTCGG............................................................................................................... 311.000.001.00------------------------------------
........................................................................................................................................................................................TTCAAGAGATTCTCCTGCCTCAGCCTAAA..................................... 291.000.00--------------------------1.00----------
.....................................................................................................................................................................................................CCTGCCTCAGCCTCCTGCGTTGG.............................. 231.000.001.00------------------------------------
......................................................................................................................................................................................................CTGCCTCAGCCTCCTGCGTTGGG............................. 231.000.001.00------------------------------------
...................................................................................................................................AGGCTGGAGTGCAGTGGCGCAATCTCCGC.......................................................................................... 291.000.00-1.00-----------------------------------
....................................................................................................................................GGCTGGAGTGCAGTGGCGCAAGAGC............................................................................................. 251.000.00-1.00-----------------------------------
.................................................................................................................................................................................................TTCTCCTGCCTCAGCCTCCTGCGTGGCC............................. 281.000.00-1.00-----------------------------------
....................................................................................................................................GGCTGGAGTGCAGTGGCGCAATGAAC............................................................................................ 261.000.001.00------------------------------------
....................................................................................................................................GGCTGGAGTGCAGTGGCGCAATGGTC............................................................................................ 261.000.001.00------------------------------------
....................................................................................................................................GGCTGGAGTGCAGTGGCGCAATGGAC............................................................................................ 261.000.001.00------------------------------------
.............................................................................................................................................................................................GAGATTCTCCTGCCTCAGCCTGCGG.................................... 251.000.00-1.00-----------------------------------
.........................................................................................................................................................................................................................AGCTGAGATTACAGGCACTTT............ 211.000.00----------------------1.00--------------
.............................................................................................TATTTTTTTTTTTGAGACAGAGTTTTAG................................................................................................................................. 281.000.00--1.00----------------------------------
.................................................................................................................................................................................................TTCTCCTGCCTCAGCCTCCTGCGTCGA.............................. 271.000.001.00------------------------------------
...................................................................................................................................................................................................CTCCTGCCTCAGCCTCCTGCGTAGACC............................ 271.000.00-1.00-----------------------------------
....................................................................................................................................GGCTGGAGTGCAGTGGCGCAATCTTGGGT......................................................................................... 291.000.001.00------------------------------------
............................................................................................................................................................................................AGAGATTCTCCTGCCTCAGAAA........................................ 221.000.00------------------------------1.00------
............................................................................................................................................................................................AGAGATTCTCCTGCCTCGGAA......................................... 211.000.00----------------------------1.00--------
..............................................................................................................CAGAGTTTCACTCTGGTG.......................................................................................................................... 181.000.00------------------------1.00------------
..........................................................................................................................................AGTGCAGTGGCGCAATCTTGGCTCATTGGGC................................................................................. 311.000.00-1.00-----------------------------------
............................................................................................................................................................................................AGAGATTCTCCTGCCTAAA........................................... 191.000.00-------1.00-----------------------------