ID: uc002nkf.2_intron_21_0_chr19_18976588_f
GENE: (22)
chr19:18976538-18976902+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(3)
AGO2.ip 		(3)
B-CELL 		(4)
BREAST 		(18)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(2)
HELA 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(11)
SKIN 		(1)
XRN.ip

Sense strand
AGCCTTCCCAGATGAGCCAGCCCGGCCTCTCCCAGCCGGAGCTGTCCCAGGTGAGCCCGCCCCTGGGACGGGACTTACCTGAGTGAGGGTGGGGCTATGCACCTGAAACATTCCCTCTGAAGAGCCCCAGAGAGCTGGCCTGGCCCATGTCCACTGTCTGAATTACCTGTCCCTGGGCTGGGGTCATCAGAGTGGGTCTCCTGGGTCTTAGTTTGGGGACGGGTTTTCCATTCTTTTCTCTGGGGCTGCTGAGGGCTGGGTGGATGTGAGCACCCTTGGCCTGTGGCTTGCTTACCTCCTGACCTTGTCTTTCAGGACAGTTACCTTGGTGACGAGTTTAAATCACAAATCGACGTGGCGCTCTC
........................................................................................................................................................................................................................................................((((((((.(((((((.(((((((.....((((...))))))))))).)))..)))).))))).)))..................................................
....................................................................................................................................................................................................................................................245...................................................................315................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189782SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR189786SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		GSM532880(GSM532880)
G659T. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR037937(GSM510475)
293cand2. (cell line)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038860(GSM458543)
MM426. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
...................................................................................................................................................................................................................................................................................................TTACCTCCTGACCTTGTCTTTCAGT.................................................2511.000.00-6.00--2.00---------1.00--1.00----------1.00-----------------
.............................TCCCAGCCGGAGCTGTCCCAGG..........................................................................................................................................................................................................................................................................................................................22110.0010.00--5.005.00------------------------------------------
.........................................................................................................................................................................................................................................................TGAGGGCTGGGTGGATGTGAGCAT............................................................................................2418.001.008.00---------------------------------------------
...................................................................................................................................................................................................................................................................................................TTACCTCCTGACCTTGTCTTTC....................................................2213.003.00-1.00---------------------------1.001.00---------------
.........................................................................................................................................................................................................................................................TGAGGGCTGGGTGGATGTGAG...............................................................................................2112.002.00------------1.00-------------------1.00-------------
.........................................................................................................................................................................................................................................................................................................................AGGACAGTTACCTTGGTGACGAGTTTAAACCAC...................332.000.00-----2.00----------------------------------------
...................................................................................................................................................................................................................................................................................................TTACCTCCTGACCTTGTCTTTCA...................................................2312.002.00---------1.001.00-----------------------------------
..........................................................................................................................................................................................................................................................GAGGGCTGGGTGGATGCTCT...............................................................................................202.000.001.00-----1.00---------------------------------------
........................................................................................................................................................................................................................................................CTGAGGGCTGGGTGGATGTGAGA..............................................................................................2312.001.00------------1.00-----------1.00---------------------
........................................................................................................................................................................................................................................................................................................................CAGGACAGTTACCTTGGTGACGAGT............................2512.002.00-------2.00--------------------------------------
...................................................................................................................................................................................................................................................................................................TTACCTCCTGACCTTGTCTTC.....................................................211.000.00-------------------1.00--------------------------
............................................................................................................................................................TCTGAATTACCTGTCCCTGGGCA..........................................................................................................................................................................................231.000.00---------------------------1.00------------------
........................................................................................................................................................................................................................................................................................................................CAGGACAGTTACCTTGGTGACGAGTT...........................2611.001.00-----------1.00----------------------------------
............................................................................................................................CCCCAGAGAGCTGGCCTG...............................................................................................................................................................................................................................1811.001.00--------------1.00-------------------------------
.......................................................................................................................................................................................................................................TCTTTTCTCTGGGGCTGCC...................................................................................................................191.000.00-------------1.00--------------------------------
......................................................................................................................................................................................................................................................................GATGTGAGCACCCTTGGCCTGTGGC..............................................................................2511.001.00------------------------------------------1.00---
.........................................................................................................................................................................................................................................................TGAGGGCTGGGTGGATGTGAGAA.............................................................................................2311.002.00------------------1.00---------------------------
.........................................................................................................................................................................................................................................................TGAGGGCTGGGTGGATGTGAGCA.............................................................................................2311.001.00---------------1.00------------------------------
.........................................................................................................................................................................................................................................................................................................................................................CAAATCGACGTGGCGCTC..1811.001.00--------------------------1.00-------------------
.........................................................................................................................................................................................................................................................TGAGGGCTGGGTGGATGTGA................................................................................................2011.001.00----------------------------------1.00-----------
................................CAGCCGGAGCTGTCCCAGGACA.......................................................................................................................................................................................................................................................................................................................221.000.00---------1.00------------------------------------
.................................AGCCGGAGCTGTCCCAGGTGAGCC....................................................................................................................................................................................................................................................................................................................2411.001.00-----------------------1.00----------------------
...................................................................................................................................................................................................................................................................................................TTACCTCCTGACCTTGTCTTTCAGA.................................................251.000.00-------------------------------------1.00--------
........................................................................................................................................................................................................................................................CTGAGGGCTGGGTGGATGTGAG...............................................................................................2211.001.00----------------------------------------1.00-----
..................................................................................................................................................ATGTCCACTGTCTGAA...........................................................................................................................................................................................................1611.001.00-----------1.00----------------------------------
.........................................................................................................................................................................................................................................................TGAGGGCTGGGTGGATGTAAGC..............................................................................................221.000.00---------------1.00------------------------------
......................................................................................................................................................................................................................................................................................................CCTCCTGACCTTGTCTTTCAGA.................................................221.000.00---------------------------------------1.00------
....................................................................................................................................................................................................................................................................................................TACCTCCTGACCTTGTCTTCAGT..................................................231.000.00----1.00-----------------------------------------
........................................................................................................................................................................................................................................................CTGAGGGCTGGGTGGATGTGAAA..............................................................................................231.000.00-----------------------------------1.00----------
..........................................................................................................................................................................................................................................................GAGGGCTGGGTGGATGCTC................................................................................................191.000.00------1.00---------------------------------------
........................................................................................................................................................................................................................................................CTGAGGGCTGGGTGGATGTGAGCA.............................................................................................2411.001.00--------1.00-------------------------------------
........................................................................................................................................................................................................................................................................................................................................................ACAAATCGACGTGGCGCT...1811.001.00-------1.00--------------------------------------
..........................................................................................................................................................................................................................................................GAGGGCTGGGTGGATGCTCC...............................................................................................201.000.00------1.00---------------------------------------
..................................................................................GTGAGGGTGGGGCTATGCACCTGAA..................................................................................................................................................................................................................................................................2511.001.00--------------------1.00-------------------------
.............................TCCCAGCCGGAGCTGTCCCAGC..........................................................................................................................................................................................................................................................................................................................221.000.00--1.00-------------------------------------------
.........................................................................................................................................................................................................................................................TGAGGGCTGGGTGGATGTGAGC..............................................................................................2211.001.00--------1.00-------------------------------------
....................................................................................................................................................................................................................................................................................................................................................AATCACAAATCGACGTG........1711.001.00--------------------------------------1.00-------
.......CCAGATGAGCCAGCCCGGC...................................................................................................................................................................................................................................................................................................................................................1911.001.00------------------------------------1.00---------
..........................................................................................................................................................................................................................................................................................................................................................AAATCGACGTGGCGCTCTCATA221.000.00----------1.00-----------------------------------
.............................................................................................................................................................................................................................................CTCTGGGGCTGCTGAGGGCTGGG.........................................................................................................2311.001.00-------------1.00--------------------------------
..........................................................................................................................................................................CCCTGGGCTGGGGTCATCAGAGTG...........................................................................................................................................................................2411.001.00-------------------------------1.00--------------
...............................................................................................................................................CCCATGTCCACTGTCTGAATTACCTGT...................................................................................................................................................................................................2711.001.00----------------------1.00-----------------------
..................................................................................................................................................................................................................................................................................................................................ACCTTGGTGACGAGTT...........................1611.001.00----------------1.00-----------------------------
...................................................................................................................................................................................................................................................................................................TTACCTCCTGACCTTGTCTTT.....................................................2111.001.00-1.00--------------------------------------------
...............................................................................................................................................................................................................................................................................................TTGCTTACCTCCTGACCTTGTCTTTCAG..................................................2811.001.00---------------------------------1.00------------
............................................................................................................................................................................................................................................................................................................................................................ATCGACGTGGCGCTC..1511.001.00---------------------1.00------------------------
...........................................................................................................................................................................................................................................................AGGGCTGGGTGGATGTGA................................................................................................1820.500.50--------0.50-------------------------------------
..............................................................................................................................................................................................................................................TCTGGGGCTGCTGAGGGC.............................................................................................................1830.330.33-------------------------------------------0.33--
.....................................................................................................................................................................................................................TGGGGACGGGTTTTC.........................................................................................................................................1570.140.14----------------0.14-----------------------------

Antisense strand
AGCCTTCCCAGATGAGCCAGCCCGGCCTCTCCCAGCCGGAGCTGTCCCAGGTGAGCCCGCCCCTGGGACGGGACTTACCTGAGTGAGGGTGGGGCTATGCACCTGAAACATTCCCTCTGAAGAGCCCCAGAGAGCTGGCCTGGCCCATGTCCACTGTCTGAATTACCTGTCCCTGGGCTGGGGTCATCAGAGTGGGTCTCCTGGGTCTTAGTTTGGGGACGGGTTTTCCATTCTTTTCTCTGGGGCTGCTGAGGGCTGGGTGGATGTGAGCACCCTTGGCCTGTGGCTTGCTTACCTCCTGACCTTGTCTTTCAGGACAGTTACCTTGGTGACGAGTTTAAATCACAAATCGACGTGGCGCTCTC
........................................................................................................................................................................................................................................................((((((((.(((((((.(((((((.....((((...))))))))))).)))..)))).))))).)))..................................................
....................................................................................................................................................................................................................................................245...................................................................315................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189782SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR189786SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		GSM532880(GSM532880)
G659T. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR037937(GSM510475)
293cand2. (cell line)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038860(GSM458543)
MM426. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................................................................................................GAGCCCCAGAGAGCTAGGT................................................................................................................................................................................................................................. 191.000.00-----1.00----------------------------------------
....................................................................................................................................................................................................................................................................................................................................................AATCACAAATCGACGTCT....... 181.000.00-----------------------------------------1.00----
...........................................................................................GGGCTATGCACCTGAGGGC............................................................................................................................................................................................................................................................... 191.000.00----1.00-----------------------------------------
..................AGCCCGGCCTCTCCCTT.......................................................................................................................................................................................................................................................................................................................................... 171.000.00-------------------------1.00--------------------
..............................................................................................................................................................................................................................................................................................................................................GATTTGTGATTTAAACT.............. 1760.170.17--------------------------------------------0.17-
................GGAGAGGCCGGGCTGG............................................................................................................................................................................................................................................................................................................................................. 1660.170.17---------------------------------------------0.17