ID: uc002nja.1_intron_1_0_chr19_18546294_r
GENE: (6)
chr19:18546244-18546422-


(1)
AGO1.ip 		(3)
AGO2.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(2)
BRAIN 		(8)
BREAST 		(15)
CELL-LINE 		(1)
FIBROBLAST 		(3)
HEART 		(2)
HELA 		(7)
LIVER 		(1)
OTHER 		(5)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AGCTGATGCTGGGCGGAACCAACACACTGGTGCTGCACAACACGTGTGAGGTGCGGCGCGGCTTCAGGGGCTGCTATGGGAGGCAGGGCTTGGCCACCGCCCCCATCTCCTGACCCACCCGCCCCGCAGGACTCGCTGCTGGCCGCACCCATCATGCTGGACCTAGCGCTGCTGACCGA
...................................................(((((.((((..(((((((.....(((((.(((..(((...)))...))))))))))))))).....)))).)))))...................................................
..................................................51............................................................................129................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189786SRR189787SRR189784RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189783DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR343334SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		TAX577742(Rovira)
total RNA. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
..................................................GTGCGGCGCGGCTTCAGGGGCCG..........................................................................................................231381.0031.004.00337.0038.001.00----------1.00----------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCTG..........................................................................................................231286.00286.00258.008.002.009.002.006.00----1.00--------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCT...........................................................................................................22180.0080.0071.002.002.002.00--1.00------------------1.00----------------------1.00------
..................................................GTGCGGCGCGGCTTCAG................................................................................................................17144.0044.0041.00--1.001.00-----------1.00--------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGC............................................................................................................21131.0031.0017.002.004.00-1.00-1.00--1.00----1.00----------------1.00-1.00---------1.00---------1.00-
..................................................GTGCGGCGCGGCTTCAGGGGCC...........................................................................................................22121.0031.001.008.0012.00----------------------------------------------------
...................................................TGCGGCGCGGCTTCAGGGGCCG..........................................................................................................22113.001.00-4.003.006.00---------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCCGC.........................................................................................................24112.0031.00-8.004.00----------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGG.............................................................................................................20111.0011.007.00----------1.00--------------1.001.00-----------1.00---------------
...................................................TGCGGCGCGGCTTCAGGGGCTG..........................................................................................................22110.0010.005.00--3.00-2.00-------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCTGCT........................................................................................................2519.009.002.00-----2.00---1.00----------1.00-1.00-----1.00-----------------1.00-------
..................................................GTGCGGCGCGGCTTCAGGGGCGG..........................................................................................................2318.0031.007.001.00-----------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGG..............................................................................................................1918.008.004.00--1.00---1.00-1.00--1.00------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCTA..........................................................................................................2317.0080.003.001.001.002.00---------------------------------------------------
........................................................................................................ATCTCCTGACCCACCCGCCCCGCAGTC................................................277.000.00-6.001.00----------------------------------------------------
........................................................................................................ATCTCCTGACCCACCCGCCCCGCAGC.................................................266.000.00-6.00-----------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCCGG.........................................................................................................2415.0031.00-2.003.00----------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCTGC.........................................................................................................2415.005.00-1.00--2.00-1.00---------1.00--------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCG...........................................................................................................2215.0031.003.002.00-----------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGG...............................................................................................................1814.004.00----------------------1.00------------------1.001.00------1.00-----
..................................................GTGCGGCGCGGCTTCAGGGGCCA..........................................................................................................2314.0031.00-2.002.00----------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCTGGT........................................................................................................2513.00286.00--2.00---1.00------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCTGCTATGGGAGGC...............................................................................................3413.003.00----3.00--------------------------------------------------
...................................................TGCGGCGCGGCTTCAGGGG.............................................................................................................1913.003.00--------3.00----------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCCC..........................................................................................................2313.0031.00-1.002.00----------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCAG..........................................................................................................2313.0031.003.00------------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCTGCC........................................................................................................2513.005.00-3.00-----------------------------------------------------
............................................................................................................................................................CTGGACCTAGCGCTGCTGACCGA2312.002.00-------1.00----1.00------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGGCG..........................................................................................................2312.0011.00--2.00----------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCTGG.........................................................................................................2412.00286.00--1.00----1.00-----------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGGC...........................................................................................................2212.0011.00--2.00----------------------------------------------------
...................................................TGCGGCGCGGCTTCAGGGGCT...........................................................................................................2112.002.001.00-----------------------------------1.00------------------
..................................................GTGCGGCGCGGCTTCAGGGCTG...........................................................................................................2212.008.001.00--1.00---------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCTGT.........................................................................................................2412.00286.001.00-----1.00------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGTTGC.........................................................................................................2412.0011.00-2.00-----------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCTGCTA.......................................................................................................2612.002.001.00--------------1.00---------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCA...........................................................................................................2212.0031.002.00------------------------------------------------------
...............................................................................................................................AGGACTCGCTGCTGGGGAA.................................192.000.00-------------2.00-----------------------------------------
..................................................GTGCGGCGCGGCTTCA.................................................................................................................1612.002.002.00------------------------------------------------------
.......GCTGGGCGGAACCAACACACTGGTGCT.................................................................................................................................................2711.001.00-------------------1.00-----------------------------------
..................................................GTGCGGCGCGGCTTCAAGAG.............................................................................................................2011.002.001.00------------------------------------------------------
..................................................GTGCGGCGCGGCTTCATAA..............................................................................................................1911.002.00--------------------1.00----------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCTGCTATGGGAGGCAGGGCTTGGCCACCGCCCCCATCTCCTGACCCACCCGCCCCGCCG..................................................791.000.00----------------------------------------1.00--------------
...........................................................................................................................................................GCTGGACCTAGCGCTGCT......1811.001.00--------------------------------------------------1.00----
..................................................GTGCGGCGCGGCTTCAGGGGCCGT.........................................................................................................2411.0031.00--1.00----------------------------------------------------
........................................................................................................ATCTCCTGACCCACCCGCCCCGCAGT.................................................261.000.00-1.00-----------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGATG..........................................................................................................2311.0011.001.00------------------------------------------------------
...................................................TGCGGCGCGGCTTCAGGGGCTGCTTTGT....................................................................................................2811.001.00----------1.00--------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCTGGC........................................................................................................2511.00286.00--1.00----------------------------------------------------
...................................................TGCGGCGCGGCTTCAGGGGCCGA.........................................................................................................2311.001.00-1.00-----------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGT............................................................................................................2111.0011.00---1.00---------------------------------------------------
...................................................TGCGGCGCGGCTTCAGGGGCTGCTACGGG...................................................................................................291.000.00-1.00-----------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGCTGC............................................................................................................2111.0044.001.00------------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCTATG........................................................................................................2511.0080.001.00------------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGTCT...........................................................................................................2211.008.001.00------------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCTGCTATG.....................................................................................................2811.001.00---1.00---------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGTCG..........................................................................................................2311.0011.00--1.00----------------------------------------------------
.........................................................................................................TCTCCTGACCCACCCGCCCCGCAGTC................................................261.000.00-1.00-----------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCCGCC........................................................................................................2511.0031.00--1.00----------------------------------------------------
..........................................................CGGCTTCAGGGGCTGCTATGGGAGGCA..............................................................................................2711.001.00-1.00-----------------------------------------------------
...................................................TGCGGCGCGGCTTCAGGGAT............................................................................................................201.000.00---------------------------------------------1.00---------
..................................................GTGCGGCGCGGCTTCAGGGGCCGCT........................................................................................................2511.0031.00-1.00-----------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGTCTG..........................................................................................................2311.008.00-1.00-----------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCTGCTATGGGG..................................................................................................311.000.00----1.00--------------------------------------------------
.............................................................................................................CTGACCCACCCGCCCCGCAGT.................................................211.000.00-1.00-----------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGCTGCTATGGGAGG................................................................................................3311.001.00----1.00--------------------------------------------------
.......................................................................................................................................................TCATGCTGGACCTAGCGCTGCT......2211.001.00------------------------------1.00------------------------
........................CACTGGTGCTGCACAACACGTGCGAG.................................................................................................................................261.000.00-------------------------------------1.00-----------------
..................................................GTGCGGCGCGGCTTCAGGGGCGC..........................................................................................................2311.0031.00-1.00-----------------------------------------------------
...................................................TGCGGCGCGGCTTCAGGGGCCGCC........................................................................................................2411.001.00--1.00----------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGA............................................................................................................2111.0011.00--------------------------------1.00----------------------
..................................................GTGCGGCGCGGCTTCAGGGACCG..........................................................................................................2311.008.00-1.00-----------------------------------------------------
...................................................TGCGGCGCGGCTTCAGGGGCTGCCATG.....................................................................................................271.000.00---1.00---------------------------------------------------
...TGATGCTGGGCGGAACCAAC............................................................................................................................................................2011.001.00--------------------------------------1.00----------------
..................................................GTGCGGCGCGGCTTCATTG..............................................................................................................1911.002.001.00------------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGATGT.........................................................................................................2411.0011.001.00------------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGGTT...........................................................................................................2211.0011.001.00------------------------------------------------------
...................................................TGCGGCGCGGCTTCAG................................................................................................................1611.001.00------------------1.00------------------------------------
...................................................................................................................................................CCCATCATGCTGGACCTAG.............1911.001.00----------------------------------------------1.00--------
...................................................TGCGGCGCGGCTTCAGGGGCTGCTACGG....................................................................................................281.000.00----------------------------------1.00--------------------
..................................................GTGCGGCGCGGCTTCAGGGGGTA..........................................................................................................2311.0011.001.00------------------------------------------------------
..............................................TGAGGTGCGGCGCGGTA....................................................................................................................171.000.00--------------------------------------------1.00----------
..................................................GTGCGGCGCGGCTTCAGGGGAT...........................................................................................................2211.0011.001.00------------------------------------------------------
...............................................................................................................................AGGACTCGCTGCTGGCCGCACC..............................2211.001.00---------1.00---------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGTCCG..........................................................................................................2311.008.00-1.00-----------------------------------------------------
................................CTGCACAACACGTGTGAG.................................................................................................................................1811.001.00------------------------1.00------------------------------
...................................................TGCGGCGCGGCTTCAGGGGCGC..........................................................................................................2211.001.00-1.00-----------------------------------------------------
..................................................GTGCGGCGCGGCTTCAGGGACAG..........................................................................................................2311.008.001.00------------------------------------------------------
............................................................................................................CCTGACCCACCCGCCCCGCAGTT................................................231.000.00-1.00-----------------------------------------------------
..............................................................TTCAGGGGCTGCTATGGGATGC...............................................................................................221.000.00----1.00--------------------------------------------------
...................................................TGCGGCGCGGCTTCAGGGGC............................................................................................................2011.001.00----1.00--------------------------------------------------
..................................................GTGCGGCGCGGCTTCAAA...............................................................................................................1811.002.00-----------------1.00-------------------------------------
...............................................................TCAGGGGCTGCTATGGGAGGCAGGGCTTGGCCA...................................................................................3311.001.00----------------------------1.00--------------------------
...................................................TGCGGCGCGGCTTCAGGGGCTGCT........................................................................................................2411.001.00-1.00-----------------------------------------------------
.........................................................................................................TCTCCTGACCCACCCGCCCCGCAGC.................................................251.000.00-1.00-----------------------------------------------------
...................................................TGCGGCGCGGCTTCAGGGGCTGCTATGGGA..................................................................................................3011.001.00---------------1.00---------------------------------------
.GCTGATGCTGGGCGGAACCAAC............................................................................................................................................................2211.001.00-----------------------------------1.00-------------------
..................................................GTGCGGCGCGGCTTCAGGGGGT...........................................................................................................2211.0011.001.00------------------------------------------------------
...........................................................................ATGGGAGGCAGGGCTTGGCC....................................................................................2020.500.50--0.50----------------------------------------------------
.......................................................................................................CATCTCCTGACCCACCCGC.........................................................1920.500.50------------------------------------------------------0.50

Antisense strand
AGCTGATGCTGGGCGGAACCAACACACTGGTGCTGCACAACACGTGTGAGGTGCGGCGCGGCTTCAGGGGCTGCTATGGGAGGCAGGGCTTGGCCACCGCCCCCATCTCCTGACCCACCCGCCCCGCAGGACTCGCTGCTGGCCGCACCCATCATGCTGGACCTAGCGCTGCTGACCGA
...................................................(((((.((((..(((((((.....(((((.(((..(((...)))...))))))))))))))).....)))).)))))...................................................
..................................................51............................................................................129................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189786SRR189787SRR189784RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189783DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR343334SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		TAX577742(Rovira)
total RNA. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
..........................................................................................TGGGTCAGGAGATGGGGGCGGTGGCCA.............................................................. 2711.001.00---------------------------------------------------1.00---
......................................................................................................CCATCTCCTGACCCATG............................................................ 171.000.00----------------------------------------------------1.00--
...............................................................................................................GACCCACCCGCCCCGCGGGA................................................ 201.000.00-----------1.00-------------------------------------------
........................................................................................GGGGCGGTGGCCAAG............................................................................ 1540.250.25-----------------0.25-------------------------------------