ID: uc002nhz.3_intron_9_0_chr19_18235585_f.3p
GENE: (10)
chr19:18239010-18239259+


(1)
AGO1.ip 		(1)
AGO2.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(6)
BRAIN 		(5)
BREAST 		(13)
CELL-LINE 		(3)
CERVIX 		(1)
HEART 		(1)
HELA 		(1)
KIDNEY 		(5)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(14)
SKIN

Sense strand
ACTGGCCCTTCTAGAAGGTTCCTAAGTCATTGCTTCATCCAGCCTCCCGGATGTGGCTTCATGACAGTGTCATGAGAGCTGGTCAGGGGAGGCACTGCATCCCCAGCCTGGGGTGAGAACTCTAGAGGCCTCAGGAAATTGCTGGGTGATGCAGGGTGAGGCAGGGAGGCTCCAGCTGAGCCTCCTCCCTCATCTTGCAGAGATGGTGCCACTGAGTCACCTCGAAGAAGAACAGCCCCCAGCACCTGAG
......................................................................................................((((((((((((.((....))....)))))))......)))))....((((((((((((..(((((((((.....))))))))).))))))))))))...................................................
......................................................................................................103..............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189786GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191481(GSM715591)
43genomic small RNA (size selected RNA from t. (breast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
....................................................................................................................................................................................CCTCCTCCCTCATCTTGCAGT.................................................2115.001.001.00-1.00----1.00--1.00----------1.00----------------------------------
...........................................................................................................CTGGGGTGAGAACTCTG..............................................................................................................................175.000.00---------1.00--2.00----------------------1.00-------1.00------------
.....................................................................................................................................................TGCAGGGTGAGGCAGGGAGGCTCT.............................................................................2413.001.00-------1.00---------1.00------------------1.00-------------------
....................................................................................................................................................ATGCAGGGTGAGGCAGGGAGGCT...............................................................................2313.003.00---1.00-------------------------------------1.00----1.00---------
....................................................................................................................................................ATGCAGGGTGAGGCAGGGAGGCTT..............................................................................2413.003.00---1.00----1.00-1.00---------------------------------------------
....................................................................................................................................................................................CCTCCTCCCTCATCTTGCAGA.................................................2113.003.00--1.00---------------------1.00-------------1.00-----------------
....................................................................................................................................................ATGCAGGGTGAGGCAGGGAGAA................................................................................2212.001.00-----2.00--------------------------------------------------
...............................................................................................................................................................................CTGAGCCTCCTCCCTCATCTTGCAG..................................................2512.002.00----2.00---------------------------------------------------
...................................................................................................................................................................................GCCTCCTCCCTCATCTTGCAGT.................................................222.000.00--------------------------------1.00------------1.00----------
...................................................................................................................................................GATGCAGGGTGAGGCAGGGAGGC................................................................................2312.002.00-2.00------------------------------------------------------
...................................................................................................................................................GATGCAGGGTGAGGCAGGGAGG.................................................................................2212.002.00-----------1.00------------------1.00-------------------------
...................................................................................................................................................................................GCCTCCTCCCTCATCTTGCAGA.................................................2212.002.00--1.00----------------1.00------------------------------------
...............................................................................................................................................................................CTGAGCCTCCTCCCTCCAG........................................................191.000.00--------------------------1.00-----------------------------
....................................................................................................................................................ATGCAGGGTGAGGCAGGGAGGCTA..............................................................................2411.003.00----------------1.00---------------------------------------
....................................................................................................................................................ATGCAGGGTGAGGCAGGG....................................................................................1821.001.00----------------------------------------------------0.500.50--
......................................................................................................................................................................................................................AGTCACCTCGAAGAAGAA..................1811.001.00--------------------------------------------------1.00-----
.....................................................................................................................................................TGCAGGGTGAGGCAGGGAGGC................................................................................2111.001.00-------------------------------------------------1.00------
................................................................................................................................................................................................................................AAGAAGAACAGCCCCCAGCACC....2211.001.00-----------------------------------------------1.00--------
....................................................................................................................................................................................CCTCCTCCCTCATCTTGCAGAA................................................2211.003.00-----------------------1.00--------------------------------
.....................................................................................................................................................TGCAGGGTGAGGCAGGGAGGCT...............................................................................2211.001.00------------------------------------------1.00-------------
....................................................................................................................................................ATGCAGGGTGAGGCAGGGAGGC................................................................................2211.001.00------1.00-------------------------------------------------
...................................................................................................................................................GATGCAGGGTGAGGCAGGGAGGCAT..............................................................................2511.002.001.00-------------------------------------------------------
...................................................................................................................................................GATGCAGGGTGAGGCAGGGAGGT................................................................................2311.002.00-------------------------1.00------------------------------
....................................................................................................................................................ATGCAGGGTGAGGCAGGGAGGCC...............................................................................2311.001.00-------------------------------1.00------------------------
....................................................................................................................................................ATGCAGGGTGAGGCAGGGAGGCTATTT...........................................................................2711.003.001.00-------------------------------------------------------
.....................................................................................................................................................TGCAGGGTGAGGCAGGGAGGGTAT.............................................................................241.000.00-------------------------------------1.00------------------
...................................................................................................................................................GATGCAGGGTGAGGCAGGGAGGG................................................................................2311.002.00-1.00------------------------------------------------------
.....................................................................................................................................................TGCAGGGTGAGGCAGGGAG..................................................................................1911.001.00-----------------------------1.00--------------------------
........................................................................................................................................................AGGGTGAGGCAGGGAGCGGA..............................................................................201.000.00------------------------------------------------1.00-------
....................................................................................................................................................................................CCTCCTCCCTCATCTTGCAGTT................................................2211.001.00---------1.00----------------------------------------------
..............................................................................................................................................................................GCTGAGCCTCCTCCCTCATCTTGCAGAAAAA.............................................311.000.00------------------1.00-------------------------------------
....................................................................................................................................................ATGCAGGGTGAGGCAGGGAG..................................................................................2011.001.00--------------1.00-----------------------------------------
....................................................................................................................................................................................CCTCCTCCCTCATCTTGCAG..................................................2011.001.00--------------------1.00-----------------------------------
....................................................................................................................................................ATGCAGGGTGAGGCAGGGAGGCTCT.............................................................................251.000.00---------------------------------------------------1.00----
.....................................................................................................................................................TGCAGGGTGAGGCAGGGAGGCTTAT............................................................................2511.001.001.00-------------------------------------------------------
.....................................................................................................................................................TGCAGGGTGAGGCAGGGAGGCTCTT............................................................................2511.001.00---1.00----------------------------------------------------
.....................................................................................................................................................TGCAGGGTGAGGCAGGGAGGCTCTA............................................................................2511.001.00--------------------------------------------1.00-----------
.....................................................................................................................................................TGCAGGGTGAGGCAGGGAGGCTC..............................................................................2311.001.00---------------1.00----------------------------------------
................................CTTCATCCAGCCTCCGCA........................................................................................................................................................................................................181.000.00----------------------------1.00---------------------------
....................................................................................................................................................................................CCTCCTCCCTCATCTTGTAGA.................................................211.000.00----------------------1.00---------------------------------
.....................................................................................................................................................TGCAGGGTGAGGCAGGGAGGCAC..............................................................................2311.001.00----1.00---------------------------------------------------
.............................................................................................................................................................GAGGCAGGGAGGCTCCAG...........................................................................1830.330.33-------------0.33------------------------------------------
........................................................................................................................................................AGGGTGAGGCAGGGAGGC................................................................................1850.200.20------------------------------------------------------0.20-
.................................................................................................................................................................................................................................AGAAGAACAGCCCCC..........1570.140.14-------------------------------------------------------0.14

Antisense strand
ACTGGCCCTTCTAGAAGGTTCCTAAGTCATTGCTTCATCCAGCCTCCCGGATGTGGCTTCATGACAGTGTCATGAGAGCTGGTCAGGGGAGGCACTGCATCCCCAGCCTGGGGTGAGAACTCTAGAGGCCTCAGGAAATTGCTGGGTGATGCAGGGTGAGGCAGGGAGGCTCCAGCTGAGCCTCCTCCCTCATCTTGCAGAGATGGTGCCACTGAGTCACCTCGAAGAAGAACAGCCCCCAGCACCTGAG
......................................................................................................((((((((((((.((....))....)))))))......)))))....((((((((((((..(((((((((.....))))))))).))))))))))))...................................................
......................................................................................................103..............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189786GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191481(GSM715591)
43genomic small RNA (size selected RNA from t. (breast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
.................................................................................................................................................................................GAGCCTCCTCCCTCATATG...................................................... 191.000.00----------------------------------1.00---------------------
.............................................................................................................................................TCACCCTGCATCACCCAG........................................................................................... 1811.001.00---------------------------1.00----------------------------
..................................................................................................................................................................................................................................GAAGAACAGCCCCCAGCGG..... 191.000.00----------------------------------------1.00---------------
........................................................................................................................................................................................CTCCCTCATCTTGCACTA................................................ 181.000.00---------------------------------------1.00----------------
....................................................................................................................................AGGAAATTGCTGGGTAAA.................................................................................................... 181.000.00------1.00-------------------------------------------------
.............................................................................................................................AGGCCTCAGGAAATTGTGCG......................................................................................................... 201.000.00--------1.00-----------------------------------------------
.................................................................................................................................................................................GAGCCTCCTCCCTCAGGT....................................................... 181.000.00---------------------------------1.00----------------------
..............................................................................................................................................TGGGTGATGCAGGGTCCA.......................................................................................... 181.000.00-------------1.00------------------------------------------
.................................................................................................................................................................................GAGCCTCCTCCCTCATATT...................................................... 191.000.00-----------1.00--------------------------------------------