ID: uc002nhz.3_intron_18_0_chr19_18249935_f.5p
GENE: (19)
chr19:18249885-18250134+


(1)
AGO2.ip
(1)
BRAIN
(9)
CELL-LINE
(1)
LIVER
(1)
OTHER
(11)
SKIN
(1)
XRN.ip

Sense strand
CGTCCACAGAGATCCCCCAGTTCTCCTCCTGCTCCCACCGGTTCAGCAAGGTGGGCCCGGGTCCCGAGGGGAGCCACTGCTCAGAAAACATTGCATGATGTCTGTTTGCTTTCGTATCTGTTTTTTGATTTTGCTTTGTTTTGTTCTGTAGAGATGAGGTCTTGCTATGCTGCCCAGGCTGGTCTCCAACTCCTGAACTCAAGTGATCCTCCCACCTCAGCCTCCCAAAGTGCTAGGAATTGTATTGGTT
......................................................................................................................................................(((((..(((((.((......))..))))).)))))................................................................
...........................................................................................................................124.................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................................................................................TTTTGCTTTGTTTTGTTCTGTTACC.................................................................................................2520.000.0016.004.00-----------------------
................................................................................................................................TTTTGCTTTGTTTTGTTCTGTTTCC.................................................................................................256.000.004.002.00-----------------------
................................................................................................................................................................................GGCTGGTCTCCAACTCCTGAACTCTG................................................263.000.00--1.001.00----1.00----------------
............................................................................................................................................................................CCCAGGCTGGTCTCCAACTCCTGAACTCTG................................................303.000.00---1.00-2.00-------------------
..........................................................................................................................TTTTGATTTTGCTTTGTTTTGTTTTTA.....................................................................................................272.000.00-2.00-----------------------
.....................................................................................................................................................AGAGATGAGGTCTTGCTTTCC................................................................................212.000.00-2.00-----------------------
...............................................................................................................................................................................AGGCTGGTCTCCAACTCCTGAACTCTG................................................272.000.00----2.00--------------------
................................................................................................................................TTTTGCTTTGTTTTGTTCTGTTAC..................................................................................................242.000.002.00------------------------
................................................................................................................................TTTTGCTTTGTTTTGTTCTGTTGAG.................................................................................................252.000.002.00------------------------
.....................................................................................................................................CTTTGTTTTGTTCTGTTTCC.................................................................................................202.000.00-2.00-----------------------
...........................................................................................................................................................................................................TGATCCTCCCACCTCAGCCTCG.........................221.000.00-----------1.00-------------
......................................................................................................................................................................ATGCTGCCCAGGCTGGTCTCCC..............................................................221.000.001.00------------------------
.........................................................................................................................................................................CTGCCCAGGCTGGTCTCCAACTCCTCGGA....................................................291.000.00--------------------1.00----
...............................................................................................................................ATTTTGCTTTGTTTTGTTCTGTTTTT.................................................................................................261.000.00-1.00-----------------------
.......................................................................................................................................................................TGCTGCCCAGGCTGGTCTCCAACTCCGGG......................................................291.000.001.00------------------------
..........................................................................................TTGCATGATGTCTGTTTG..............................................................................................................................................1811.001.00---1.00---------------------
.............................................................................................................................................................................CCAGGCTGGTCTCCAACTCCTGAACTCTG................................................291.000.00--1.00----------------------
....................................................................................................................................................................................................ACTCAAGTGATCCTCCCACCAAG...............................231.000.00----------1.00--------------
.................................................................................................................................TTTGCTTTGTTTTGTTCTGTTGG..................................................................................................231.000.001.00------------------------
.................................................................................................................................................................................................................TCCCACCTCAGCCTCCCAAAGTGCATA..............271.000.00--1.00----------------------
.................................................................................................................................TTTGCTTTGTTTTGTTCTGTTA...................................................................................................221.000.00-1.00-----------------------
...............................................................................................................................ATTTTGCTTTGTTTTGTTCTGGC....................................................................................................231.000.00-1.00-----------------------
................................................................................................................................TTTTGCTTTGTTTTGTTCTGTTCTA.................................................................................................251.000.001.00------------------------
...............................................................................................................................ATTTTGCTTTGTTTTGTTCTGTTCTG.................................................................................................261.000.00-1.00-----------------------
..................................................................................................................................TTGCTTTGTTTTGTTCTGTTACC.................................................................................................231.000.00-1.00-----------------------
....................................................................................................................................................TAGAGATGAGGTCTTGCTTT..................................................................................201.000.00----------------------1.00--
..................................................................................................................................TTGCTTTGTTTTGTTCTGTAGAGATGAGG...........................................................................................2911.001.00-------------1.00-----------
................................................................................................................................TTTTGCTTTGTTTTGTTCTGTAACC.................................................................................................251.000.001.00------------------------
.................................................................................................................................TTTGCTTTGTTTTGTTCTGAAG...................................................................................................221.000.00-1.00-----------------------
................................................................................................................................TTTTGCTTTGTTTTGTTCTGGCTT..................................................................................................241.000.00-1.00-----------------------
.................................................................................CAGAAAACATTGCATGATGTCTGTTTG..............................................................................................................................................2711.001.00-----------------1.00-------
..................AGTTCTCCTCCTGCTCCCACCGGTTCAGC...........................................................................................................................................................................................................2911.001.00-1.00-----------------------
.............................................................................................................................................................................................CTCCTGAACTCAAGTGAACCG........................................211.000.00----------------1.00--------
...................................................................................................................................TGCTTTGTTTTGTTCTGTTACC.................................................................................................221.000.001.00------------------------
.................................................................................................................................TTTGCTTTGTTTTGTTCTGTCCAG.................................................................................................241.000.001.00------------------------
.............................................................................................................................................................................................CTCCTGAACTCAAGTGATCCTCCCACCCTAG..............................311.000.00------1.00------------------
..................................................................................................................................................................................................GAACTCAAGTGATCCTCCCGCCC.................................231.000.00---------------1.00---------
.................................................................................................................................TTTGCTTTGTTTTGTTCTGTTTCC.................................................................................................241.000.001.00------------------------
.........................................................................................................................TTTTTGATTTTGCTTTGAGC.............................................................................................................201.000.001.00------------------------
................................................................................................................................TTTTGCTTTGTTTTGTTCTGTTTGG.................................................................................................251.000.00-1.00-----------------------
................................................................................................................................TTTTGCTTTGTTTTGTTCTGTTCTG.................................................................................................251.000.00-1.00-----------------------
.................................................................................................................................TTTGCTTTGTTTTGTTCTGTTACC.................................................................................................241.000.00-1.00-----------------------
....................................................................................................TCTGTTTGCTTTCGT.......................................................................................................................................1520.500.50------0.50------------------
............................................................................................................................................TTGTTCTGTAGAGATGAG............................................................................................1830.330.33------------------------0.33

Antisense strand
CGTCCACAGAGATCCCCCAGTTCTCCTCCTGCTCCCACCGGTTCAGCAAGGTGGGCCCGGGTCCCGAGGGGAGCCACTGCTCAGAAAACATTGCATGATGTCTGTTTGCTTTCGTATCTGTTTTTTGATTTTGCTTTGTTTTGTTCTGTAGAGATGAGGTCTTGCTATGCTGCCCAGGCTGGTCTCCAACTCCTGAACTCAAGTGATCCTCCCACCTCAGCCTCCCAAAGTGCTAGGAATTGTATTGGTT
......................................................................................................................................................(((((..(((((.((......))..))))).)))))................................................................
...........................................................................................................................124.................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................................................................................................GGTCTTGCTATGCTGCCCAGGCTGGTCTGCG.............................................................. 312.000.002.00------------------------
................................................................................................................................................................................GGCTGGTCTCCAACTCCTGAACTGAG................................................ 262.000.00-2.00-----------------------
.........................................................................................................................................................................................................................CAGCCTCCCAAAGTGCTAGTCT........... 221.000.00------------1.00------------
.......................................................................................................................................................................TGCTGCCCAGGCTGGTCTCCACGGC.......................................................... 251.000.001.00------------------------
...............................................................................................................................................................................AGGCTGGTCTCCAACTCCTGAATTA.................................................. 251.000.00-------------------1.00-----
...CCACAGAGATCCCCCAC...................................................................................................................................................................................................................................... 171.000.00------------------1.00------
....................................................................................................................................................................CTATGCTGCCCAGGCTGGTCTGAG.............................................................. 241.000.00-1.00-----------------------
................................................................................................................................................................................GGCTGGTCTCCAACTCCTGACC.................................................... 221.000.00-1.00-----------------------
................................................................................................................................................................................GGCTGGTCTCCAACTCCTGAACCGG................................................. 251.000.001.00------------------------
.......................................................................................................................................................................TGCTGCCCAGGCTGGTCGAC............................................................... 201.000.00-1.00-----------------------
............TCCCCCAGTTCTCCTCCTGCTCCCACCGGTC............................................................................................................................................................................................................... 311.000.00-1.00-----------------------
..............................................................................................................................................................................................................TCCTCCCACCTCAGCCTCCCAAAGTGGAC............... 291.000.00-1.00-----------------------
................................................................................................................................................................CTTGCTATGCTGCCCAGGCCGGA................................................................... 231.000.00---------------------1.00---
.............................................................................................................................................................................................CTCCTGAACTCAAGTGATCCTCCGG.................................... 251.000.001.00------------------------
................................................................................................................................................................................GGCTGGTCTCCAACTCCTGAGGCA.................................................. 241.000.00-1.00-----------------------
................................................................................................................................................................................GGCTGGTCTCCAACTCCTGGCA.................................................... 221.000.001.00------------------------
..................................................................................................................................................................................CTGGTCTCCAACTCCTGAACTCAAGA.............................................. 261.000.00-------1.00-----------------
...................................................................................................................................................................GCTATGCTGCCCAGGCTGGTCTATA.............................................................. 251.000.00-----------------------1.00-
................................................................................................................................................................................................AGGATCACTTGAGTTCAG........................................ 1801.001.00---------1.00---------------
..........................................................................................................................................................................TGCCCAGGCTGGTCTCCAACTTCAG....................................................... 251.000.00-1.00-----------------------
.................................................................................................................................................................................GCTGGTCTCCAACTCCTGAGGTC.................................................. 231.000.001.00------------------------
................................................................................................................................................................................GGCTGGTCTCCAACTCCTGAGGCT.................................................. 241.000.001.00------------------------
.........................................................................................................................................................................CTGCCCAGGCTGGTCTCCAACTGAC........................................................ 251.000.001.00------------------------
...............................................................CAGTGGCTCCCCTCGG........................................................................................................................................................................... 1611.001.00--------------1.00----------
...................................................................................................................................................................GTTGGAGACCAGCCTGGGCAGCATAGC............................................................ 2750.200.20-------0.20-----------------
...................................................................................................................................................................TGGAGACCAGCCTGGGCAGCATAGC.............................................................. 2570.140.14-0.14-----------------------