ID: uc002nft.1_intron_5_0_chr19_17369195_r
GENE: USHBP1(8)
chr19:17369145-17369442-


(3)
AGO2.ip 		(1)
B-CELL 		(2)
BRAIN 		(1)
BREAST 		(19)
CELL-LINE 		(3)
CERVIX 		(2)
HEART 		(1)
HELA 		(1)
LIVER 		(1)
OTHER 		(2)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CAGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGAACTACAGGTGCGTACCACCACACCTTGCTAATCTTTGTCTTTTTAGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTAATCCTCCCGCCTCAGCCTCCCAAAGTGCTGGGACTACAGGTGAGGGCCATTGCACCCAGCCGAGCTGAGTGTCCTGAAGCACTCAGAACCAGTGTCCCACAGTGAACACTGTGAAGAGGCATACAGGGTTCTGCTTGCTCTGCGGGAGGCCG
................................................................................................((((.((.(((.((..(((((((..(((.....)))))))))).))))))).))))..((((..((((((((......))))).....)))..)))).........................................................................................................
.........................................................................................90......................................................................................................194......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040039(GSM532924)
G531T. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029130(GSM416759)
DLD2. (cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		GSM359196(GSM359196)
m3m7G_ip. (cell line)
........................................................................................................................................................................AAGTGCTGGGACTACAGGGGGG............................................................................................................224.000.001.003.00-----------------------------------
..............................................................................................ACGGGGTTTCACCATGTTGGTAT.....................................................................................................................................................................................232.000.00-----------2.00-------------------------
..................................................................................................................................................................................................................................ACTCAGAACCAGTGTCCCACAGTGAACA............................................2812.002.00--------------1.00---------------------1.00
.............................................TACAGGTGCGTACCACCACACTGGC....................................................................................................................................................................................................................................252.000.002.00------------------------------------
........................................................................................................................................................................AAGTGCTGGGACTACAGGTGCACG..........................................................................................................242.000.002.00------------------------------------
..................................................................................................................................................ATCCTCCCGCCTCAGCCTCCCAAAGTGGGGG.........................................................................................................................312.000.00-2.00-----------------------------------
..........................................................................................AGAGACGGGGTTTCACCATGTTGGTCAGGCCTG...............................................................................................................................................................................332.000.002.00------------------------------------
................................................................................TCTTTTTAGTAGAGACGGGTCA....................................................................................................................................................................................................221.000.001.00------------------------------------
......................................................................................................................................TGACCTCAGGTAATCCTCCAAT..............................................................................................................................................221.000.00----------1.00--------------------------
......................TCAGCCTCCTGAGTAGCTGGAAAGA...........................................................................................................................................................................................................................................................251.000.00---------------------------------1.00---
....................................................................................................................................................................................................................................TCAGAACCAGTGTCCCACAGA.................................................211.000.00-------------------------------1.00-----
..............................................................................................................TTGGTCAGGCTGGTCTCGCAA.......................................................................................................................................................................211.000.00--------------------------------1.00----
...............................................................................................................................................................AGCCTCCCAAAGTGCTGGGACTACAGGGAC.............................................................................................................301.000.00-1.00-----------------------------------
..............................................................................................ACGGGGTTTCACCATGTTGGTCAGGCTGGGCCC...........................................................................................................................................................................331.000.001.00------------------------------------
.........................................................................................................................................................................AGTGCTGGGACTACAGGTGATCTG.........................................................................................................241.000.00-1.00-----------------------------------
............................................................................................AGACGGGGTTTCACCATGTTGGTCAGCCGG................................................................................................................................................................................301.000.001.00------------------------------------
.................................................................................CTTTTTAGTAGAGACGGGGATTA..................................................................................................................................................................................................231.000.00------------------1.00------------------
............................................................................................AGACGGGGTTTCACCATGTTGGTCAGGCTGCCC.............................................................................................................................................................................331.000.00-1.00-----------------------------------
.................................................................................................................................................................CCTCCCAAAGTGCTGGGACTACAGGGGCG............................................................................................................291.000.00-1.00-----------------------------------
...............................................................................................CGGGGTTTCACCATGTTGGTCAGGCGGA...............................................................................................................................................................................281.000.00------1.00------------------------------
.............................................................................................................................................................................CTGGGACTACAGGTGAGGGGGG.......................................................................................................221.000.001.00------------------------------------
............................TCCTGAGTAGCTGGAAC.............................................................................................................................................................................................................................................................1701.001.00-----1.00-------------------------------
.........................................................................................................................................................................AGTGCTGGGACTACAGGGGCG............................................................................................................211.000.001.00------------------------------------
........................................................................................................................................................................AAGTGCTGGGACTACAGGTGAGACCC........................................................................................................261.000.001.00------------------------------------
.........................................................................................................................................................................AGTGCTGGGACTACAGGTGAACC..........................................................................................................231.000.001.00------------------------------------
...........................................................................................................................TCTCGAACTCCTGACCTCAGGTA........................................................................................................................................................2301.001.00----1.00--------------------------------
.........................................................................................................................................................................AGTGCTGGGACTACAGGGATA............................................................................................................211.000.00-----------------1.00-------------------
.............................................................................TTGTCTTTTTAGTAGA.............................................................................................................................................................................................................1601.001.00---1.00---------------------------------
............................................................................................................................................................................................................................TGAAGCACTCAGAACTCTG...........................................................191.000.00----------------------------------1.00--
........................................................................................................................................................................AAGTGCTGGGACTACAGGGGT.............................................................................................................211.000.00-----1.00-------------------------------
...............................TGAGTAGCTGGAACTCTG.........................................................................................................................................................................................................................................................181.000.00----------------1.00--------------------
......................................................................................TAGTAGAGACGGGGTTTCACCAGGCG..........................................................................................................................................................................................261.000.001.00------------------------------------
.........................................................................................................................................................................AGTGCTGGGACTACAGGTGAGCCAT........................................................................................................251.000.001.00------------------------------------
...............................................................................................................TGGTCAGGCTGGTCTCGCCA.......................................................................................................................................................................201.000.00------1.00------------------------------
.......................................................................................................................................................................AAAGTGCTGGGACTACAGGGACG............................................................................................................231.000.001.00------------------------------------
..............................................................................TGTCTTTTTAGTAGAGACGGGGTTCCG.................................................................................................................................................................................................271.000.00-1.00-----------------------------------
........................................................................................................................................................................AAGTGCTGGGACTACAGGTGAGCAGT........................................................................................................261.000.001.00------------------------------------
.........................................................................................................................................................................AGTGCTGGGACTACAGGGAAG............................................................................................................211.000.001.00------------------------------------
..............................................................................................ACGGGGTTTCACCATGTTGGTCAGGCTGCCC.............................................................................................................................................................................311.000.001.00------------------------------------
..........................................................................................................CATGTTGGTCAGGCTGGTCTCGACC.......................................................................................................................................................................251.000.00--------------------1.00----------------
.............................CCTGAGTAGCTGGAAATGA..........................................................................................................................................................................................................................................................191.000.00----------------------1.00--------------
..............................................................................................................TTGGTCAGGCTGGTCTCGAACTCGAG..................................................................................................................................................................261.000.00-------------------1.00-----------------
.........................................................................................................................................................................AGTGCTGGGACTACAGGTGGCTG..........................................................................................................231.000.001.00------------------------------------
.......................................................................................................................................................................AAAGTGCTGGGACTACAGGTGCGGG..........................................................................................................251.000.001.00------------------------------------
..................................................................................................................TCAGGCTGGTCTCGAACGCCC...................................................................................................................................................................211.000.00---------1.00---------------------------
.................................................................................................................................................................CCTCCCAAAGTGCTGGGACTACAGGTGCGGG..........................................................................................................311.000.00--1.00----------------------------------
..............................................................................................ACGGGGTTTCACCATGTTGGTCATTC..................................................................................................................................................................................261.000.001.00------------------------------------
........................................................................................................................................................................AAGTGCTGGGACTACAGGTGCCTG..........................................................................................................241.000.00-1.00-----------------------------------
........................................................................................................................................................................AAGTGCTGGGACTACAGGGGCG............................................................................................................221.000.001.00------------------------------------
..............................................................................TGTCTTTTTAGTAGAGACGGGAGT....................................................................................................................................................................................................241.000.001.00------------------------------------
.........................................................................................................................................................................AGTGCTGGGACTACAGGTGAGGCG.........................................................................................................241.000.001.00------------------------------------
..GTTCAAGTGATTCTCCTGCCTAAAA...............................................................................................................................................................................................................................................................................251.000.00-----1.00-------------------------------
...............................................................................GTCTTTTTAGTAGAGACGGGAGTT...................................................................................................................................................................................................241.000.00----------------------------1.00--------
........................................................................................GTAGAGACGGGGTTTCACCAGGT...........................................................................................................................................................................................231.000.00---------1.00---------------------------
.................................................................................................................................................................CCTCCCAAAGTGCTGGGACTACACGCG..............................................................................................................271.000.00--1.00----------------------------------
..............................................................................................ACGGGGTTTCACCATGTTGGTCAGGCGGCC..............................................................................................................................................................................301.000.00-1.00-----------------------------------
...............................................................................................................TGGTCAGGCTGGTCTCGAACGC.....................................................................................................................................................................221.000.00----1.00--------------------------------
.......................................................................................................................................................................................................ACCCAGCCGAGCTGAGA..................................................................................171.000.00-----------------------------------1.00-
..............................................................................................ACGGGGTTTCACCATGTTGGTCAGGCCTG...............................................................................................................................................................................291.000.00--1.00----------------------------------
........................................................................................................................................................................AAGTGCTGGGACTACAGGTGCGCC..........................................................................................................241.000.00-1.00-----------------------------------
................................................................................TCTTTTTAGTAGAGACGGGGGTCT..................................................................................................................................................................................................241.000.001.00------------------------------------
.......................................................................................................................................................................AAAGTGCTGGGACTACAGGAGAG............................................................................................................231.000.001.00------------------------------------
................................................................................TCTTTTTAGTAGAGACGGGGCATC..................................................................................................................................................................................................241.000.001.00------------------------------------
........................................................ACCACCACACCTTGCTAACCTT............................................................................................................................................................................................................................221.000.00--1.00----------------------------------
..............................................................................................ACGGGGTTTCACCATGTTGGTCAGGCTGGCGG............................................................................................................................................................................321.000.00-1.00-----------------------------------
.................................................................................CTTTTTAGTAGAGACCTGG......................................................................................................................................................................................................191.000.00------------------------1.00------------
.................................................................................................GGGTTTCACCATGTTGGTCAGGCTGGCCTC...........................................................................................................................................................................301.000.00---1.00---------------------------------
..............................CTGAGTAGCTGGAACTACAGG.......................................................................................................................................................................................................................................................2101.001.00-------1.00-----------------------------
......................................................................................TAGTAGAGACGGGGTTTCAGCTC.............................................................................................................................................................................................231.000.001.00------------------------------------
.......................................................................................................................................................................AAAGTGCTGGGACTACAGGTGAAG...........................................................................................................241.000.00------1.00------------------------------
.......................................................................................AGTAGAGACGGGGTTTCACCAAGCC..........................................................................................................................................................................................251.000.001.00------------------------------------
........................................................................................................................................................................AAGTGCTGGGACTACAGGTGCTAG..........................................................................................................241.000.00-1.00-----------------------------------
.....CAAGTGATTCTCCTGCCTAAAA...............................................................................................................................................................................................................................................................................221.000.00---------------1.00---------------------
........................................................................................GTAGAGACGGGGTTTCAGCA..............................................................................................................................................................................................201.000.00---1.00---------------------------------
........................................................................................................ACCATGTTGGTCAGGCTGGTATA...........................................................................................................................................................................231.000.00-----------------------------1.00-------
...........................................ACTACAGGTGCGTACCACACTC.........................................................................................................................................................................................................................................221.000.00-1.00-----------------------------------
......................................................................................................................................................................CAAAGTGCTGGGACTACAGGAGAA............................................................................................................241.000.001.00------------------------------------
...................................TAGCTGGAACTACAGGTGC....................................................................................................................................................................................................................................................1901.001.00--------------------------1.00----------
..........................................................................TCTTTGTCTTTTTAGTAGAGACGGGG......................................................................................................................................................................................................2620.500.500.50------------------------------------
....................................AGCTGGAACTACAGGTGCGTACCAC.............................................................................................................................................................................................................................................2570.140.140.14------------------------------------
.........................................................................ATCTTTGTCTTTTTAGTAGAG............................................................................................................................................................................................................2180.120.120.12------------------------------------

Antisense strand
CAGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGAACTACAGGTGCGTACCACCACACCTTGCTAATCTTTGTCTTTTTAGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTAATCCTCCCGCCTCAGCCTCCCAAAGTGCTGGGACTACAGGTGAGGGCCATTGCACCCAGCCGAGCTGAGTGTCCTGAAGCACTCAGAACCAGTGTCCCACAGTGAACACTGTGAAGAGGCATACAGGGTTCTGCTTGCTCTGCGGGAGGCCG
................................................................................................((((.((.(((.((..(((((((..(((.....)))))))))).))))))).))))..((((..((((((((......))))).....)))..)))).........................................................................................................
.........................................................................................90......................................................................................................194......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040039(GSM532924)
G531T. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029130(GSM416759)
DLD2. (cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		GSM359196(GSM359196)
m3m7G_ip. (cell line)
...........................................................................................................ATGTTGGTCAGGCTGGTCTCGAACTCGC................................................................................................................................................................... 282.000.002.00------------------------------------
.........................................................................................................................................................................AGTGCTGGGACTACAGGTCAAG........................................................................................................... 222.000.00-2.00-----------------------------------
.........................................................................................................................................................CGCCTCAGCCTCCCAAAGTGCTGGCCGC..................................................................................................................... 281.000.00--------1.00----------------------------
.................................................................................................................................................AATCCTCCCGCCTCAGCCTCCCAAAGTCTG........................................................................................................................... 301.000.00-----------------------1.00-------------
.................................................................................................GGGTTTCACCATGTTGGTGCTG................................................................................................................................................................................... 221.000.00--1.00----------------------------------
...................................................................................................................................................TCCTCCCGCCTCAGCCTCCCGTA................................................................................................................................ 231.000.00------------------------------1.00------
...........................................................................................................................................GGGAGGATTACCTGA................................................................................................................................................ 1501.001.00-------1.00-----------------------------
................................................................................................................................................TAATCCTCCCGCCTCAATG....................................................................................................................................... 191.000.00----------1.00--------------------------
...........................................................ACCACACCTTGCTAATCAC............................................................................................................................................................................................................................ 191.000.00------------1.00------------------------
................................................................................................................................................TAATCCTCCCGCCTCAGCCTTTTA.................................................................................................................................. 241.000.00---------------------1.00---------------
...................................................................................................................................................TCCTCCCGCCTCAGCCTCCCAACCC.............................................................................................................................. 251.000.00-1.00-----------------------------------
...................................................................................................................................................TCCTCCCGCCTCAGCCTCCCAAAGTGCTAAGT....................................................................................................................... 321.000.001.00------------------------------------
...................................................................................................................................................TCCTCCCGCCTCAGCCTCCCAAAGTACCC.......................................................................................................................... 291.000.00-1.00-----------------------------------
..............................................................................................ACGGGGTTTCACCATGTTGGTCAGA................................................................................................................................................................................... 251.000.00-------------------------1.00-----------
.....................................GCTGGAACTACAGGTGAACC................................................................................................................................................................................................................................................. 201.000.00-1.00-----------------------------------
....................................................................................................................................................CCTCCCGCCTCAGCCTCCCAAAGTGCCC.......................................................................................................................... 281.000.001.00------------------------------------
...............................................................................................CGGGGTTTCACCATGTTGGTCAAAC.................................................................................................................................................................................. 251.000.00---------------------------1.00---------
.....................................................................................................TTCACCATGTTGGTCAGGCTGGTCTCGAACTT..................................................................................................................................................................... 321.000.00---1.00---------------------------------
.......................................................................................................................................................................AAAGTGCTGGGACTACAGTG............................................................................................................... 201.000.00----1.00--------------------------------
...................................................................................................................................................TCCTCCCGCCTCAGCCTCCCAAGGC.............................................................................................................................. 251.000.00-1.00-----------------------------------
..........................................................................................................CATGTTGGTCAGGCTGGTCTCGAACTCGA................................................................................................................................................................... 291.000.00-1.00-----------------------------------
.....................................................................................................................................................CTCCCGCCTCAGCCTCCTTGG................................................................................................................................ 211.000.00-------------1.00-----------------------
...................................................................................................................................................TCCTCCCGCCTCAGCCTCCCAAAGTGCTGGAAG...................................................................................................................... 331.000.00--------1.00----------------------------
..........................................................................................................................................................................TGGCCCTCACCTGTAGTCCCAGCAC....................................................................................................... 2511.001.001.00------------------------------------
..........................................................................................................................................CTCAGGTAATCCTCCCGAA............................................................................................................................................. 191.000.00------------1.00------------------------