uc002nfs.1_intron_9_0_chr19_17373800

TGGTGGGAGCCTGTAATCCCAGCTACTTGGGGGACCGAGGCAGGAGAATCACTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGGCTGGGCAACAGAGTGAGACTCCGTCTCAAAAAATAAAAAAGAATTCCTTGCCCAGCATGGAGTGACTCAAGTGCCTGAGTTGGTGTCCACAGGACTGACAAGAAGATGGATGGGGGCTCTGGCAGGGAACTGGCCTCAGCCC
..................................................((((...(((((....(((((..(((((((.((((....)).))))))))))))))..))))).....))))................................................................................................................................
..................................................51.......................................................................124............................................................................................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)

DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)

SRR189782

GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)

RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)

SRR189787

SRR037937(GSM510475)
293cand2. (cell line)

SRR189786

DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)

DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR037939(GSM510477)
293cand5_rep1. (cell line)

SRR037935(GSM510473)
293cand3. (cell line)

SRR189783

DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)

SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)

SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)

SRR390723(GSM850202)
total small RNA. (cell line)

DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)

SRR060168(GSM565978)
5-8F_nucleus. (cell line)

SRR207116(GSM721078)
Nuclear RNA. (cell line)

GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)

SRR037944(GSM510482)
293DcrTN_cand5. (cell line)

DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)

SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)

SRR189784

SRR037936(GSM510474)
293cand1. (cell line)

SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)

SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)

SRR040010(GSM532895)
G529N. (cervix)

SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)

SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)

SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)

GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR033724(GSM497069)
L428 cell line (L428). (B cell)

SRR029128(GSM416757)
H520. (cell line)

SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)

TAX577741(Rovira)
total RNA. (breast)

SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)

SRR037940(GSM510478)
293cand5_rep2. (cell line)

SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)

SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)

SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)

SRR038863(GSM458546)
MM603. (cell line)

SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)

SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)

SRR040035(GSM532920)
G001T. (cervix)

TAX577745(Rovira)
total RNA. (breast)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)

..................................................................................................GCACTCCAGGCTGGGCAACAGA..................................................................................................................................

5.00

......................................................................................................TCCAGGCTGGGCAACAGATATA..............................................................................................................................

4.00

0.00

4.00

.................................................................................................TGCACTCCAGGCTGGGCAACAGTT.................................................................................................................................

4.00

0.00

3.00

1.00

.................................................................................................TGCACTCCAGGCTGGGCAACAGTAA................................................................................................................................

3.00

0.00

1.00

2.00

.................................................................................................TGCACTCCAGGCTGGGCAACAGTAT................................................................................................................................

3.00

0.00

1.00

2.00

.................................................................................................TGCACTCCAGGCTGGGCAACAGTCT................................................................................................................................

2.00

0.00

2.00

.......................................................................................ATCGCGCCACTGCACTCCAGGGGTG..........................................................................................................................................

2.00

0.00

2.00

.................................ACCGAGGCAGGAGAATCACTTGAACCTGGC...........................................................................................................................................................................................

2.00

0.00

2.00

...........................................................................CAGTGAGCCGAGATCGCGCCTA.........................................................................................................................................................

2.00

0.00

2.00

.................................................................................................................CAACAGAGTGAGACTCCGTCTTGT.................................................................................................................

2.00

0.00

2.00

.......................................................................................ATCGCGCCACTGCACTCCAGGGGGG..........................................................................................................................................

1.00

0.00

1.00

...........................................................................................CGCCACTGCACTCCAGGGGTG..........................................................................................................................................

1.00

0.00

1.00

.................................................................................................TGCACTCCAGGCTGGGCAACAGTCAA...............................................................................................................................

1.00

0.00

1.00

.......................................................................................................CCAGGCTGGGCAACAGAG.................................................................................................................................

1.00

..............................GGGACCGAGGCAGGAGACTTC.......................................................................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................AGGCTGGGCAACAGAGTGAGAACA.........................................................................................................................

1.00

0.00

1.00

.......................................................................................ATCGCGCCACTGCACTCCAGGCTGGGCGG......................................................................................................................................

1.00

0.00

1.00

.................................................................................................TGCACTCCAGGCTGGGCAACAGTAAT...............................................................................................................................

1.00

0.00

1.00

.......................................................................................ATCGCGCCACTGCACTCCAGGCTGGGCAGC.....................................................................................................................................

1.00

0.00

1.00

...................................................................................................................ACAGAGTGAGACTCCGGCCC...................................................................................................................

1.00

0.00

1.00

............................................................................................................................................................................................................................GGGGCTCTGGCAGGGCAAC...........

1.00

0.00

1.00

..................................CCGAGGCAGGAGAATCACTTGAACCCAGCGGG........................................................................................................................................................................................

1.00

0.00

1.00

........................ACTTGGGGGACCGAGGCAGGAGAATCAC......................................................................................................................................................................................................

1.00

..........................................................CCAGGAGGTGGAGGTTGCAGTGTTT.......................................................................................................................................................................

1.00

0.00

1.00

..........................................................CCAGGAGGTGGAGGTTCTT.............................................................................................................................................................................

1.00

0.00

1.00

.......................................................................................ATCGCGCCACTGCACTCCAGGCTGGGCGGC.....................................................................................................................................

1.00

0.00

1.00

.......................................................................................ATCGCGCCACTGCACTCCAGGCAGAG.........................................................................................................................................

1.00

0.00

1.00

.......................................................................................ATCGCGCCACTGCACTCCAGGCGGGC.........................................................................................................................................

1.00

0.00

1.00

.......................................................................................ATCGCGCCACTGCACTCCAGGCTGTCG........................................................................................................................................

1.00

0.00

1.00

..............................................................................................................................................................CCCAGCATGGAGTGACTCA.........................................................................

1.00

..GTGGGAGCCTGTAATCCCAGCTACTTGGGAGG........................................................................................................................................................................................................................

1.00

0.00

1.00

.................................................................................................TGCACTCCAGGCTGGGCATTT....................................................................................................................................

1.00

0.00

1.00

......................................................GAACCCAGGAGGTGGAGGTTGCAGTT..........................................................................................................................................................................

1.00

0.00

1.00

.......................................................AACCCAGGAGGTGGAGGTTGCAGTTTAT.......................................................................................................................................................................

1.00

0.00

1.00

.................................................................................................TGCACTCCAGGCTGGGCAAAAAC..................................................................................................................................

1.00

0.00

1.00

........................................................................................TCGCGCCACTGCACTCCAGGGG............................................................................................................................................

1.00

0.00

1.00

............................................................................AGTGAGCCGAGATCGCGCCTTGA.......................................................................................................................................................

1.00

0.00

1.00

.......................................................................................ATCGCGCCACTGCACTCCAGGCAGGC.........................................................................................................................................

1.00

0.00

1.00

............GTAATCCCAGCTACTTGGCTCT........................................................................................................................................................................................................................

1.00

0.00

1.00

...........................TGGGGGACCGAGGCAGGAGAATGGCG.....................................................................................................................................................................................................

1.00

0.00

1.00

............................................AGAATCACTTGAACCCAGGAGGTGGAGGTCGG..............................................................................................................................................................................

1.00

0.00

1.00

.......................................................AACCCAGGAGGTGGAGGTTGCATTGT.........................................................................................................................................................................

1.00

0.00

1.00

.................................................................................................TGCACTCCAGGCTGGGCAACAGCTT................................................................................................................................

1.00

0.00

1.00

.......................................................................................ATCGCGCCACTGCACTCCAGGCTGGGCGGCA....................................................................................................................................

1.00

0.00

1.00

............................................................................................GCCACTGCACTCCAGGCTGGG.........................................................................................................................................

1.00

.................................ACCGAGGCAGGAGAATCACCT....................................................................................................................................................................................................

1.00

0.00

1.00

...........................TGGGGGACCGAGGCAGGGG............................................................................................................................................................................................................

1.00

0.00

1.00

..................................CCGAGGCAGGAGAATCACTTGAACCCAGGGA.........................................................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................AGGCTGGGCAACAGAGG................................................................................................................................

1.00

0.00

1.00

.................................................................................................TGCACTCCAGGCTGGGCAACAGTAAC...............................................................................................................................

1.00

0.00

1.00

...........................................................................................................GCTGGGCAACAGAGTGCGGC...........................................................................................................................

1.00

0.00

1.00

..............................................................GAGGTGGAGGTTGCAGTGAGCCGAGAGAA...............................................................................................................................................................

1.00

0.00

1.00

........................................................ACCCAGGAGGTGGAGGTTGCAGTGTAA.......................................................................................................................................................................

1.00

0.00

1.00

............................................................AGGAGGTGGAGGTTGCAGTTTT........................................................................................................................................................................

1.00

0.00

1.00

.................................................................................................TGCACTCCAGGCTGGGCAACAGTC.................................................................................................................................

1.00

0.00

1.00

...............ATCCCAGCTACTTGGGGGACCGAGGCAGGAG............................................................................................................................................................................................................

0.50

..................CCAGCTACTTGGGGGACCGAGGCAGGAG............................................................................................................................................................................................................

0.33

........................ACTTGGGGGACCGAGGCAGGAG............................................................................................................................................................................................................

0.33

..............................GGGACCGAGGCAGGAGAAT.........................................................................................................................................................................................................

0.14

.................................ACCGAGGCAGGAGAATCACTTGAACCCAGGAGG........................................................................................................................................................................................

0.11

Size

Perfect hit

Total Norm

Perfect Norm

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)

DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)

SRR189782

GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)

RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)

SRR189787

SRR037937(GSM510475)
293cand2. (cell line)

SRR189786

DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)

DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR037939(GSM510477)
293cand5_rep1. (cell line)

SRR037935(GSM510473)
293cand3. (cell line)

SRR189783

DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)

SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)

SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)

SRR390723(GSM850202)
total small RNA. (cell line)

DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)

SRR060168(GSM565978)
5-8F_nucleus. (cell line)

SRR207116(GSM721078)
Nuclear RNA. (cell line)

GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)

SRR037944(GSM510482)
293DcrTN_cand5. (cell line)

DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)

SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)

SRR189784

SRR037936(GSM510474)
293cand1. (cell line)

SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)

SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)

SRR040010(GSM532895)
G529N. (cervix)

SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)

SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)

SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)

GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR033724(GSM497069)
L428 cell line (L428). (B cell)

SRR029128(GSM416757)
H520. (cell line)

SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)

TAX577741(Rovira)
total RNA. (breast)

SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)

SRR037940(GSM510478)
293cand5_rep2. (cell line)

SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)

SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)

SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)

SRR038863(GSM458546)
MM603. (cell line)

SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)

SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)

SRR040035(GSM532920)
G001T. (cervix)

TAX577745(Rovira)
total RNA. (breast)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)

.........................................................................TGCAGTGAGCCGAGATCGCGCT...........................................................................................................................................................

17.00

0.00

7.00

4.00

3.00

1.00

................................................................................AGCCGAGATCGCGCCACTGCAAT...................................................................................................................................................

7.00

0.00

1.00

3.00

2.00

1.00

.........................................................................TGCAGTGAGCCGAGATCGCGCTAA.........................................................................................................................................................

5.00

0.00

3.00

1.00

.........................................................................TGCAGTGAGCCGAGATCGCGCTAAT........................................................................................................................................................

3.00

0.00

3.00

...........................................................................................CGCCACTGCACTCCAGGCTGGGCAATA....................................................................................................................................

2.00

0.00

2.00

.............................................................GGAGGTGGAGGTTGCAGTGAGCCGAGATGTTC.............................................................................................................................................................

2.00

0.00

2.00

...............................................................................................................................TCCGTCTCAAAAAATAAAAAAGACGG.................................................................................................

2.00

0.00

2.00

................................................................................AGCCGAGATCGCGCCACTGCAAGA..................................................................................................................................................

2.00

0.00

1.00

.....................GCTACTTGGGGGACCGAGGCAGGAGAATCGGG.....................................................................................................................................................................................................

2.00

0.00

2.00

....GGGAGCCTGTAATCCCAGCTACTGCAC...........................................................................................................................................................................................................................

2.00

0.00

2.00

...............................GGACCGAGGCAGGAGAATCACTTTC..................................................................................................................................................................................................

2.00

0.00

2.00

...........................................................................CAGTGAGCCGAGATCGCGCGGGC........................................................................................................................................................

1.00

0.00

1.00

................................................................................AGCCGAGATCGCGCCACTGCAAGAA.................................................................................................................................................

1.00

0.00

1.00

...............................................................................................................................................AAAAAGAATTCCTTGGTG.........................................................................................

1.00

0.00

1.00

.........................................................................................CGCGCCACTGCACTCCAGGCTC...........................................................................................................................................

1.00

0.00

1.00

................................................................................AGCCGAGATCGCGCCACTGCAAAG..................................................................................................................................................

1.00

0.00

1.00

.................................................................GTGGAGGTTGCAGTGAGCCGAGATGTAT.............................................................................................................................................................

1.00

0.00

1.00

...........................................................................CAGTGAGCCGAGATCGCGCCACTGCACTGCTC...............................................................................................................................................

1.00

0.00

1.00

..........CTGTAATCCCAGCTACTTGGGGCAC.......................................................................................................................................................................................................................

1.00

0.00

1.00

................................................................GGTGGAGGTTGCAGTGAGCCGAGGGG................................................................................................................................................................

1.00

0.00

1.00

..................................CCGAGGCAGGAGAATAGAG.....................................................................................................................................................................................................

1.00

0.00

1.00

.......................................................................GTTGCAGTGAGCCGAGATCGCGATA..........................................................................................................................................................

1.00

0.00

1.00

................................................................................AGCCGAGATCGCGCCACTGCAGA...................................................................................................................................................

1.00

0.00

1.00

.....................................AGGCAGGAGAATCACTTGAACAAAA............................................................................................................................................................................................

1.00

0.00

1.00

.................................................................GTGGAGGTTGCAGTGAGCCGAGCG.................................................................................................................................................................

1.00

0.00

1.00

.........................................................................TGCAGTGAGCCGAGATCGCGTTTT.........................................................................................................................................................

1.00

0.00

1.00

.....GGAGCCTGTAATCCCAGCTGACC..............................................................................................................................................................................................................................

1.00

0.00

1.00

............................................................................AGTGAGCCGAGATCGCGCCACTGCACCC..................................................................................................................................................

1.00

0.00

1.00

.........................................................................TGCAGTGAGCCGAGATCGCGTAGA.........................................................................................................................................................

1.00

0.00

1.00

...........................................................CAGGAGGTGGAGGTTGCAGTGAGCCGCG...................................................................................................................................................................

1.00

0.00

1.00

..............................................................................TGAGCCGAGATCGCGCCACTGCAAT...................................................................................................................................................

1.00

0.00

1.00

.........................................................................TGCAGTGAGCCGAGATCGCGT............................................................................................................................................................

1.00

0.00

1.00

....GGGAGCCTGTAATCCCAGG...................................................................................................................................................................................................................................

1.00

0.00

1.00

..............................................................................TGAGCCGAGATCGCGCCACTAATA....................................................................................................................................................

1.00

0.00

1.00

............................................................................................CAGCCTGGAGTGCAGTGGC...........................................................................................................................................

1.00

.....GGAGCCTGTAATCCCAGCTACTGGGC...........................................................................................................................................................................................................................

1.00

0.00

1.00

.................................................................................................................CAACAGAGTGAGACTCCGTCTGCCT................................................................................................................

1.00

0.00

1.00

..............................................................................TGAGCCGAGATCGCGCCACTATT.....................................................................................................................................................

1.00

0.00

1.00

.............................GGGGACCGAGGCAGGAGG...........................................................................................................................................................................................................

1.00

0.00

1.00

........................................................................................................CAGGCTGGGCAACAGAGTGAGACTCCGTTAG...................................................................................................................

1.00

0.00

1.00

.........................................................................TGCAGTGAGCCGAGATCGCGTTA..........................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................AAAATAAAAAAGAATTCAA..............................................................................................

1.00

0.00

1.00

..............................................................................................................GGGCAACAGAGTGAGACTCCGTCTCCGG................................................................................................................

1.00

0.00

1.00

.........................................................CCCAGGAGGTGGAGGTTGCAGTGAGCCGAACC.................................................................................................................................................................

1.00

0.00

1.00

.....................................AGGCAGGAGAATCACTTGAAAA...............................................................................................................................................................................................

1.00

0.00

1.00

.............................................................................................................................................TAAAAAAGAATTCCTTGCTG.........................................................................................

1.00

0.00

1.00

.................................................CACTTGAACCCAGGAGGTGGAGGG.................................................................................................................................................................................

1.00

0.00

1.00

.........................................................................TGCAGTGAGCCGAGATCGCGCTAT.........................................................................................................................................................

1.00

0.00

1.00

................................................................GGTGGAGGTTGCAGTGAGCCGAGATGGCT.............................................................................................................................................................

1.00

0.00

1.00

.................................................................................................................CAACAGAGTGAGACTCCGACGA...................................................................................................................

1.00

0.00

1.00

.................................................................................................................CAACAGAGTGAGACTCCGTCTCAAAGCCT............................................................................................................

1.00

0.00

1.00

...........................................................................................CGCCACTGCACTCCAGGCTGGGCAAT.....................................................................................................................................

1.00

0.00

1.00

...................................................................................................CACTCCAGGCTGGGCAACAGAGTGAGCA...........................................................................................................................

1.00

0.00

1.00

.............................................................GGAGGTGGAGGTTGCAGTGAGCCGAGATGAGA.............................................................................................................................................................

1.00

0.00

1.00

.............................................................................................................................................TAAAAAAGAATTCCTTGCAC.........................................................................................

1.00

0.00

1.00

.........................................................CCCAGGAGGTGGAGGTTGCAGTGAGCCGAGAA.................................................................................................................................................................

1.00

0.00

1.00

...............................................................................................ACTGCACTCCAGGCTGGGCAACGCG..................................................................................................................................

1.00

0.00

1.00

..........................................................CCAGGAGGTGGAGGTTGCAGTGAGCCGAGCCC................................................................................................................................................................

1.00

0.00

1.00

.........................................................................TGCAGTGAGCCGAGATCGCGCTAAA........................................................................................................................................................

1.00

0.00

1.00

..............................................................................................................................CTCCGTCTCAAAAAATAAAGTCC.....................................................................................................

1.00

0.00

1.00

.............................................................GGAGGTGGAGGTTGCAGTGAGCCGAGATGTGC.............................................................................................................................................................

1.00

0.00

1.00

................................................................GGTGGAGGTTGCAGTGAGCCGAGATGGC..............................................................................................................................................................

1.00

0.00

1.00

......................................................................GGTTGCAGTGAGCCGAGATCGCGCGGAC........................................................................................................................................................

1.00

0.00

1.00

................................................................................................................................ATTCTTTTTTATTTTTTGAGACGG..................................................................................................

0.20

...........................................................................................................................TCTTTTTTATTTTTTGAGACGGAGTCT....................................................................................................

0.11