ID: uc002nfi.2_intron_3_0_chr19_17263517_f.5p
GENE: (4)
chr19:17263467-17263716+


(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(2)
B-CELL 		(9)
BRAIN 		(11)
BREAST 		(6)
CELL-LINE 		(17)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(4)
LIVER 		(1)
OTHER 		(10)
SKIN 		(1)
UTERUS

Sense strand
AAATATCTGCTTGAAAAGTCTCGCCTGGTGTCTCAGGAGAAGGATGAGAGGTAGGAGAATGTTTTCCCAGGAATCTCTGAATGCCACGCCATGTCTACGTTTCCTCCTACAGAGGAGAGAAGCAAAGCAAACGTCCTGAGGTCGGAGGAATTCTGGGGGAGGCCGTGGAGGCTCTCACAGGAGCAGGGCCTGCCCATCCATCTTCTCCCCAGACCTGCCCCTGTGGCCTCACACTTTGTCCTCATACCTC
.............................................................((..(((((((.((((((...(((.((..((((((..((((((((((....))))).)))))..))...))))..)).)))))))))..)))))))..)).........................................................................................
.......................................................56.........................................................................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782TAX577743(Rovira)
total RNA. (breast)		GSM532883(GSM532883)
G871N. (cervix)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		GSM532887(GSM532887)
G761N. (cervix)		SRR040030(GSM532915)
G013N. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		SRR040008(GSM532893)
G727N. (cervix)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		GSM532876(GSM532876)
G547T. (cervix)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040036(GSM532921)
G243N. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532877(GSM532877)
G691N. (cervix)		TAX577588(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040016(GSM532901)
G645N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040039(GSM532924)
G531T. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR040014(GSM532899)
G623N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040006(GSM532891)
G601N. (cervix)		SRR040038(GSM532923)
G531N. (cervix)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040012(GSM532897)
G648N. (cervix)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM532879(GSM532879)
G659N. (cervix)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040022(GSM532907)
G575N. (cervix)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
............................................................GTTTTCCCAGGAATCCCA............................................................................................................................................................................1820.000.00-5.001.00--2.003.00-1.00----1.00-2.00---------1.00-----1.00---------------1.00-1.00--1.00---------------
............................................................GTTTTCCCAGGAATCCA.............................................................................................................................................................................1710.000.00--3.00-4.00-----1.00--------1.00-------------1.00----------------------------------
............................................................GTTTTCCCAGGAATCCCC............................................................................................................................................................................188.000.00-2.00---1.00-1.00-2.00---------------------------------1.00--1.00---------------------
..............................................AGAGGTAGGAGAATGTATAG........................................................................................................................................................................................208.000.007.00----------------------------------------------------1.00--------------
........................................................................................................................................TGAGGTCGGAGGAATTCTGGATC...........................................................................................234.000.00---4.00----------------------------------------------------------------
...............................................GAGGTAGGAGAATGTTTTGTT......................................................................................................................................................................................213.000.00-----------1.00-------------------------1.00-------------------1.00----------
...............................................GAGGTAGGAGAATGTATA.........................................................................................................................................................................................182.000.00-----------------1.00--------------------------1.00-----------------------
............................................................GTTTTCCCAGGAATCCCAT...........................................................................................................................................................................192.000.00----------------1.00-1.00-------------------------------------------------
...............................................GAGGTAGGAGAATGTATAG........................................................................................................................................................................................192.000.00-----------1.00-----1.00--------------------------------------------------
..................................AGGAGAAGGATGAGAGGAAC....................................................................................................................................................................................................202.000.00-----------------------1.00-----1.00--------------------------------------
............................................................GTTTTCCCAGGAATCCCTA...........................................................................................................................................................................192.000.00-1.00---------------------------------------1.00--------------------------
.................................CAGGAGAAGGATGAGAGGAA.....................................................................................................................................................................................................2021.501.50------------------------------------------------------------1.000.50------
.................................CAGGAGAAGGATGAGAGG.......................................................................................................................................................................................................1821.501.50--------------------------------------------------1.00------------0.50----
............................TGTCTCAGGAGAAGGATGA...........................................................................................................................................................................................................1911.001.00---------------------------------------1.00----------------------------
...........................................................TGTTTTCCCAGGAATCCCA............................................................................................................................................................................191.000.00--------------------------1.00-----------------------------------------
..............................................AGAGGTAGGAGAATGCAT..........................................................................................................................................................................................181.000.001.00-------------------------------------------------------------------
..................................................GTAGGAGAATGTTTTCATGT....................................................................................................................................................................................201.000.00------------------------------------------------------1.00-------------
....................TCGCCTGGTGTCTCAGGAGAAGGATGAGAG........................................................................................................................................................................................................3011.001.00---------------------------------------------------1.00----------------
............................................TGAGAGGTAGGAGAATG.............................................................................................................................................................................................1711.001.00-----------------------------------------------------------1.00--------
...............................................GAGGTAGGAGAATGTTTAGT.......................................................................................................................................................................................201.000.00-------------------------------------------------------1.00------------
.........................................................................................................................................................TGGGGGAGGCCGTGGCCG...............................................................................181.000.00--------1.00-----------------------------------------------------------
...............................................GAGGTAGGAGAATGTATAT........................................................................................................................................................................................191.000.00---------------------------1.00----------------------------------------
...........................................................TGTTTTCCCAGGAATCCCT............................................................................................................................................................................191.000.00----------------1.00---------------------------------------------------
..............................................AGAGGTAGGAGAATGTAT..........................................................................................................................................................................................181.000.00------------------------------------------------1.00-------------------
................................................................................................................................................GAGGAATTCTGGGGGAGGCC......................................................................................2011.001.00--------------------1.00-----------------------------------------------
..............................................AGAGGTAGGAGAATGTCCAG........................................................................................................................................................................................201.000.001.00-------------------------------------------------------------------
...............................................GAGGTAGGAGAATGTTTAGGT......................................................................................................................................................................................211.000.00------------------------------1.00-------------------------------------
...............................................GAGGTAGGAGAATGTATAC........................................................................................................................................................................................191.000.00-----------------------------------1.00--------------------------------
................................................AGGTAGGAGAATGTTTTGTT......................................................................................................................................................................................201.000.00------------------------1.00-------------------------------------------
............................................................GTTTTCCCAGGAATCCCAA...........................................................................................................................................................................191.000.00-------1.00------------------------------------------------------------
.........................................................................................................................................................TGGGGGAGGCCGTGGAATAG.............................................................................201.000.001.00-------------------------------------------------------------------
............................................................................................................................................................GGGAGGCCGTGGAGGCGAT...........................................................................191.000.00----------1.00---------------------------------------------------------
........................................................................................................................................TGAGGTCGGAGGAATAGT................................................................................................181.000.001.00-------------------------------------------------------------------
...........................................................TGTTTTCCCAGGAATCCC.............................................................................................................................................................................181.000.00------------1.00-------------------------------------------------------
......................GCCTGGTGTCTCAGGAGAAGGATGAGAGGAACT...................................................................................................................................................................................................331.000.00----------------------------1.00---------------------------------------
...............................................................................................................................................GGAGGAATTCTGGGGCGGG........................................................................................191.000.00---------------------1.00----------------------------------------------
.....................CGCCTGGTGTCTCAGGAGAAGGATGAGAGGAACT...................................................................................................................................................................................................341.000.00------------------1.00-------------------------------------------------
............................................................................................................ACAGAGGAGAGAAGCAAAGAAGC.......................................................................................................................231.000.00----------------------------------1.00---------------------------------
............................................................GTTTTCCCAGGAATCCCCT...........................................................................................................................................................................191.000.00------------1.00-------------------------------------------------------
....................................................................................................................................................................GTGGAGGCTCTCACAGGAGCAGGG..............................................................2411.001.00----------------------------------------------------------1.00---------
............................................................GTTTTCCCAGGAATCCCG............................................................................................................................................................................181.000.00--------------------------------1.00-----------------------------------
................................TCAGGAGAAGGATGAGAGG.......................................................................................................................................................................................................1911.001.00--------------------1.00-----------------------------------------------
............................................................GTTTTCCCAGGAATCCG.............................................................................................................................................................................171.000.00-1.00------------------------------------------------------------------
........................................................................................................................................TGAGGTCGGAGGAATGG.................................................................................................171.000.001.00-------------------------------------------------------------------
...............................................................................................................................................................................CACAGGAGCAGGGCCTGC.........................................................1811.001.00--------1.00-----------------------------------------------------------
............................................................GTTTTCCCAGGAATCCAA............................................................................................................................................................................181.000.00-------1.00------------------------------------------------------------
...............................................GAGGTAGGAGAATGTTTAGGC......................................................................................................................................................................................211.000.00--------------------------------------------------------1.00-----------
..............................................AGAGGTAGGAGAATGCAAA.........................................................................................................................................................................................191.000.00----------------------------------------1.00---------------------------
.............................................................TTTTCCCAGGAATCTCT............................................................................................................................................................................1740.750.75---------0.250.25-----------------------------------------------------0.25---
............................................................GTTTTCCCAGGAATCTCT............................................................................................................................................................................1820.500.50--------------------------------------------------------------0.50-----
............................................................GTTTTCCCAGGAATCTTT............................................................................................................................................................................1860.500.17---------0.50----------------------------------------------------------
.............................................................................................................................................................GGAGGCCGTGGAGGCT.............................................................................1650.200.20-----------------------------------------------------------------0.20--
......................................................................GAATCTCTGAATGCC.....................................................................................................................................................................1550.200.20------------------------------------------------------------------0.20-
............................................................GTTTTCCCAGGAATCT..............................................................................................................................................................................1660.170.17-------------------------------------------------------------------0.17

Antisense strand
AAATATCTGCTTGAAAAGTCTCGCCTGGTGTCTCAGGAGAAGGATGAGAGGTAGGAGAATGTTTTCCCAGGAATCTCTGAATGCCACGCCATGTCTACGTTTCCTCCTACAGAGGAGAGAAGCAAAGCAAACGTCCTGAGGTCGGAGGAATTCTGGGGGAGGCCGTGGAGGCTCTCACAGGAGCAGGGCCTGCCCATCCATCTTCTCCCCAGACCTGCCCCTGTGGCCTCACACTTTGTCCTCATACCTC
.............................................................((..(((((((.((((((...(((.((..((((((..((((((((((....))))).)))))..))...))))..)).)))))))))..)))))))..)).........................................................................................
.......................................................56.........................................................................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782TAX577743(Rovira)
total RNA. (breast)		GSM532883(GSM532883)
G871N. (cervix)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		GSM532887(GSM532887)
G761N. (cervix)		SRR040030(GSM532915)
G013N. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		SRR040008(GSM532893)
G727N. (cervix)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		GSM532876(GSM532876)
G547T. (cervix)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040036(GSM532921)
G243N. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532877(GSM532877)
G691N. (cervix)		TAX577588(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040016(GSM532901)
G645N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040039(GSM532924)
G531T. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR040014(GSM532899)
G623N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040006(GSM532891)
G601N. (cervix)		SRR040038(GSM532923)
G531N. (cervix)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040012(GSM532897)
G648N. (cervix)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM532879(GSM532879)
G659N. (cervix)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040022(GSM532907)
G575N. (cervix)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
................................................................................ATGCCACGCCATGTCTACCAT..................................................................................................................................................... 212.000.00--------------2.00-----------------------------------------------------
...............................................GAGGTAGGAGAATGTCTG......................................................................................................................................................................................... 181.000.00--------------------------------------1.00-----------------------------
...............................................................................................................................................................................CACAGGAGCAGGGCCCGC......................................................... 181.000.00------------------------------------------1.00-------------------------
..........................................................................................................................................................................................GGGAGAAGATGGATGGGCAGGCC......................................... 2311.001.00---------------------------------------------1.00----------------------
.........................................................................................................................................................................................................................................CTTTGTCCTCATACCTCAA 191.000.00-------------------1.00------------------------------------------------
................................................AGGTAGGAGAATGTTAG......................................................................................................................................................................................... 171.000.00----------------------1.00---------------------------------------------
..................................................GTAGGAGAATGTTTTCGCA..................................................................................................................................................................................... 191.000.00------------------------------------1.00-------------------------------
...................................................................................................TTTCCTCCTACAGAGAGG..................................................................................................................................... 181.000.00-------------1.00------------------------------------------------------