ID: uc002ned.2_intron_7_0_chr19_16606664_r
GENE: CALR3(1)
chr19:16606614-16606899-


(1)
B-CELL 		(10)
BREAST 		(8)
CELL-LINE 		(18)
CERVIX 		(1)
HEART 		(1)
HELA 		(1)
LIVER 		(1)
OTHER 		(21)
SKIN 		(1)
XRN.ip

Sense strand
GCGAGTGGCGCTGGCTACCGTCTATTTCCAAGAGGAATTTCTAGACGGAGGTGAAGGGGCCACGCCCGTGGTGGCGGAGGTGTAAGCTCCCCCATCTCCGCCCCCTAAGGCTGGCCAGAGTCGCCACGGGGTCCACGGCAGCGAACCCTCGAATCCTCGAGGGTCCCCTTCACCCTTCCCTTAGCCCAAATTAACCATTATCACCTCTAACCGGTGTTATTTCCCCTTCCCCACAGAGCATTGGAGAAACCGATGGTTGCAGTCCACCAATGACTCCCGATTTGGG
.....................................................................................(((.((........(((((....(((.(((....))))))..)))))....)).)))..((((((((....))))))))..........................................................................................................................
.....................................................................................86...........................................................................................................195.........................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040012(GSM532897)
G648N. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR040024(GSM532909)
G613N. (cervix)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532883(GSM532883)
G871N. (cervix)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		GSM532889(GSM532889)
G576N. (cervix)		SRR040030(GSM532915)
G013N. (cervix)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191637(GSM715747)
99genomic small RNA (size selected RNA from t. (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR191636(GSM715746)
105genomic small RNA (size selected RNA from . (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040009(GSM532894)
G727T. (cervix)		SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040022(GSM532907)
G575N. (cervix)		SRR191583(GSM715693)
97genomic small RNA (size selected RNA from t. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR040032(GSM532917)
G603N. (cervix)		TAX577589(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........................................................................................CCCATCTCCGCCCCCCGGC.................................................................................................................................................................................1917.000.00--3.00-1.002.00-1.001.00--1.001.00---------1.00---1.00-1.00--1.00------1.00---------1.00---1.00---------
......................................................................................CTCCCCCATCTCCGCCCC......................................................................................................................................................................................1819.009.00-------1.001.00--1.001.00---1.001.00-----1.00-----1.00-------------1.00------------------
...............................GAGGAATTTCTAGACGGAGG...........................................................................................................................................................................................................................................2017.007.006.001.00------------------------------------------------------------
..........................................................................................CCCATCTCCGCCCCCCGG..................................................................................................................................................................................187.000.00----1.00--------1.00-------1.00-----------1.00-----1.00-1.00------------1.00-------
...............................GAGGAATTTCTAGACGGAGGT..........................................................................................................................................................................................................................................2114.004.004.00-------------------------------------------------------------
......................................................................................CTCCCCCATCTCCGCCCCCCGGC.................................................................................................................................................................................233.000.00--1.00-------------1.00----------1.00----------------------------------
...........................................GACGGAGGTGAAGGGGCCAC...............................................................................................................................................................................................................................2013.003.00--------------2.00--------------------------------1.00--------------
........................................................................................CCCCCATCTCCGCCCCCCGGC.................................................................................................................................................................................213.000.00--1.00------------1.00----1.00-----------------------------------------
...........................................GACGGAGGTGAAGGGGCCA................................................................................................................................................................................................................................1912.002.00---------2.00----------------------------------------------------
.......................................................................................TCCCCCATCTCCGCCCC......................................................................................................................................................................................1712.002.00--------------------------------1.00--------------------1.00--------
................ACCGTCTATTTCCAAGAG............................................................................................................................................................................................................................................................1812.002.00---2.00----------------------------------------------------------
..............................................................................................TCTCCGCCCCCTAAGGCTGTT...........................................................................................................................................................................212.000.00----------2.00---------------------------------------------------
.............................................................................................................................................................................CCTTCCCTTAGCCCACCA...............................................................................................181.000.00------------------------------------1.00-------------------------
...............................GAGGAATTTCTAGACGGATG...........................................................................................................................................................................................................................................201.000.001.00-------------------------------------------------------------
......................TATTTCCAAGAGGAATTTCTAGACGGAGGTGAA.......................................................................................................................................................................................................................................3311.001.00--------------------------------------------------1.00-----------
........................................CTAGACGGAGGTGAAGGGGCCA................................................................................................................................................................................................................................2211.001.00-------------------------------------1.00------------------------
......................................TTCTAGACGGAGGTGAAGGG....................................................................................................................................................................................................................................2011.001.001.00-------------------------------------------------------------
................ACCGTCTATTTCCAAG..............................................................................................................................................................................................................................................................1611.001.00---1.00----------------------------------------------------------
......................................................................................CTCCCCCATCTCCGCCCCCCG...................................................................................................................................................................................211.000.00-----1.00--------------------------------------------------------
..........................TCCAAGAGGAATTTCTAGA.................................................................................................................................................................................................................................................1911.001.00-1.00------------------------------------------------------------
..............................................................................................TCTCCGCCCCCTAAGGCTGGTTT.........................................................................................................................................................................231.000.00----------------------------------------------1.00---------------
.......................................................................................TCCCCCATCTCCGCCCCC.....................................................................................................................................................................................1811.001.00---------------1.00----------------------------------------------
......................................................................................CTCCCCCATCTCCGCCCCCCC...................................................................................................................................................................................211.000.00------------------------------------------1.00-------------------
........................................................................................CCCCCATCTCCGCCCCCCGG..................................................................................................................................................................................201.000.00-------------------------1.00------------------------------------
...........................................GACGGAGGTGAAGGGGC..................................................................................................................................................................................................................................1711.001.001.00-------------------------------------------------------------
................................AGGAATTTCTAGACGGAGGT..........................................................................................................................................................................................................................................2011.001.001.00-------------------------------------------------------------
.................................................................CCGTGGTGGCGGAGGTGG...........................................................................................................................................................................................................181.000.00-----------------------------------1.00--------------------------
.......................................................................................TCCCCCATCTCCGCCCCCC....................................................................................................................................................................................1911.001.00------1.00-------------------------------------------------------
..........................................................................................CCCATCTCCGCCCCCCGA..................................................................................................................................................................................181.000.00------1.00-------------------------------------------------------
..................................................................................................................................................CCTCGAATCCTCGAGGG...........................................................................................................................1711.001.00---------------------------------------------------1.00----------
............................................................................................................GGCTGGCCAGAGTCGAGTG...............................................................................................................................................................191.000.00--------------------------------------------1.00-----------------
........................................CTAGACGGAGGTGAAGGGG...................................................................................................................................................................................................................................1911.001.00-1.00------------------------------------------------------------
.......................................TCTAGACGGAGGTGAAGGGGC..................................................................................................................................................................................................................................2111.001.00-1.00------------------------------------------------------------
.................CCGTCTATTTCCAAGA.............................................................................................................................................................................................................................................................1611.001.00----1.00---------------------------------------------------------
...................................AATTTCTAGACGGAGGTG.........................................................................................................................................................................................................................................1811.001.00-1.00------------------------------------------------------------
.......................................................................................TCCCCCATCTCCGCCC.......................................................................................................................................................................................1611.001.00------------------1.00-------------------------------------------
.........................................................................................CCCCATCTCCGCCCCCCGGC.................................................................................................................................................................................2081.000.12--0.12---------------0.120.120.12------------------------------------0.120.120.12-0.12
.......................................................................................TCCCCCATCTCCGCCCCCCTGC.................................................................................................................................................................................2211.001.00------------------------------1.00-------------------------------
.......................................................................................TCCCCCATCTCCGCCCCCCG...................................................................................................................................................................................2011.001.00-------------1.00------------------------------------------------
............................................ACGGAGGTGAAGGGGCCA................................................................................................................................................................................................................................1811.001.00------------------------1.00-------------------------------------
......................................................................................CTCCCCCATCTCCGCC........................................................................................................................................................................................1630.330.33-----------------0.33--------------------------------------------
......................................................................................CTCCCCCATCTCCGCCTC......................................................................................................................................................................................1830.330.33-------------------------------------------------------0.33------
.......................................................................................TCCCCCATCTCCGCC........................................................................................................................................................................................1550.200.20--------------------------------------------------------0.20-----
........................................................................................CCCCCATCTCCGCCCC......................................................................................................................................................................................1670.140.14------0.14-------------------------------------------------------
.........................................................................................CCCCATCTCCGCCCCC.....................................................................................................................................................................................1680.120.12-------0.12------------------------------------------------------
.........................................................................................CCCCATCTCCGCCCCCCGG..................................................................................................................................................................................1980.120.12------------------------------------------------------------0.12-

Antisense strand
GCGAGTGGCGCTGGCTACCGTCTATTTCCAAGAGGAATTTCTAGACGGAGGTGAAGGGGCCACGCCCGTGGTGGCGGAGGTGTAAGCTCCCCCATCTCCGCCCCCTAAGGCTGGCCAGAGTCGCCACGGGGTCCACGGCAGCGAACCCTCGAATCCTCGAGGGTCCCCTTCACCCTTCCCTTAGCCCAAATTAACCATTATCACCTCTAACCGGTGTTATTTCCCCTTCCCCACAGAGCATTGGAGAAACCGATGGTTGCAGTCCACCAATGACTCCCGATTTGGG
.....................................................................................(((.((........(((((....(((.(((....))))))..)))))....)).)))..((((((((....))))))))..........................................................................................................................
.....................................................................................86...........................................................................................................195.........................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040012(GSM532897)
G648N. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR040024(GSM532909)
G613N. (cervix)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532883(GSM532883)
G871N. (cervix)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		GSM532889(GSM532889)
G576N. (cervix)		SRR040030(GSM532915)
G013N. (cervix)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191637(GSM715747)
99genomic small RNA (size selected RNA from t. (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR191636(GSM715746)
105genomic small RNA (size selected RNA from . (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040009(GSM532894)
G727T. (cervix)		SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040022(GSM532907)
G575N. (cervix)		SRR191583(GSM715693)
97genomic small RNA (size selected RNA from t. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR040032(GSM532917)
G603N. (cervix)		TAX577589(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........................................................................................CCCATCTCCGCCCCCCGGA................................................................................................................................................................................. 191.000.00----------------------------------1.00---------------------------
......................................................................................................................................................................................................................................................GTGGACTGCAACCATCGGTTT................... 2111.001.00-------------------------------------------------1.00------------
.......................................................................................................................................................................................................................................................GTGGACTGCAACCATCGGTT................... 2011.001.00-1.00------------------------------------------------------------
...................GTCTATTTCCAAGAGCTC......................................................................................................................................................................................................................................................... 181.000.00---------------------------------------------1.00----------------
................................................................................................................GGCCAGAGTCGCCACGCGA........................................................................................................................................................... 191.000.00-------------------1.00------------------------------------------
..........................................................................................CCCATCTCCGCCCCCCGCC................................................................................................................................................................................. 191.000.00----------------------------------------1.00---------------------