ID: uc002nca.2_intron_2_0_chr19_16134346_f.3p
GENE: (3)
chr19:16135041-16135290+


(1)
BRAIN
(6)
CELL-LINE
(1)
HEART
(6)
OTHER
(5)
SKIN
(1)
TESTES

Sense strand
CACCATTGCACCCCAGCCTGGGCAACAAGAGTGAAACTCCATCTCAAAAAACAAAAAACAAACAAAAAAGAAGCTTCTGGAAATAAGCCCGTGGGTCCTCAGGGCAGGTGCTGAGCACATGTGTGCTGGACATGCTGCAGATCAGGCAGGGGAACCAGGGGAAAGACTCTTCCAAGCCCCACCACTGCCACCTTCCACAGTGCCCTGCTTTTGCCCTCGAAGCTCGCTGAAGGGGACCCATCTCTGCAAG
.........................................................................((((((.......((((.(((....))))))).....((((((((((((.......))))).)))...)))).))))))..................................................................................................
..................................................51...................................................................................................152................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189786SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR343336SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR189785SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782
..............................................................................................................................TGGACATGCTGCAGATCAGGCAGGGG..................................................................................................26137.0037.0037.00-------------------
........................................................................................................................................................................................................................TCGAAGCTCGCTGAAGGGGACCCATC........26116.0016.0016.00-------------------
...........................................................................................................................TGCTGGACATGCTGCAGATCAGGCA......................................................................................................2517.007.007.00-------------------
..............................................................................................................................TGGACATGCTGCAGATCAGGCAGGGGAAC...............................................................................................2916.006.006.00-------------------
...........................................................................TCTGGAAATAAGCCCGTGGGTCCTCAGGGC.................................................................................................................................................3013.003.003.00-------------------
.........ACCCCAGCCTGGGCAACAAGAGTGAAACCATC.................................................................................................................................................................................................................322.000.00-2.00------------------
..........................................................CAAACAAAAAAGAAGAGT..............................................................................................................................................................................182.000.00-----2.00--------------
..........................................................................................................................GTGCTGGACATGCTGCAGATCAGGCA......................................................................................................2612.002.002.00-------------------
..............................................................................................................................TGGACATGCTGCAGATCAGGCAGGGGGAC...............................................................................................2912.0037.002.00-------------------
.........ACCCCAGCCTGGGCAACAAGCAG..........................................................................................................................................................................................................................232.000.00--2.00-----------------
..............................................................................................................................TGGACATGCTGCAGATCAGGCAGGG...................................................................................................2512.002.002.00-------------------
......TGCACCCCAGCCTGGGCAACAAGGGCG.........................................................................................................................................................................................................................272.000.00-2.00------------------
.........ACCCCAGCCTGGGCAACAAGAGTGAATC.....................................................................................................................................................................................................................282.000.00--2.00-----------------
..................................................................................................................................................................................................................TTGCCCTCGAAGCTCGCTGAAGGGGA..............2611.001.001.00-------------------
..............................................................................................................................TGGACATGCTGCAGATCAGGCAGGGGAA................................................................................................2811.001.001.00-------------------
....ATTGCACCCCAGCCTGCGGG..................................................................................................................................................................................................................................201.000.00--------1.00-----------
..........................................CTCAAAAAACAAAAAACAACG...........................................................................................................................................................................................211.000.00------------1.00-------
............................................................AACAAAAAAGAAGCTTCTGGAAATAAGC..................................................................................................................................................................2811.001.001.00-------------------
.....TTGCACCCCAGCCTGGGCAACGAAA............................................................................................................................................................................................................................251.000.00---1.00----------------
........................................................................................................................................................................................................................TCGAAGCTCGCTGAAGGGGACCCAT.........2511.001.001.00-------------------
..............AGCCTGGGCAACAAGAGTGAAACTCCATCTCCT...........................................................................................................................................................................................................331.000.00-1.00------------------
...........................................................................................................................TGCTGGACATGCTGCTGGT............................................................................................................191.000.00-------1.00------------
............................................CAAAAAACAAAAAACAAACAAAAAAGAAGCTT..............................................................................................................................................................................3211.001.001.00-------------------
..............................................................................................................................TGGACATGCTGCAGATCAGG........................................................................................................2011.001.001.00-------------------
.......................................................................................................................................................................................................................CTCGAAGCTCGCTGAG...................161.000.00----------1.00---------
.............................................................................TGGAAATAAGCCCGTGGGTCC........................................................................................................................................................2111.001.001.00-------------------
........................................................................................................................................................................................................................TCGAAGCTCGCTGAAGGGGACCCATCTCTGC...3111.001.001.00-------------------
..............................................................................................................................TGGACATGCTGCAGATCAGGCAGGGC..................................................................................................2611.002.001.00-------------------
......................................................AAAACAAACAAAAAAGAAGCTTCTGGAAATAAGC..................................................................................................................................................................3411.001.001.00-------------------
..............................................................................................................................TGGACATGCTGCAGATCAGGCAGGGGGACC..............................................................................................3011.0037.001.00-------------------
...................................................................................................................................ATGCTGCAGATCAGGCAGGGGGAC...............................................................................................241.000.001.00-------------------
.........ACCCCAGCCTGGGCAACAAGAGTGAAACC....................................................................................................................................................................................................................291.000.00-1.00------------------
.................................................................................................................................................................................................................TTTGCCCTCGAAGCTCGCTGAAGGG................2511.001.001.00-------------------
.................................................................................................................................................................................................TCCACAGTGCCCTGCTTTTGCCCTCGAAGC...........................3011.001.001.00-------------------
..............................................................................................................................TGGACATGCTGCAGATCAGGCAGGGGG.................................................................................................2711.0037.001.00-------------------
........................................................................................................................GTGTGCTGGACATGCTGCAGATCAG.........................................................................................................2511.001.001.00-------------------
..........................................................................................................................GTGCTGGACATGCTGCAGATCAGGC.......................................................................................................2511.001.001.00-------------------
..................................................................AAAGAAGCTTCTGGAAATAAGCCC................................................................................................................................................................2411.001.001.00-------------------
...........................................................................................................................TGCTGGACATGCTGCAGATCAGGCAT.....................................................................................................2611.007.001.00-------------------
.....TTGCACCCCAGCCTGGGCAACGTAA............................................................................................................................................................................................................................251.000.00---1.00----------------
.......................................................................................................................................................................................................................CTCGAAGCTCGCTGAAGGGGACCCATC........2711.001.001.00-------------------
..............................................................................................................................TGGACATGCTGCAGATCAGGCAGGGGA.................................................................................................2711.001.001.00-------------------
...................................................................................................................CACATGTGTGCTGGACATGCTGCAGA.............................................................................................................2611.001.001.00-------------------
..........................................................................................................................GTGCTGGACATGCTGCAGATCAGGCAGG....................................................................................................2811.001.001.00-------------------
....ATTGCACCCCAGCCTGGGCAACAAGAGTGC........................................................................................................................................................................................................................301.000.00--1.00-----------------
..............................................................................................................................TGGACATGCTGCAGATCAGGCAGGGGGA................................................................................................2811.0037.001.00-------------------
........CACCCCAGCCTGGGCAACAAGGGCG.........................................................................................................................................................................................................................251.000.00-1.00------------------
....ATTGCACCCCAGCCTGGGCTG.................................................................................................................................................................................................................................211.000.00------1.00-------------
..............................................................................................................................................................................................................................CTCGCTGAAGGGGACCCATCTCTGC...2511.001.001.00-------------------
...........................................TCAAAAAACAAAAAACAAACAAAAAAGAAGC................................................................................................................................................................................3111.001.001.00-------------------
..................................................................................................................................................................................CCACCACTGCCACCTAT.......................................................171.000.00----------------1.00---
.....................................................................................................................CATGTGTGCTGGACATGCTGCAGATC...........................................................................................................2611.001.001.00-------------------
...........................................................................................................................TGCTGGACATGCTGCAGATCAGGC.......................................................................................................2411.001.001.00-------------------
.........................................................................................................................TGTGCTGGACATGCTGCAGATCAGGC.......................................................................................................2611.001.001.00-------------------
.....TTGCACCCCAGCCTGGGCAACAAGAGTGG........................................................................................................................................................................................................................291.000.00--1.00-----------------
.....TTGCACCCCAGCCTGGGCTCTA...............................................................................................................................................................................................................................221.000.00---1.00----------------
........................................................................................................................................................................................................................TCGAAGCTCGCTGAAGGGGACCC...........2311.001.001.00-------------------
............................................................AACAAAAAAGAAGCTGGGA...........................................................................................................................................................................191.000.00-----------1.00--------
..............................................................................................................................TGGACATGCTGCAGATCAGGCAGGGA..................................................................................................2611.002.001.00-------------------
...................................................................................................................CACATGTGTGCTGGACATGCTGCAGATC...........................................................................................................2811.001.001.00-------------------
................................................................AAAAAGAAGCTTCTGGAAATAAGCCC................................................................................................................................................................2611.001.001.00-------------------
........................................................................GCTTCTGGAAATAAGC..................................................................................................................................................................1640.250.25-------------------0.25
..............................................................................................................................TGGACATGCTGCAGAT............................................................................................................1660.170.170.17-------------------
..............................................................................................................CTGAGCACATGTGTGC............................................................................................................................1670.140.140.14-------------------

Antisense strand
CACCATTGCACCCCAGCCTGGGCAACAAGAGTGAAACTCCATCTCAAAAAACAAAAAACAAACAAAAAAGAAGCTTCTGGAAATAAGCCCGTGGGTCCTCAGGGCAGGTGCTGAGCACATGTGTGCTGGACATGCTGCAGATCAGGCAGGGGAACCAGGGGAAAGACTCTTCCAAGCCCCACCACTGCCACCTTCCACAGTGCCCTGCTTTTGCCCTCGAAGCTCGCTGAAGGGGACCCATCTCTGCAAG
.........................................................................((((((.......((((.(((....))))))).....((((((((((((.......))))).)))...)))).))))))..................................................................................................
..................................................51...................................................................................................152................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189786SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR343336SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR189785SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782
........................................................................................................................................................................................................TGCCCTGCTTTTGCCCGGC............................... 193.000.00--------------1.001.00--1.00-
...............................................AAAACAAAAAACAAACAAAAAAGACC................................................................................................................................................................................. 263.000.00-3.00------------------
..............................................AAAAACAAAAAACAAACAACGAG..................................................................................................................................................................................... 232.000.00--2.00-----------------
.......GCACCCCAGCCTGGGCAACAGGCG........................................................................................................................................................................................................................... 242.000.00-1.001.00-----------------
..............................................AAAAACAAAAAACAAACAAACGAG.................................................................................................................................................................................... 242.000.00-1.001.00-----------------
.................................................AACAAAAAACAAACAAAAAAGAAGCTGT............................................................................................................................................................................. 282.000.00--2.00-----------------
.............................................AAAAAACAAAAAACAAACAAAAAAGTCC................................................................................................................................................................................. 281.000.00--1.00-----------------
..............................................AAAAACAAAAAACAAACAAAAAACGAG................................................................................................................................................................................. 271.000.00--1.00-----------------
...............................................AAAACAAAAAACAAACAAAAAAGCTG................................................................................................................................................................................. 261.000.00-1.00------------------
...............................................AAAACAAAAAACAAACAAAAAAGAAGTC............................................................................................................................................................................... 281.000.00-1.00------------------
....................................................AAAAAACAAACAAAAAAGACGGG............................................................................................................................................................................... 231.000.00--1.00-----------------
........................................................AACAAACAAAAAAGAAGCTTCTC........................................................................................................................................................................... 231.000.00--1.00-----------------
.................................................AACAAAAAACAAACAAAAAACCCT................................................................................................................................................................................. 241.000.00-1.00------------------
..................................................ACAAAAAACAAACAAAAAAGCCTG................................................................................................................................................................................ 241.000.00-1.00------------------
........................................................................................................................................................................................................TGCCCTGCTTTTGCCCTGGC.............................. 201.000.00-------------1.00------
.................................................AACAAAAAACAAACAAAAAACTGG................................................................................................................................................................................. 241.000.00--1.00-----------------
..............................................AAAAACAAAAAACAAACAAAAAAGCAGC................................................................................................................................................................................ 281.000.00--1.00-----------------
.............................................AAAAAACAAAAAACAAACAAAAAAGTCAG................................................................................................................................................................................ 291.000.00----1.00---------------
..............................................AAAAACAAAAAACAAACAAAAAAGCGAG................................................................................................................................................................................ 281.000.00-1.00------------------
.......GCACCCCAGCCTGGGCAACACG............................................................................................................................................................................................................................. 221.000.00--1.00-----------------
...............GCCTGGGCAACAAGAGTGAGGAC.................................................................................................................................................................................................................... 231.000.00-1.00------------------
..............................................AAAAACAAAAAACAAACAAAAAACACC................................................................................................................................................................................. 271.000.00--1.00-----------------
..AGGCTGGGGTGCAATGG....................................................................................................................................................................................................................................... 1701.001.00---------1.00----------
..............................................AAAAACAAAAAACAAACAAAAAATCC.................................................................................................................................................................................. 261.000.00-1.00------------------
................................................AAACAAAAAACAAACAAAAAAGC................................................................................................................................................................................... 231.000.00--1.00-----------------
...............................................AAAACAAAAAACAAACAAAAAAGAAGG................................................................................................................................................................................ 271.000.00--1.00-----------------
..............................................AAAAACAAAAAACAAACAAACTCT.................................................................................................................................................................................... 241.000.00-1.00------------------
.............................................AAAAAACAAAAAACAAACAAAAAAGATCTG............................................................................................................................................................................... 301.000.00-1.00------------------
...................................................CAAAAAACAAACAAAAAAGAAGGG............................................................................................................................................................................... 241.000.00-1.00------------------
...............................................AAAACAAAAAACAAACAAAAAAGACTG................................................................................................................................................................................ 271.000.00-1.00------------------
...CATTGCACCCCAGCCTGGGCAACGTG............................................................................................................................................................................................................................. 261.000.00--1.00-----------------
..............................................AAAAACAAAAAACAAACAAAAAAGAACG................................................................................................................................................................................ 281.000.00-1.00------------------
...................................................CAAAAAACAAACAAAAAAGAAAGTC.............................................................................................................................................................................. 251.000.00-1.00------------------
...............GCCTGGGCAACAAGAGTGAAACTGAAG................................................................................................................................................................................................................ 271.000.00-1.00------------------
....................................................AAAAAACAAACAAAAAAGAAGCTTGAG........................................................................................................................................................................... 271.000.00-1.00------------------
..........CCCCAGCCTGGGCAACAAGAGTGAGCGC.................................................................................................................................................................................................................... 281.000.00-1.00------------------
................................................AAACAAAAAACAAACAAAAAAAGCT................................................................................................................................................................................. 251.000.00--1.00-----------------
............................................CAAAAAACAAAAAACAAACAAAAAAGAATT................................................................................................................................................................................ 301.000.00-1.00------------------
.............................................AAAAAACAAAAAACAAACAAAAAAGATAGG............................................................................................................................................................................... 301.000.00-1.00------------------
.............................................AAAAAACAAAAAACAAACAAAAACTTG.................................................................................................................................................................................. 271.000.00--1.00-----------------
........CACCCCAGCCTGGGCAACTTT............................................................................................................................................................................................................................. 211.000.00-----------------1.00--
..............................................AAAAACAAAAAACAAACAAAAAAGAGC................................................................................................................................................................................. 271.000.00--1.00-----------------
..........CCCCAGCCTGGGCAACAAAGG........................................................................................................................................................................................................................... 211.000.00--1.00-----------------
.................................................AACAAAAAACAAACAAAAAAGCTCC................................................................................................................................................................................ 251.000.00-1.00------------------
....ATTGCACCCCAGCCTGGGCTGCG............................................................................................................................................................................................................................... 231.000.00----1.00---------------
......TGCACCCCAGCCTGGGCAACACGGC........................................................................................................................................................................................................................... 251.000.00-1.00------------------
..CCATTGCACCCCAGCCTGGGCAAGTGG............................................................................................................................................................................................................................. 271.000.00-1.00------------------
..............................................AAAAACAAAAAACAAACAAAAACCG................................................................................................................................................................................... 251.000.00--1.00-----------------
...........................................................AAACAAAAAAGAAGCTAGG............................................................................................................................................................................ 191.000.00--1.00-----------------
......TGCACCCCAGCCTGGGCAATGAC............................................................................................................................................................................................................................. 231.000.00--1.00-----------------
...........CCCAGCCTGGGCAACAAGAGTGAAACTCGC................................................................................................................................................................................................................. 301.000.00-1.00------------------
...............................................AAAACAAAAAACAAACAAAAAAGAAGGT............................................................................................................................................................................... 281.000.00-1.00------------------
.............................................TTCTTTTTTGTTTGTTTTTTGTTTTTT.................................................................................................................................................................................. 2780.250.25-0.12--0.12---------------
.............................................AAAAAACAAAAAACAAACAAAAAAGAACCTT.............................................................................................................................................................................. 310.250.00--0.25-----------------
............................................TCTTTTTTGTTTGTTTTTTGTTTTTTG................................................................................................................................................................................... 2770.140.14--0.14-----------------
.............................................AAAAAACAAAAAACAAACAAAAAAGAAACC............................................................................................................................................................................... 300.120.00-0.12------------------