ID: uc002nbe.2_intron_1_0_chr19_15562920_r.3p
GENE: RASAL3(16)
chr19:15562870-15563119-


(1)
AGO2.ip
(1)
BRAIN
(5)
BREAST
(9)
CELL-LINE
(3)
CERVIX
(3)
HEART
(1)
HELA
(2)
LIVER
(1)
OTHER
(22)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
TGATTGATAGGTCCTGTCATTCCAACCATTCCCGTCTCTGGTCCGACCCTTCTTCAAGCATATTTAGGCCCCGCCCCTCAGTCTGGACAAGCTCCGCCTCCACTCCAAGCTCCGCCCCCGGAGTCCCTGGCACTCCCACCAGGAGCTGGAAGGGACTTCCTTAGCCTCTGCCCTTCGCCCCAATCCCCCGACCCCCACAGGAGCTCAGAGTTTGATTCAGAGCACAACCTAACAAGCAATGAAGGGCACA
....................................................................................(((..((..((...((((((((..((((((....))))))...(((.....)))...)))).)))).))..)))))..........................................................................................
...................................................................................84.................................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189782SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR189783SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
...........................................................................................................................................CAGGAGCTGGAAGGGACTTCCTTT.......................................................................................24113.004.0010.001.00-------2.00----------------------------------------
................................................................................................................CGCCCCCGGAGTCCCGC.........................................................................................................................177.000.00---1.00------1.00---1.00-------------1.00--1.00---1.00-------1.00------
............................................................................................................................................AGGAGCTGGAAGGGACTTCC..........................................................................................2016.006.005.001.00------------------------------------------------
...............................................................................................................CCGCCCCCGGAGTCCCGCG........................................................................................................................1915.001.00--1.00--1.00-------1.00-------------------------------1.00--1.00-
...........................................................................................................................................CAGGAGCTGGAAGGGACTTCCTT........................................................................................2314.004.00----------------2.00----1.00-------1.00--------------------
................................................................................................................CGCCCCCGGAGTCCCGCG........................................................................................................................184.000.00------1.00-1.00-------------1.00-------1.00-------------------
...............................................................................................................CCGCCCCCGGAGTCCCGC.........................................................................................................................1813.001.00--1.001.00-------------1.00--------------------------------
...........................................................................................................................................CAGGAGCTGGAAGGGACTTCCTTA.......................................................................................2412.002.00-2.00------------------------------------------------
...............................................................................................................CCGCCCCCGGAGTCCCG..........................................................................................................................1712.001.00--1.00---1.00-------------------------------------------
...............................................................................................................CCGCCCCCGGAGTCCCGCGG.......................................................................................................................2012.001.00-----1.00--------------------------1.00-----------------
................................................................................................................CGCCCCCGGAGTCCCGCGG.......................................................................................................................192.000.00------------------------------------1.001.00------------
............................................................................................................................................AGGAGCTGGAAGGGACTTCCTT........................................................................................2212.002.00-------------------------1.00--------------1.00---------
.........................................................................CCCCTCAGTCTGGACG.................................................................................................................................................................162.000.00-------1.00----------------------------------1.00-------
...........................................................................................................................................CAGGAGCTGGAAGGGACTTCA..........................................................................................211.000.00-----------------1.00--------------------------------
........................................................................................AAGCTCCGCCTCCACACC................................................................................................................................................181.000.00----1.00---------------------------------------------
............................................................................................................................................AGGAGCTGGAAGGGACTTCCTTTT......................................................................................2411.002.00-1.00------------------------------------------------
.........................................................................................................................................ACCAGGAGCTGGAAGGGACTTCCT.........................................................................................2411.001.00---------------1.00----------------------------------
............................................................................................................................................AGGAGCTGGAAGGGACTTCCTTAT......................................................................................241.000.00---------------1.00----------------------------------
............................................................................................................................................AGGAGCTGGAAGGGACTTCCTTT.......................................................................................2311.002.00---------------------------1.00----------------------
............................................................................................................................................AGGAGCTGGAAGGGAGAGA...........................................................................................191.000.00----------------------------------------------1.00---
...........................................................................................................................................CAGGAGCTGGAAGGGACTTCCT.........................................................................................2211.001.00---------------------------------------1.00----------
............................................................................CTCAGTCTGGACAAGC..............................................................................................................................................................1611.001.00-----------------------------------------------1.00--
.........................................................................CCCCTCAGTCTGGACGG................................................................................................................................................................171.000.00-------------------1.00------------------------------
............................................................................................................GCTCCGCCCCCGGAGCCCC...........................................................................................................................191.000.00-----------1.00--------------------------------------
..............................................................................................................................................................................................................AGAGTTTGATTCAGAGCA..........................1811.001.00--------------------------------------------1.00-----
........................................................................................AAGCTCCGCCTCCACGCC................................................................................................................................................181.000.00----1.00---------------------------------------------
...........................................................................................................................................CAGGAGCTGGAAGGGACTTCC..........................................................................................2111.001.00--------------------1.00-----------------------------
...........................................................................................................................................CAGGAGCTGGAAGGGACT.............................................................................................1811.001.00--------------------------1.00-----------------------
............................................................................................................................................AGGAGCTGGAAGGGACTTCCT.........................................................................................2111.001.00------------------------1.00-------------------------
.........................................................................................................CAAGCTCCGCCCCCGGGGG..............................................................................................................................191.000.00----1.00---------------------------------------------
.............................................................................................................CTCCGCCCCCGGAGTCCCGCG........................................................................................................................211.000.00-------1.00------------------------------------------
...............................................................................................................CCGCCCCCGGAGTCCC...........................................................................................................................1611.001.00--------------1.00-----------------------------------
...........................................................................................................................................CAGGAGCTGGAAGGGACTTT...........................................................................................201.000.00--------------------------------------1.00-----------
..............................................................................................................TCCGCCCCCGGAGTCCCGC.........................................................................................................................191.000.00---1.00----------------------------------------------
...............................................................................................................CCGCCCCCGGAGTCCCGCTG.......................................................................................................................2011.001.00----------------------------------1.00---------------
...............................................................................................................CCGCCCCCGGAGTCC............................................................................................................................1530.330.33-------------------------------------------------0.33
...........................................................................................................AGCTCCGCCCCCGGA................................................................................................................................1540.250.25------------------0.25-------------------------------

Antisense strand
TGATTGATAGGTCCTGTCATTCCAACCATTCCCGTCTCTGGTCCGACCCTTCTTCAAGCATATTTAGGCCCCGCCCCTCAGTCTGGACAAGCTCCGCCTCCACTCCAAGCTCCGCCCCCGGAGTCCCTGGCACTCCCACCAGGAGCTGGAAGGGACTTCCTTAGCCTCTGCCCTTCGCCCCAATCCCCCGACCCCCACAGGAGCTCAGAGTTTGATTCAGAGCACAACCTAACAAGCAATGAAGGGCACA
....................................................................................(((..((..((...((((((((..((((((....))))))...(((.....)))...)))).)))).))..)))))..........................................................................................
...................................................................................84.................................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189782SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR189783SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
..........GTCCTGTCATTCCAAACAT............................................................................................................................................................................................................................. 191.000.00--------1.00-----------------------------------------
..............................................................................................................................................GAGCTGGAAGGGACTGACA......................................................................................... 191.000.00------------1.00-------------------------------------
..................................................................................................................................................................................................................TTTGATTCAGAGCACGTG...................... 181.000.00----------1.00---------------------------------------
...........TGGTTGGAATGACAGGA.............................................................................................................................................................................................................................. 1711.001.00-----------------------------------------1.00--------
............................................................................................................GCTCCGCCCCCGGAGTACCC.......................................................................................................................... 201.000.00------------------1.00-------------------------------
..................................................................................................................CCCCCGGAGTCCCTGGATGG.................................................................................................................... 201.000.00---------------------------------1.00----------------
.........................................................................................................................AGTCCCTGGCACTCCCACGCCG........................................................................................................... 221.000.00-----------1.00--------------------------------------
..............................CCCGTCTCTGGTCCGCCG.......................................................................................................................................................................................................... 181.000.00-------------1.00------------------------------------
......................................................................................................................CGGAGTCCCTGGCACTAA.................................................................................................................. 181.000.00------------1.00-------------------------------------
.....................................................................................GACAAGCTCCGCCTCCAAC.................................................................................................................................................. 191.000.00-----------------------1.00--------------------------