ID: uc002mxc.1_intron_0_0_chr19_13858769_f.5p
GENE: CCDC130(1)
chr19:13858719-13858968+


(1)
AGO1.ip OTHER.mut 		(11)
B-CELL 		(2)
BRAIN 		(14)
BREAST 		(22)
CELL-LINE 		(12)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(4)
HELA 		(1)
KIDNEY 		(3)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(27)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CAGCGCGCACTTCCGGGCACGGTCAGGGCGTGACGTCGGGAGGAGGGCAGGTAAGTGCCGGCGGGCGGAGGAGCGGGGAGGGCCGGGGGTCCGGCAGCCGCCTCACCCTGGCCTCGGAGCTGCCCGGCGCGCCCTTCCGCGTCGGGGGACGCGGAGCTGAGGACCCGATTTAGATGCCCGGAGCCGGCCCAGGTCCCAGCCAGGACCAAAGTCCCTGAGGCCCCAGCTGAGACCTCTGACCCAAGTGCCC
.............................................................................((.((((((((....(((....)))...))))))))))...(((((((((.((.....((((((((....)))))))).(((((.......)))))..)))))).)).)))..............................................................
...........................................................................76...............................................................................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM532876(GSM532876)
G547T. (cervix)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040007(GSM532892)
G601T. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040015(GSM532900)
G623T. (cervix)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577746(Rovira)
total RNA. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR040017(GSM532902)
G645T. (cervix)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR189787SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR040021(GSM532906)
G761T_2. (cervix)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR040016(GSM532901)
G645N. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR038855(GSM458538)
D10. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786SRR040032(GSM532917)
G603N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040031(GSM532916)
G013T. (cervix)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR040039(GSM532924)
G531T. (cervix)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR040035(GSM532920)
G001T. (cervix)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
......................................................................................................................................................................GATTTAGATGCCCGGAGCC.................................................................1917.007.007.00---------------------------------------------------------------------------------------------------------
.............................GTGACGTCGGGAGGAGGG...........................................................................................................................................................................................................1815.005.00---1.00-----------------------1.00--------------------------------------------1.00--1.001.00-----------------------------
..................................GTCGGGAGGAGGGCAGGTAAG...................................................................................................................................................................................................2114.004.00-------2.00-1.00------------------1.00-----------------------------------------------------------------------------
.......................................GAGGAGGGCAGGTAAGTGC................................................................................................................................................................................................1913.003.00-----2.00-----------------------------------------------1.00----------------------------------------------------
.......................................GAGGAGGGCAGGTAAGTG.................................................................................................................................................................................................1823.003.00--------0.50------------------0.50--------------------1.00----------------------------------------------0.500.50---------
..................ACGGTCAGGGCGTGACGTC.....................................................................................................................................................................................................................1913.003.00------1.00--1.00----------------1.00-------------------------------------------------------------------------------
................................................................................GGCCGGGGGTCCGGCGC.........................................................................................................................................................173.000.00--3.00-------------------------------------------------------------------------------------------------------
................GCACGGTCAGGGCGTGACGTCGG...................................................................................................................................................................................................................2313.003.00------------3.00---------------------------------------------------------------------------------------------
...........................GCGTGACGTCGGGAGGAGGG...........................................................................................................................................................................................................2013.003.00---1.00------------------1.00-------------1.00---------------------------------------------------------------------
...........................................AGGGCAGGTAAGTGCCGG.............................................................................................................................................................................................1813.003.00-----1.00--1.00-----------------------------------------------------------1.00-------------------------------------
..................ACGGTCAGGGCGTGACGT......................................................................................................................................................................................................................1813.003.00-------------1.00-------2.00------------------------------------------------------------------------------------
.............................GTGACGTCGGGAGGAGGGC..........................................................................................................................................................................................................1913.003.00----------------1.00------------1.00--------------------------------------------1.00-------------------------------
....................................CGGGAGGAGGGCAGGTAAGTG.................................................................................................................................................................................................2113.003.00----1.00---------------1.00---------------------------------------------------------1.00---------------------------
...........................GCGTGACGTCGGGAGGAGGGC..........................................................................................................................................................................................................2112.002.00-----------------------1.00-------------------------------------------1.00--------------------------------------
..........................GGCGTGACGTCGGGAGGA..............................................................................................................................................................................................................1812.002.00---2.00------------------------------------------------------------------------------------------------------
...........................GCGTGACGTCGGGAGGAG.............................................................................................................................................................................................................1812.002.00--------1.00------------------------------------------------------1.00------------------------------------------
..............................TGACGTCGGGAGGAGGGC..........................................................................................................................................................................................................1812.002.00--------------------------------------1.00------1.00------------------------------------------------------------
................................................................................GGCCGGGGGTCCGGCAC.........................................................................................................................................................172.000.00--2.00-------------------------------------------------------------------------------------------------------
..................................................................................................................................................................ACCCGATTTAGATGCCCGG.....................................................................1912.002.00-2.00--------------------------------------------------------------------------------------------------------
...............................GACGTCGGGAGGAGGGCA.........................................................................................................................................................................................................1812.002.00-1.00--------------------------------------------1.00-----------------------------------------------------------
.................................CGTCGGGAGGAGGGCAGGTAAGTGC................................................................................................................................................................................................2512.002.00--------------2.00-------------------------------------------------------------------------------------------
...........................GCGTGACGTCGGGAGG...............................................................................................................................................................................................................1612.002.00---------------1.00------------------------------------1.00-----------------------------------------------------
........ACTTCCGGGCACGGTCAGGGCG............................................................................................................................................................................................................................2212.002.00--------------------------1.00-------------------------------1.00-----------------------------------------------
........................................................................GCGGGGAGGGCCGGGGGT................................................................................................................................................................1812.002.00-----1.001.00---------------------------------------------------------------------------------------------------
................GCACGGTCAGGGCGTGACGT......................................................................................................................................................................................................................2012.002.00-------------------------2.00--------------------------------------------------------------------------------
..............................................................................AGGGCCGGGGGTCCGGC...........................................................................................................................................................1712.002.00-2.00--------------------------------------------------------------------------------------------------------
..................................GTCGGGAGGAGGGCAGGT......................................................................................................................................................................................................1812.002.00----1.00----1.00------------------------------------------------------------------------------------------------
.....................GTCAGGGCGTGACGTCGGGAGGATGG...........................................................................................................................................................................................................261.000.00----------------------------------------1.00-----------------------------------------------------------------
................................ACGTCGGGAGGAGGGCAGG.......................................................................................................................................................................................................1911.001.00-1.00--------------------------------------------------------------------------------------------------------
...................................................................................................................................................................CCCGATTTAGATGCCCGG.....................................................................1811.001.00-1.00--------------------------------------------------------------------------------------------------------
.............................................................CGGGCGGAGGAGCGGGGAGGG........................................................................................................................................................................2111.001.00--------------------------------------------------------------------------------1.00-------------------------
.............CGGGCACGGTCAGGGCGTGACG.......................................................................................................................................................................................................................2211.001.00-----------1.00----------------------------------------------------------------------------------------------
..................................GTCGGGAGGAGGGCAGGTAA....................................................................................................................................................................................................2011.001.00----1.00-----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGTCCCTGAGGCCCCAGC.......................1811.001.00-----------------------------------------1.00----------------------------------------------------------------
..................................GTCGGGAGGAGGGCAGGTAAGTGCCGGCGGGC........................................................................................................................................................................................3211.001.00---------------------------------------------------------------------------------1.00------------------------
..................................GTCGGGAGGAGGGCAGGTAAGTGCCGG.............................................................................................................................................................................................2711.001.00---------------------------------------------------1.00------------------------------------------------------
.............................GTGACGTCGGGAGGAGGGCAGACAA....................................................................................................................................................................................................251.000.00----------------1.00-----------------------------------------------------------------------------------------
..........................................................CGGCGGGCGGAGGAGGGCC.............................................................................................................................................................................191.000.00-----------------------------------------------------------------------1.00----------------------------------
....................................................................................................................................................ACGCGGAGCTGAGGACCCGACT................................................................................221.000.00-------------------------------------------------------------1.00--------------------------------------------
............CCGGGCACGGTCAGGGCG............................................................................................................................................................................................................................1811.001.00-----------1.00----------------------------------------------------------------------------------------------
.............................GTGACGTCGGGAGGAGGGTT.........................................................................................................................................................................................................2011.005.00------------------------------------------------------1.00---------------------------------------------------
............................................................................................................TGGCCTCGGAGCTGCCCGG...........................................................................................................................1911.001.001.00---------------------------------------------------------------------------------------------------------
..........................................GAGGGCAGGTAAGTGCCGGCGGGCGA......................................................................................................................................................................................261.000.00-----------------------------------------------------------------------------------------1.00----------------
.......................................GAGGAGGGCAGGTAAGTGT................................................................................................................................................................................................1921.003.00---1.00------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................TCCCTGAGGCCCCAGCTTGTG..................211.000.00-------------------------------------------------------------------------------1.00--------------------------
...........................GCGTGACGTCGGGAGGAGGGCATG.......................................................................................................................................................................................................241.000.00------------------1.00---------------------------------------------------------------------------------------
.........................GGGCGTGACGTCGGGAGGAGG............................................................................................................................................................................................................2111.001.00-----------1.00----------------------------------------------------------------------------------------------
.............................GTGACGTCGGGAGGAG.............................................................................................................................................................................................................1611.001.00---------------1.00------------------------------------------------------------------------------------------
..................................GTCGGGAGGAGGGCAGGTAAGTGCC...............................................................................................................................................................................................2511.001.00-------1.00--------------------------------------------------------------------------------------------------
.....................................................................................................................................CTTCCGCGTCGGGGGAGGA..................................................................................................191.000.00-----------------------------------------------1.00----------------------------------------------------------
...........................................................................GGGAGGGCCGGGGGTCCGGCAGCC.......................................................................................................................................................2411.001.00-----------------1.00----------------------------------------------------------------------------------------
..............................TGACGTCGGGAGGAGGG...........................................................................................................................................................................................................1711.001.00------1.00---------------------------------------------------------------------------------------------------
................................................................................................................................................GGGGACGCGGAGCTGAGG........................................................................................1811.001.00-------1.00--------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................AGGACCAAAGTCCCTGAGGCCCCAGCTGA....................2911.001.00-------------------------------------------------------1.00--------------------------------------------------
.............CGGGCACGGTCAGGGCGTGAC........................................................................................................................................................................................................................2111.001.00----------1.00-----------------------------------------------------------------------------------------------
.................CACGGTCAGGGCGTGACGTC.....................................................................................................................................................................................................................2011.001.00----------------------------------1.00-----------------------------------------------------------------------
........................AGGGCGTGACGTCGGGAATTT.............................................................................................................................................................................................................211.000.00--------------------------------------------------------1.00-------------------------------------------------
............................................................................................................TGGCCTCGGAGCTGCCCGGCG.........................................................................................................................2111.001.00---------------------------------------------------------------------------------------1.00------------------
.................CACGGTCAGGGCGTGACGTCGGGA.................................................................................................................................................................................................................2411.001.00--------------------1.00-------------------------------------------------------------------------------------
............CCGGGCACGGTCAGGTTT............................................................................................................................................................................................................................181.000.00---------------------------------1.00------------------------------------------------------------------------
.............................GTGACGTCGGGAGGA..............................................................................................................................................................................................................1511.001.00-------------1.00--------------------------------------------------------------------------------------------
.............................GTGACGTCGGGAGGAGGGCAGGTAAGTGCCGGC............................................................................................................................................................................................3311.001.00-------------------------------------------------------------------------1.00--------------------------------
............................CGTGACGTCGGGAGGAGGGCAGGTAAG...................................................................................................................................................................................................2711.001.00-----------------------------------------------------------------------------------1.00----------------------
...............................................................................GGGCCGGGGGTCCGGCAGCCG......................................................................................................................................................2111.001.00-------------------------------------------1.00--------------------------------------------------------------
..............GGGCACGGTCAGGGCGTGACGTCGG...................................................................................................................................................................................................................2511.001.00------------------------------------------------------------------------------------------1.00---------------
.............................GTGACGTCGGGAGGAGGGCA.........................................................................................................................................................................................................2011.001.00----------------------1.00-----------------------------------------------------------------------------------
....................................................................................................................................................ACGCGGAGCTGAGGACCCGATTTAGATGCCCGG.....................................................................3311.001.00------------------------1.00---------------------------------------------------------------------------------
..............................................................................................................................................................GAGGACCCGATTTAGATGCC........................................................................2011.001.00-----------------------1.00----------------------------------------------------------------------------------
...............................................................................................................................................................................................................................CAGCTGAGACCTCTGACCCAAGT....2311.001.00----------------------------------------------------------------1.00-----------------------------------------
............................................................GCGGGCGGAGGAGCGGGGAGGG........................................................................................................................................................................2211.001.00------------------------------1.00---------------------------------------------------------------------------
.....................................................................................GGGGTCCGGCAGCCGCCTCACCC..............................................................................................................................................2311.001.00--------------------------------------------------------------------------------------1.00-------------------
...............................GACGTCGGGAGGAGGGCAGGTAAGTGCC...............................................................................................................................................................................................2811.001.00-1.00--------------------------------------------------------------------------------------------------------
..........................................................CGGCGGGCGGAGGAGGG...............................................................................................................................................................................171.000.00----------------------------------------------------------------------------------1.00-----------------------
....................................CGGGAGGAGGGCAGGTAAG...................................................................................................................................................................................................1911.001.00--------1.00-------------------------------------------------------------------------------------------------
....................................................................................................................GAGCTGCCCGGCGCGCTCTC..................................................................................................................201.000.00-------------------1.00--------------------------------------------------------------------------------------
.............................GTGACGTCGGGAGGAGGGCAGGTAAGTG.................................................................................................................................................................................................2811.001.00------------------------------------------------------------1.00---------------------------------------------
...............................................................................GGGCCGGGGGTCCGGCAGC........................................................................................................................................................1911.001.00-----------------------------------------------------------------------------1.00----------------------------
...........................................................................................................CTGGCCTCGGAGCTGCCCGGC..........................................................................................................................2111.001.001.00---------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................ATTTAGATGCCCGGAGCC.................................................................1811.001.00------1.00---------------------------------------------------------------------------------------------------
..................................GTCGGGAGGAGGGCAGGTAAGTGCCGGCGGG.........................................................................................................................................................................................3111.001.00--------------------------------------------------------------1.00-------------------------------------------
........................................AGGAGGGCAGGTAAGTGCCGG.............................................................................................................................................................................................2111.001.00---------------------------------------1.00------------------------------------------------------------------
..................................GTCGGGAGGAGGGCAGGTAAGTGCCGGTGGG.........................................................................................................................................................................................3111.001.00----------------------------------------------------------------------------------------1.00-----------------
................................ACGTCGGGAGGAGGGCAGGTAAGTGCC...............................................................................................................................................................................................2711.001.00-1.00--------------------------------------------------------------------------------------------------------
.................................................................CGGAGGAGCGGGGAGGGC.......................................................................................................................................................................1821.001.00---0.50------------------------------------------------------------------------------------------0.50-----------
....................................................................................................................................CCTTCCGCGTCGGGGGAG....................................................................................................181.000.00--------------------------------------------------------------------------------------------1.00-------------
............................CGTGACGTCGGGAGGAGGGCAGGTAAGT..................................................................................................................................................................................................2811.001.00------------------------------------------------------------------1.00---------------------------------------
.........................GGGCGTGACGTCGGGAG................................................................................................................................................................................................................1711.001.00-----------------------------------1.00----------------------------------------------------------------------
........................................................................GCGGGGAGGGCCGGGGGCTG..............................................................................................................................................................201.000.00-------------------1.00--------------------------------------------------------------------------------------
................................................................................GGCCGGGGGTCCGGCACC........................................................................................................................................................181.000.00---------------------------------------------------------------------1.00------------------------------------
............................................................................................................................................................CTGAGGACCCGATTTAGATGC.........................................................................2111.001.00-----------------1.00----------------------------------------------------------------------------------------
...................................................................................................................GGAGCTGCCCGGCGCGC......................................................................................................................1711.001.00------------------------------------------1.00---------------------------------------------------------------
...........................................................................................................CTGGCCTCGGAGCTGCCCGGCG.........................................................................................................................2211.001.00-------------------------------1.00--------------------------------------------------------------------------
..................................GTCGGGAGGAGGGCAGGGGT....................................................................................................................................................................................................201.000.001.00---------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................ACCAAAGTCCCTGAGGCGCA..........................201.000.00--------------------------------------------1.00-------------------------------------------------------------
...........................................................................................................................................CGTCGGGGGACGCGGGT..............................................................................................171.000.00------------------------------------------------------------------------------------1.00---------------------
...........TCCGGGCACGGTCAGGGCG............................................................................................................................................................................................................................1911.001.00---------------------------------------------------------1.00------------------------------------------------
.................................................................CGGAGGAGCGGGGAGGGACG.....................................................................................................................................................................201.000.00-----------------------------------------------------------------1.00----------------------------------------
.............CGGGCACGGTCAGGGCGTGACGTCGG...................................................................................................................................................................................................................2611.001.00----------1.00-----------------------------------------------------------------------------------------------
................................................................................................................CTCGGAGCTGCCCGGCGCG.......................................................................................................................1911.001.00-------------------------------------1.00--------------------------------------------------------------------
..........................GGCGTGACGTCGGGAGGAGGG...........................................................................................................................................................................................................2111.001.00----1.00-----------------------------------------------------------------------------------------------------
......................................................................................................................................................................GATTTAGATGCCCGGAGTC.................................................................191.000.001.00---------------------------------------------------------------------------------------------------------
...................CGGTCAGGGCGTGACGTCGGGAGGAGGGC..........................................................................................................................................................................................................2911.001.00-------------------------------------------------------------------------------------1.00--------------------
.................CACGGTCAGGGCGTGACGT......................................................................................................................................................................................................................1911.001.00-----------------------------------------------------------1.00----------------------------------------------
....................................................................................................................GAGCTGCCCGGCGCGGCGT...................................................................................................................191.000.00--1.00-------------------------------------------------------------------------------------------------------
.......................................................TGCCGGCGGGCGGAGCGTA................................................................................................................................................................................191.000.00-------------------------------------------------------------------------------------------1.00--------------
................................................................GCGGAGGAGCGGGGAGGGCA......................................................................................................................................................................2020.500.50----------------------------0.50-----------------------------------------------------------------------------
...............................GACGTCGGGAGGAGGG...........................................................................................................................................................................................................1620.500.50-------------0.50--------------------------------------------------------------------------------------------
.........................................................................CGGGGAGGGCCGGGGGTC...............................................................................................................................................................1820.500.50-------------------------------------------------------------------------------------------------0.50--------
................................................................GCGGAGGAGCGGGGAGGGC.......................................................................................................................................................................1920.500.50--------------------------------------------------------------------------------------------------0.50-------
......................................GGAGGAGGGCAGGTAAG...................................................................................................................................................................................................1730.330.33---------------------------------------------------------------------------------------------------0.33------
.............................................GGCAGGTAAGTGCCG..............................................................................................................................................................................................1550.200.20-------------------------------------------------------------------------------------------------------0.20--
...................................TCGGGAGGAGGGCAGG.......................................................................................................................................................................................................1650.200.20------------------------------------------------------------------------------------------------------0.20---
.................................................................................................................................................GGGACGCGGAGCTGAG.........................................................................................1650.200.20-----------------------------------------------------------------------------------------------------0.20----

Antisense strand
CAGCGCGCACTTCCGGGCACGGTCAGGGCGTGACGTCGGGAGGAGGGCAGGTAAGTGCCGGCGGGCGGAGGAGCGGGGAGGGCCGGGGGTCCGGCAGCCGCCTCACCCTGGCCTCGGAGCTGCCCGGCGCGCCCTTCCGCGTCGGGGGACGCGGAGCTGAGGACCCGATTTAGATGCCCGGAGCCGGCCCAGGTCCCAGCCAGGACCAAAGTCCCTGAGGCCCCAGCTGAGACCTCTGACCCAAGTGCCC
.............................................................................((.((((((((....(((....)))...))))))))))...(((((((((.((.....((((((((....)))))))).(((((.......)))))..)))))).)).)))..............................................................
...........................................................................76...............................................................................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM532876(GSM532876)
G547T. (cervix)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040007(GSM532892)
G601T. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040015(GSM532900)
G623T. (cervix)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577746(Rovira)
total RNA. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR040017(GSM532902)
G645T. (cervix)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR189787SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR040021(GSM532906)
G761T_2. (cervix)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR040016(GSM532901)
G645N. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR038855(GSM458538)
D10. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786SRR040032(GSM532917)
G603N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040031(GSM532916)
G013T. (cervix)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR040039(GSM532924)
G531T. (cervix)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR040035(GSM532920)
G001T. (cervix)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
..........................................................................................................................................................................................GTCCTGGCTGGGACCTGGGC............................................ 2013.003.003.00---------------------------------------------------------------------------------------------------------
..................................................................................................................CGGAGCTGCCCGGCGGGA...................................................................................................................... 182.000.00--------------------------------1.00----------------1.00--------------------------------------------------------
...........................................................GGCGGGCGGAGGAGCCATC............................................................................................................................................................................ 191.000.00----------------------------------------------------------------------1.00-----------------------------------
......................................................................................................................................................................................................................................GACCTCTGACCCAAGTATC. 191.000.00--------------------------------------------------1.00-------------------------------------------------------
...........................................................................................................................................................................................CCCAGGTCCCAGCCAGGACG........................................... 201.000.001.00---------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................GCCCAGGTCCCAGCCAGAG............................................. 191.000.00----------1.00-----------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................ACCTCTGACCCAAGTTG.. 171.000.00------------------------1.00---------------------------------------------------------------------------------
.................................................................................................................................................................................................ACTTTGGTCCTGGCTGGGA...................................... 1911.001.00------------------1.00---------------------------------------------------------------------------------------
................................................................................................CCAGGGTGAGGCGGC........................................................................................................................................... 1540.500.50---------------------------------------------------------------------------------------------0.50------------
..............................................................CCTCCCCGCTCCTCCGCCC......................................................................................................................................................................... 1940.250.25----------------------------------------------------------------------------------------------------0.25-----
..............................................................CTCCCCGCTCCTCCGCCC.......................................................................................................................................................................... 1860.170.17--------------------------------------------------------------------------------------------------------0.17-
......................................................................................................................................................................................GGGACCTGGGCCGGC..................................................... 1570.140.14---------------------------------------------------------------------------------------------------------0.14