ID: uc002mwj.8
GENE: TRMT1(7)
chr19:13220766-13221021-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(10)
B-CELL 		(6)
BRAIN 		(5)
BREAST 		(31)
CELL-LINE 		(2)
HEART 		(4)
HELA 		(2)
OTHER 		(1)
RRP40.ip 		(8)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GTTTTTGTCCGTGTCTTCACCGGCCAGGCCAAGGTCAAGGCCTCAGCCAGGTCAGCCCGGGGGCAGAGAGCGGTGGTGGATTGAGAGAGGAGACAGGACCTTGCCCTGGGGGATCTGGGGCTTCTTAAGGGACAGAGCCAGTCTAAGGGAGGAGTTGGGGTGTCGTGGTCACGCTGGGAACTCGTGGCCACTGGTACCCCCCACAGCAAGCAGGCGCTGGTGTTCCAGTGTGTGGGCTGCGGGGCCTTCCACCTTC
......................................................................................................................((((((((...((((.......))))....))))))))((.(((.......))).)).................................................................................
...................................................................................................................116...........................................................178............................................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR038859(GSM458542)
MM386. (cell line)		SRR189786SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029124(GSM416753)
HeLa. (hela)		TAX577746(Rovira)
total RNA. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		TAX577590(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR037938(GSM510476)
293Red. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191522(GSM715632)
93genomic small RNA (size selected RNA from t. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
.........................................................................................................................................................GTTGGGGTGTCGTGGTCACGC..................................................................................21123.0023.002.00-7.00-1.00--3.001.00--1.00----2.00----2.00--------1.00---------------1.00---1.00------------------1.00--
......................................................................................................................................................................................................................CGCTGGTGTTCCAGTTG.........................1717.000.00-17.00----------------------------------------------------------------------
........................................................................................................................CTTCTTAAGGGACAGGCC......................................................................................................................1815.000.00-----2.002.00---4.00--1.00--------1.001.00--1.00-------------1.00-1.001.00----------------------------
........................................................................................................................CTTCTTAAGGGACAGGCCT.....................................................................................................................1915.000.00-----4.004.00------1.00--------1.00----1.00--------------------1.00----------1.001.001.00----------
........................................................................................................................................................AGTTGGGGTGTCGTGGTCACGC..................................................................................22112.0012.007.00---1.00--1.00-----------------1.00--1.00--------------------------1.00----------------
.........................................................................................................................................................GTTGGGGTGTCGTGGTCACG...................................................................................2018.008.00---3.004.00--------------------------------------------------------------1.00----
.........................................................................................................................................................GTTGGGGTGTCGTGGTCACGCT.................................................................................2216.006.00--3.001.00-----------2.00--------------------------------------------------------
...........................................................................................................................................................TGGGGTGTCGTGGTCACGCTGGG..............................................................................2314.004.004.00-----------------------------------------------------------------------
........................................................................................................................................................AGTTGGGGTGTCGTGGTCAC....................................................................................2014.004.001.00--------------1.00-----------------------------------1.00------1.00-------------
........................................................................................................................................................AGTTGGGGTGTCGTGGTCACGCAA................................................................................2414.0012.00-----------------2.00------2.00-----------------------------------------------
.........................................................................................................................................................GTTGGGGTGTCGTGGTCACGCAT................................................................................2313.0023.003.00-----------------------------------------------------------------------
..................................................................................................................................................................................AACTCGTGGCCACTGGTACCCCCCA.....................................................2513.003.00---3.00--------------------------------------------------------------------
........................................................................................................................................................AGTTGGGGTGTCGTGGTCACGA..................................................................................2213.003.00--------2.00---1.00-----------------------------------------------------------
........................................................................................................................................................AGTTGGGGTGTCGTGGTCACG...................................................................................2113.003.00-------1.00-----------1.00-------------------------1.00--------------------------
........................................................................................................................................................AGTTGGGGTGTCGTGGTCACGCA.................................................................................2313.0012.001.00----------2.00------------------------------------------------------------
..............................................................................GATTGAGAGAGGAGACACT...............................................................................................................................................................192.000.00---------2.00--------------------------------------------------------------
.......................................................................................................................................................................................GTGGCCACTGGTACCCCCCACA...................................................2212.002.00---------2.00--------------------------------------------------------------
...........................................................................................................................................................TGGGGTGTCGTGGTCACGC..................................................................................1912.002.002.00-----------------------------------------------------------------------
...........................................................................................................................................................TGGGGTGTCGTGGTCACGCTGGGA.............................................................................2412.002.00--------------------1.00---------------------------------1.00-----------------
............................................................................................................................................................................................................AGCAAGCAGGCGCTGGTGTT................................2012.002.00------------2.00-----------------------------------------------------------
........................................................................................................................CTTCTTAAGGGACAGGC.......................................................................................................................172.000.00---------------------------1.00-------------------------1.00------------------
..............................................................................................................................................CTAAGGGAGGAGTTGGGGTG..............................................................................................2012.002.00----2.00-------------------------------------------------------------------
........................................................................................................................................................AGTTGGGGTGTCGTGGTCACGCT.................................................................................2312.002.00--------------1.00--------------1.00------------------------------------------
..................................................................................................................................................................................AACTCGTGGCCACTGGTACCCCC.......................................................2311.001.00----------------------------------------------------1.00-------------------
.........................................................................................................................................................GTTGGGGTGTCGTGGTCAAGC..................................................................................2111.001.00--1.00---------------------------------------------------------------------
..........................................................................................................................................................TTGGGGTGTCGTGGTCACGCT.................................................................................2111.001.001.00-----------------------------------------------------------------------
.........................................................................................................................................................GTTGGGGTGTCGTGGTCACGCTT................................................................................2311.006.00-----------------------------------------------1.00------------------------
.....................................................................................................................................................................................TCGTGGCCACTGGTACCCCCCAT....................................................231.000.00-------------------------------------1.00----------------------------------
......................................................................................................................................................GGAGTTGGGGTGTCGTGGTA......................................................................................201.000.00-------------------1.00----------------------------------------------------
....................................................................AGCGGTGGTGGATTGACTG.........................................................................................................................................................................191.000.00--------------------------------------------1.00---------------------------
........................................................................................................................CTTCTTAAGGGACAGCCCT.....................................................................................................................191.000.00-----------------------------------------------------------------1.00------
........................................................................................................................................................................................TGGCCACTGGTACCCCCCACAGT.................................................231.000.00----------------------------------1.00-------------------------------------
........................................................................................................................................................AGTTGGGGTGTCGTGGTCCCGC..................................................................................221.000.00---------------------------------1.00--------------------------------------
.......................................................................................................................................................................................................................GCTGGTGTTCCAGTGTGTGGGCTGCGGG.............2811.001.00-------------------------1.00----------------------------------------------
.........................................................................................................................................................GTTGGGGTGTCGTGGTCA.....................................................................................1811.001.00----------------------------------------------------------------1.00-------
.......................................................................................................................................................GAGTTGGGGTGTCGTGGTCACG...................................................................................2211.001.00--------1.00---------------------------------------------------------------
...............................................................................................................................................TAAGGGAGGAGTTGGGGTTGTT...........................................................................................221.000.00--------------------------------------------------------------1.00---------
.............TCTTCACCGGCCAGGCCAA................................................................................................................................................................................................................................1911.001.00--------------------------------------------------------------------1.00---
..............................................................................................................................................................................................................CAAGCAGGCGCTGGTCA.................................171.000.00--------------------------1.00---------------------------------------------
...............................................................................................................................................................................GGGAACTCGTGGCCACTGGTACC..........................................................2311.001.00-----------------------------------1.00------------------------------------
..........................................................................................................................................................TTGGGGTGTCGTGGTCACGCTGG...............................................................................2311.001.00--------------------------------------1.00---------------------------------
.......................................................................................................................................................GAGTTGGGGTGTCGTGGTA......................................................................................191.000.00--------------------------------1.00---------------------------------------
..TTTTGTCCGTGTCTTCACCGGCCAGGC...................................................................................................................................................................................................................................2711.001.00-------1.00----------------------------------------------------------------
....................................................................AGCGGTGGTGGATTGTTTC.........................................................................................................................................................................191.000.00------------------------------------1.00-----------------------------------
.....................................................................GCGGTGGTGGATTGAATAG........................................................................................................................................................................191.000.00---1.00--------------------------------------------------------------------
.............................................................................................................................................................GGGTGTCGTGGTCACGCTGGGAACT..........................................................................2511.001.00--------------------1.00---------------------------------------------------
..........................................................................................................................................................TTGGGGTGTCGTGGTCACGCTGGA..............................................................................2411.001.00---------------------------------------------------------------1.00--------
........................................................................................................................CTTCTTAAGGGACAGTCCT.....................................................................................................................191.000.00------------------------------------------------------------------1.00-----
..........................................................................................................................................................TTGGGGTGTCGTGGTCACGCTGGGAACTCGTGGCCACTGGTACCCCCCA.....................................................4911.001.00-------------------------------------------------1.00----------------------
.......................................................CCCGGGGGCAGAGAGCGGTGGTGGCCCG.............................................................................................................................................................................281.000.00----------------------------------------------------------------------1.00-
........................................................................................................................................................AGTTGGGGTGTCGTGGTCACGT..................................................................................2211.003.00---1.00--------------------------------------------------------------------
........................................................................................................................CTTCTTAAGGGACAGGA.......................................................................................................................171.000.00------------------1.00-----------------------------------------------------
.........................................................................................................................................................GTTGGGGTGTCGTGGTCAC....................................................................................1911.001.001.00-----------------------------------------------------------------------
..........................................................................................................................................................TTGGGGTGTCGTGGTCACGC..................................................................................2011.001.001.00-----------------------------------------------------------------------
.........................................................................................................................................................GTTGGGGTGTCGTGGTCACGCAA................................................................................2311.0023.00-------------1.00----------------------------------------------------------
.....................................................................................................................................................................................................CCCCCACAGCAAGCAGGC.........................................1820.500.50----------------------------0.50-------------------------------------------
................................GGTCAAGGCCTCAGCCAG..............................................................................................................................................................................................................1830.330.33----------------0.33-------------------------------------------------------

Antisense strand
GTTTTTGTCCGTGTCTTCACCGGCCAGGCCAAGGTCAAGGCCTCAGCCAGGTCAGCCCGGGGGCAGAGAGCGGTGGTGGATTGAGAGAGGAGACAGGACCTTGCCCTGGGGGATCTGGGGCTTCTTAAGGGACAGAGCCAGTCTAAGGGAGGAGTTGGGGTGTCGTGGTCACGCTGGGAACTCGTGGCCACTGGTACCCCCCACAGCAAGCAGGCGCTGGTGTTCCAGTGTGTGGGCTGCGGGGCCTTCCACCTTC
......................................................................................................................((((((((...((((.......))))....))))))))((.(((.......))).)).................................................................................
...................................................................................................................116...........................................................178............................................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR038859(GSM458542)
MM386. (cell line)		SRR189786SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029124(GSM416753)
HeLa. (hela)		TAX577746(Rovira)
total RNA. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		TAX577590(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR037938(GSM510476)
293Red. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191522(GSM715632)
93genomic small RNA (size selected RNA from t. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
..................................................................................................................................................GGGAGGAGTTGGGGTGGTCT.......................................................................................... 201.000.00--------------------------------------------------------1.00---------------
..........................................TCAGCCAGGTCAGCCCAAGC.................................................................................................................................................................................................. 201.000.00---------------------------------------1.00--------------------------------
...................................................................................................................................................................................................................AGGCGCTGGTGTTCCAT............................ 171.000.00--------------1.00---------------------------------------------------------
...............................................CAGGTCAGCCCGGGGGCA............................................................................................................................................................................................... 181.000.00-----------------------1.00------------------------------------------------
......................................................................................................GCCCTGGGGGATCTGGT......................................................................................................................................... 171.000.00--------------1.00---------------------------------------------------------
...................................................................................................................................................................................................................AGGCGCTGGTGTTCCATTG.......................... 191.000.00-------------------------------1.00----------------------------------------
.....................................................................................................................................................................................................CCCCCACAGCAAGCAACC......................................... 181.000.00---------------------------------------------------------1.00--------------
........................................................CCGGGGGCAGAGAGCGA....................................................................................................................................................................................... 171.000.00-----------------------------------------1.00------------------------------
........................................................CCGGGGGCAGAGAGCGCGC..................................................................................................................................................................................... 191.000.00------------------1.00-----------------------------------------------------
...............................................................................................................................................................................................CTGTGGGGGGTACCA.................................................. 1520.500.50-----------------------------------------------------------------------0.50