ID: uc002muu.2_intron_1_0_chr19_12842236_r.3p
GENE: (1)
chr19:12842186-12842435-


(1)
AGO2.ip 		(5)
B-CELL 		(2)
BRAIN 		(6)
BREAST 		(10)
CELL-LINE 		(9)
CERVIX 		(3)
HEART 		(5)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(15)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GGAGGGCACCGCGGGCCCAGGGCAGGCGCTGAGTCGCGTGTGCTCCTCTCTGATTGCTGCGCAGGTCGGCCGGCTGGCGGAGCTGGGCGCGGCGTCAGGACGGGCCACCAGGCCGGGCTAGGAAGGTGTAGTGGGCCTCAGCGCCGCCAAGGGCGGTCCCGGCTCCTGTAACCGTTGCAGTCTTCTGTCCCTTCACCCAGGTGGGCAAACGCAGAGGCGGGAACAAACTAGCCCTCAAGACGGGAATAGT
.......................................................................((.(((.((.((.((((((((((.(((((((((((.((.((.((((((....((((.......)))).))).)))))...)).)).))))..)))))....)))))).))))...)).)).))).))....................................................
......................................................................71...............................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM532876(GSM532876)
G547T. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040028(GSM532913)
G026N. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189784SRR189785GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577580(Rovira)
total RNA. (breast)		GSM532880(GSM532880)
G659T. (cervix)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR040007(GSM532892)
G601T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR029131(GSM416760)
MCF7. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		GSM532886(GSM532886)
G850T. (cervix)
...........................................................................GGCGGAGCTGGGCGCCGC.............................................................................................................................................................18616.330.1714.67----------0.170.67------------------------------------0.33------0.170.170.17
.............................................................................................................................................................................................................................AACAAACTAGCCCTCAAGACGGG......2314.004.00-4.00---------------------------------------------------------
..................................................................................CTGGGCGCGGCGTCAGGACGGG..................................................................................................................................................2213.003.00------3.00----------------------------------------------------
...........................................................................GGCGGAGCTGGGCGCCG..............................................................................................................................................................1762.500.172.00-----------0.33------------------------------------0.17---------
..........................................................................TGGCGGAGCTGGGCGCGGCGTCAG........................................................................................................................................................2412.002.00---------2.00-------------------------------------------------
..................................................................................................................................................................................................................GCAGAGGCGGGAACAAACTA....................2012.002.00--1.00-------1.00------------------------------------------------
..................................................................................................................................................................................................................GCAGAGGCGGGAACAAACT.....................1912.002.00-----1.00-----------------------------1.00-----------------------
..........................................................................TGGCGGAGCTGGGCGTG...............................................................................................................................................................172.000.00-------2.00---------------------------------------------------
...........................................................................GGCGGAGCTGGGCGCCGA.............................................................................................................................................................1861.170.171.00-----------0.17----------------------------------------------
..........................................................................................................................................................................ACCGTTGCAGTCTTCTGTCCCTT.........................................................2311.001.00----------------------------------------1.00------------------
..................................................................................................................................................................................................................GCAGAGGCGGGAACAAACTAGC..................2211.001.00----------1.00------------------------------------------------
..............................................................................................................................................GCCGCCAAGGGCGGTCCCGGCTCCTG..................................................................................2611.001.00---1.00-------------------------------------------------------
..............................................................................................................................................................CCGGCTCCTGTAACCGTTGC........................................................................2011.001.00----------------------------------1.00------------------------
.................................................................................................................................................................................................................................AACTAGCCCTCAAGACCG.......181.000.00---------------------1.00-------------------------------------
..................................................................................................................................................................................................................................ACTAGCCCTCAAGACGG.......1711.001.00-------------1.00---------------------------------------------
........................................................................................................................................................................................................GTGGGCAAACGCAGAGGCGGGAAAA.........................251.000.00--1.00--------------------------------------------------------
...............................................................................................................................................................................................................AACGCAGAGGCGGGAACAAACTAGCCCT...............2811.001.00-------------------1.00---------------------------------------
....................................................................................................................................................................................................................AGAGGCGGGAACAAACTAG...................1911.001.00--------------------------1.00--------------------------------
.................................................................................................................CGGGCTAGGAAGGTGT.........................................................................................................................1611.001.00------------------------1.00----------------------------------
......................................................................................................GGCCACCAGGCCGGGCTAT.................................................................................................................................191.000.00-----------------------1.00-----------------------------------
...............................................................................................................................................................................................................AACGCAGAGGCGGGAACAAACTAGC..................2511.001.00---------------------------------------------1.00-------------
................................................................................................................................................................................................................ACGCAGAGGCGGGAACAAACT.....................2111.001.00-------------------------1.00---------------------------------
........................................................CTGCGCAGGTCGGCCGGCTG..............................................................................................................................................................................2011.001.00---------------------------------------1.00-------------------
.............................................................................................GTCAGGACGGGCCACAGGT..........................................................................................................................................191.000.00-------------------------------------1.00---------------------
.........................................................TGCGCAGGTCGGCCGGC................................................................................................................................................................................1711.001.00------------------------------------------1.00----------------
.....GCACCGCGGGCCCAGTGG...................................................................................................................................................................................................................................181.000.00-----------1.00-----------------------------------------------
..................................................................................CTGGGCGCGGCGTCAGGACGG...................................................................................................................................................2111.001.00------------------------------------1.00----------------------
.............................................................................................................................................................................................................CAAACGCAGAGGCGGGGA...........................181.000.00---------------------------1.00-------------------------------
...........................................................................GGCGGAGCTGGGCGCCTC.............................................................................................................................................................1861.000.171.00----------------------------------------------------------
..........................................................................TGGCGGAGCTGGGCGCCG..............................................................................................................................................................181.000.00-----------------------------1.00-----------------------------
..........................................................................TGGCGGAGCTGGGCGCCGC.............................................................................................................................................................191.000.00----1.00------------------------------------------------------
........................................................................GCTGGCGGAGCTGGGGTG................................................................................................................................................................181.000.00-----------------------------------------1.00-----------------
..........................................................GCGCAGGTCGGCCGGTCG..............................................................................................................................................................................181.000.00----1.00------------------------------------------------------
...................................................................................................................................................................................................................CAGAGGCGGGAACAAACTA....................1911.001.00--------------------1.00--------------------------------------
.......................................................................................................................................................................................................................GGCGGGAACAAACTAGCCCTCAAGACGGGA.....3011.001.00---1.00-------------------------------------------------------
........................................................................................................................................................................................................................GCGGGAACAAACTAGCCCTCAAGACGG.......2711.001.00---1.00-------------------------------------------------------
........................................................................................................CCACCAGGCCGGGCTAAGTC..............................................................................................................................201.000.00----------------------------------------------1.00------------
.........................................................................................................................................................................................................................CGGGAACAAACTAGCCCTCAAGACGGGAA....2911.001.00---------------------------------1.00-------------------------
......................................................................CGGCTGGCGGAGCTGTCT..................................................................................................................................................................181.000.00--------------1.00--------------------------------------------
...........................................................CGCAGGTCGGCCGGCTGG.............................................................................................................................................................................1811.001.00---------------1.00-------------------------------------------
..........................................................................................................................................................................................................GGGCAAACGCAGAGGCGGGAACAAACTAGC..................3011.001.00------------------1.00----------------------------------------
....................................................ATTGCTGCGCAGGTCGGCCGGCTGGCGGAT........................................................................................................................................................................301.000.00--------------------------------------1.00--------------------
................................................................................................................CCGGGCTAGGAAGGTGTAGTGGGC..................................................................................................................2411.001.00------------------------------1.00----------------------------
...............................................................................................................GCCGGGCTAGGAAGGTGTAA.......................................................................................................................201.000.00--------------------------------------------1.00--------------
..........................................................................TGGCGGAGCTGGGCGCCGTT............................................................................................................................................................201.000.00----------------1.00------------------------------------------
.....................................................................................................................................................................................................................GAGGCGGGAACAAACTAGCCCTCAAGACG........2911.001.00--1.00--------------------------------------------------------
....................................................................................................................................................................................................................AGAGGCGGGAACAAACTAGCCCTCAAGACGGGA.....3311.001.00-------------------------------------------1.00---------------
.................................................................TCGGCCGGCTGGCGGATGGT.....................................................................................................................................................................201.000.00--------1.00--------------------------------------------------
........................................................................................................................................................................................................GTGGGCAAACGCAGAGGCGGGA............................2211.001.00-----------------1.00-----------------------------------------
...........................................................................................................................................................................................................................GGAACAAACTAGCCCTCAAGACG........2311.001.00-------------------------------1.00---------------------------
...............................................................................................................GCCGGGCTAGGAAGGTGTAG.......................................................................................................................2011.001.00-----------------------------------------------1.00-----------
.....................................................................................................................................................................................................................GAGGCGGGAACAAACTAT...................181.000.00-----1.00-----------------------------------------------------
.........................................................................................................................................................................................................TGGGCAAACGCAGAGGCGGGAACA.........................2411.001.00--1.00--------------------------------------------------------
...........................................................................GGCGGAGCTGGGCGCAGC.............................................................................................................................................................1860.670.170.67----------------------------------------------------------
...........................................................................................................................................................GTCCCGGCTCCTGTA................................................................................1520.500.50------------------------------------------------0.50----------
...........CGGGCCCAGGGCAGGC...............................................................................................................................................................................................................................1650.400.40-----------------------------------------------------0.200.20----
...........................................................................GGCGGAGCTGGGCGCCGG.............................................................................................................................................................1860.330.170.33----------------------------------------------------------
........................................................................................................................................................................................................................................CCTCAAGACGGGAAT...1530.330.33--------------------------------------------------0.33--------
...........................................................................GGCGGAGCTGGGCGCCC..............................................................................................................................................................1760.170.170.17----------------------------------------------------------
...........................................................................GGCGGAGCTGGGCGCCCG.............................................................................................................................................................1860.170.170.17----------------------------------------------------------
...........................................................................GGCGGAGCTGGGCGCCCC.............................................................................................................................................................1860.170.170.17----------------------------------------------------------
...........................................................................GGCGGAGCTGGGCGCATC.............................................................................................................................................................1860.170.170.17----------------------------------------------------------
...........................................................................GGCGGAGCTGGGCGC................................................................................................................................................................1560.170.17-------------------------------------------------------0.17---
...........................................................................GGCGGAGCTGGGCGCTGC.............................................................................................................................................................1860.170.170.17----------------------------------------------------------
...........................................................................GGCGGAGCTGGGCGCTAC.............................................................................................................................................................1860.170.170.17----------------------------------------------------------
...........................................................................GGCGGAGCTGGGCGCCGCA............................................................................................................................................................1960.170.170.17----------------------------------------------------------
...........................................................................GGCGGAGCTGGGCGCTTC.............................................................................................................................................................1860.170.170.17----------------------------------------------------------

Antisense strand
GGAGGGCACCGCGGGCCCAGGGCAGGCGCTGAGTCGCGTGTGCTCCTCTCTGATTGCTGCGCAGGTCGGCCGGCTGGCGGAGCTGGGCGCGGCGTCAGGACGGGCCACCAGGCCGGGCTAGGAAGGTGTAGTGGGCCTCAGCGCCGCCAAGGGCGGTCCCGGCTCCTGTAACCGTTGCAGTCTTCTGTCCCTTCACCCAGGTGGGCAAACGCAGAGGCGGGAACAAACTAGCCCTCAAGACGGGAATAGT
.......................................................................((.(((.((.((.((((((((((.(((((((((((.((.((.((((((....((((.......)))).))).)))))...)).)).))))..)))))....)))))).))))...)).)).))).))....................................................
......................................................................71...............................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM532876(GSM532876)
G547T. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040028(GSM532913)
G026N. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189784SRR189785GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577580(Rovira)
total RNA. (breast)		GSM532880(GSM532880)
G659T. (cervix)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR040007(GSM532892)
G601T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR029131(GSM416760)
MCF7. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		GSM532886(GSM532886)
G850T. (cervix)
...................................................................................................................................................................TCCTGTAACCGTTGCATG..................................................................... 181.000.00-----1.00-----------------------------------------------------
..................................................................................................................................GCGGCGCTGAGGCCCAC....................................................................................................... 1711.001.00----------------------1.00------------------------------------
...............................................................................................................CTACACCTTCCTAGCCCGGC....................................................................................................................... 2011.001.00--------------------------------1.00--------------------------
...............................................................................................................................................CCGCCAAGGGCGGTCAAT......................................................................................... 181.000.00----------------------------1.00------------------------------
............................................................GCAGGTCGGCCGGCTTGT............................................................................................................................................................................ 181.000.00----1.00------------------------------------------------------
..........................................................................................................................................CGCCCTTGGCGGCGCTG............................................................................................... 1711.001.00--------1.00--------------------------------------------------
........................................................................................CCGTCCTGACGCCGC................................................................................................................................................... 1530.330.33---------------------------------------------------0.33-------
...................................................................................................................................................................................TGAAGGGACAGAAGAC....................................................... 1640.250.25----------------------------------------------------0.25------