ID: uc002mrx.1_intron_5_0_chr19_11577643_r.5p
GENE: ELAVL3(1)
chr19:11591215-11591464-


(4)
AGO2.ip
(1)
B-CELL
(7)
BREAST
(15)
CELL-LINE
(9)
CERVIX
(4)
HEART
(2)
LIVER
(1)
OTHER
(19)
SKIN

Sense strand
AGCCCCCCTCAACACGGACCGCGCCCGCCGGGCACACAAGAATGGTCACTGTAGGTATTCCCCTGTCGCCGAAAGGGAATCGGGACGGGGAGGAGTTGGGCCCAGGCTCCGCGGAGATTGGGCGGGTGCGGCGGGGGGGGTAGGACCAGGCCTAGCTAGGCCCGGGTTGGGGGGGTAGGACCAAGCCTCGGGGCCTGAGAGTGGGCAGGGCCGCGCCCAGAGTGCTGAGGGCGCTTAGAGCTTGGTCTGA
.................................................................((((((............(((........)))..((((((.(((....))).)))))).....))))))....................................................................................................................
................................................................65..............................................................................145.......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
GSM532876(GSM532876)
G547T. (cervix)
TAX577746(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532883(GSM532883)
G871N. (cervix)
SRR189783GSM532880(GSM532880)
G659T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040009(GSM532894)
G727T. (cervix)
SRR189785SRR040039(GSM532924)
G531T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040025(GSM532910)
G613T. (cervix)
GSM532884(GSM532884)
G871T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR040006(GSM532891)
G601N. (cervix)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR040043(GSM532928)
G428T. (cervix)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................CGAAAGGGAATCGGGTCAA..................................................................................................................................................................1914.002.004.00-------------------------------------------------------------
.....................................................................CGAAAGGGAATCGGGTC....................................................................................................................................................................1714.002.003.00-------------------------1.00-----------------------------------
.....................................................................CGAAAGGGAATCGGGTCA...................................................................................................................................................................1813.002.003.00-------------------------------------------------------------
....................................................................CCGAAAGGGAATCGG.......................................................................................................................................................................1513.003.00--------1.00---------------1.00---------------------------1.00---------
..........................................................................................................................CGGGTGCGGCGGGGGGGGG.............................................................................................................1912.001.00--1.00------------------------------------1.00----------------------
................................................................................................................................CGGCGGGGGGGGTAGGGG........................................................................................................1812.001.00---1.00------------------------------1.00---------------------------
..........................................................................................................................CGGGTGCGGCGGGGGCGGC.............................................................................................................192.000.00--------------------1.00---------1.00-------------------------------
.....................................................................CGAAAGGGAATCGGGTTA...................................................................................................................................................................1812.002.00-----1.00---------------------------------------1.00----------------
................................................................................................................................CGGCGGGGGGGGTAGGGTCG......................................................................................................2012.001.00-2.00------------------------------------------------------------
....................................................................CCGAAAGGGAATCGGGTCA...................................................................................................................................................................1912.001.001.00----------------------------------------1.00--------------------
.....................................................................CGAAAGGGAATCGGGTT....................................................................................................................................................................1712.002.00------------1.00-----------------------------1.00-------------------
.....................................................................CGAAAGGGAATCGGG......................................................................................................................................................................1512.002.00--------1.00----------------------------------------------1.00------
.....................................................................CGAAAGGGAATCGGGTTAA..................................................................................................................................................................1912.002.00--------------------------------------------1.00--------1.00--------
..........................................................................................................................CGGGTGCGGCGGGGGCGG..............................................................................................................182.000.00--1.00----------------------------------1.00------------------------
.................................................................................................................................GGCGGGGGGGGTAGGGTCG......................................................................................................192.000.00-1.00-------------------------------------------------------1.00----
............................................................................................................................GGTGCGGCGGGGGGGCGAG...........................................................................................................191.000.00------------------1.00-------------------------------------------
...............................................................................................................................GCGGCGGGGGGGGTAGGGTC.......................................................................................................201.000.00-1.00------------------------------------------------------------
................GACCGCGCCCGCCGGCG.........................................................................................................................................................................................................................171.000.00-----------1.00--------------------------------------------------
................................................................................................................................CGGCGGGGGGGGTAG...........................................................................................................1521.001.00---------0.50--------------------------------------------------0.50-
............................................................................................................................GGTGCGGCGGGGGGGCGCG...........................................................................................................191.000.00-----------------------------1.00--------------------------------
.................................................................................................................................GGCGGGGGGGGTAGGAT........................................................................................................171.000.00-----------------1.00--------------------------------------------
........................................................................................................................GGCGGGTGCGGCGGGGGCGGG.............................................................................................................211.000.00-------------------------1.00------------------------------------
................................CACACAAGAATGGTCACTGTAGGTATTCCCCTG.........................................................................................................................................................................................3311.001.00--------------1.00-----------------------------------------------
..........................................................................................................................CGGGTGCGGCGGGGGCG...............................................................................................................171.000.00----------------1.00---------------------------------------------
..........................................................................................................................CGGGTGCGGCGGGGGGGG..............................................................................................................1811.001.00--------------------------------------------------------1.00-----
.............................................................................................................................GTGCGGCGGGGGGGGGA............................................................................................................171.000.00-----------------------1.00--------------------------------------
.....................................................................CGAAAGGGAATCGGGTAAG..................................................................................................................................................................1911.002.00---------------------------------1.00----------------------------
....................................................................CCGAAAGGGAATCGGGTT....................................................................................................................................................................1811.001.00----------------------------1.00---------------------------------
........................................................................................................................GGCGGGTGCGGCGGGGGGG...............................................................................................................1911.001.00---------------------1.00----------------------------------------
.............................................................................................................................GTGCGGCGGGGGGGGCG............................................................................................................171.000.00-1.00------------------------------------------------------------
..................................................................................................................AGATTGGGCGGGTGCGGTGGC...................................................................................................................211.000.00-------1.00------------------------------------------------------
.................................................................................................................................GGCGGGGGGGGTAGGGG........................................................................................................171.000.00--------------------------------------1.00-----------------------
...........ACACGGACCGCGCCCGCCGGGCACACA....................................................................................................................................................................................................................2711.001.00------1.00-------------------------------------------------------
....................................................................CCGAAAGGGAATCGGGTTA...................................................................................................................................................................1911.001.00--------------------------------------------------1.00-----------
........................................................................................................GGCTCCGCGGAGATTTTG................................................................................................................................181.000.00-------------------------------1.00------------------------------
...................................................................................................................................................................GGGTTGGGGGGGTAGTGGC....................................................................191.000.00-----------------------------------1.00--------------------------
......................................................................................................................TGGGCGGGTGCGGCGGGGGC................................................................................................................201.000.00---------------------------1.00----------------------------------
..............................................................................................................................TGCGGCGGGGGGGGTAGGGGC.......................................................................................................211.000.00------1.00-------------------------------------------------------
..........................................................................GGGAATCGGGACGGGCGAC.............................................................................................................................................................191.000.001.00-------------------------------------------------------------
..............................................................................................................................................................................................................AGGGCCGCGCCCAGAGTGCTGAGG....................2411.001.00-------------------1.00------------------------------------------
..........................................................................................................................CGGGTGCGGCGGGGGCGGT.............................................................................................................191.000.00----------------------------------------------------------1.00---
....................................................................CCGAAAGGGAATCGGGT.....................................................................................................................................................................1711.001.00----1.00---------------------------------------------------------
.....................................................................CGAAAGGGAATCGGGT.....................................................................................................................................................................1611.002.00-----1.00--------------------------------------------------------
................................................................................................................................CGGCGGGGGGGGTAGATGC.......................................................................................................1921.001.00----------------------1.00---------------------------------------
.....................................................................CGAAAGGGAATCGGGTTC...................................................................................................................................................................1811.002.00----------------------------------------1.00---------------------
...............................................................................................................................GCGGCGGGGGGGGTAGGG.........................................................................................................181.000.00---------1.00----------------------------------------------------
..........................................................................................................................CGGGTGCGGCGGGGGGGGCGGT..........................................................................................................2211.001.00--------------------------------1.00-----------------------------
....................................................................................................................................................................................CCAAGCCTCGGGGCCTGAGA..................................................2011.001.00------------------------------------1.00-------------------------
................................................................................................................................CGGCGGGGGGGGTAGG..........................................................................................................1611.001.00---1.00----------------------------------------------------------
................................................................................................................................CGGCGGGGGGGGTAGGGTC.......................................................................................................1911.001.00-1.00------------------------------------------------------------
...............................................................................................................................................................GCCCGGGTTGGGGGGCGGG........................................................................191.000.00---------------1.00----------------------------------------------
....................................................................CCGAAAGGGAATCGGG......................................................................................................................................................................1611.001.00-----------------------------------------------1.00--------------
....................................................................CCGAAAGGGAATCGGGTTAA..................................................................................................................................................................2011.001.00-------------------------------------------1.00------------------
...............................................................................................................................GCGGCGGGGGGGGTAGGGGG.......................................................................................................201.000.00---1.00----------------------------------------------------------
...............................................................................................................................GCGGCGGGGGGGGTAG...........................................................................................................1620.500.50-----------------------------------------------------------0.50--
............................................................................................................................GGTGCGGCGGGGGGGG..............................................................................................................1640.250.25----------0.25---------------------------------------------------
............................................................................................................................GGTGCGGCGGGGGGGGGA............................................................................................................1840.250.25-----------0.25--------------------------------------------------
..................CCGCGCCCGCCGGGC.........................................................................................................................................................................................................................1560.170.17------------0.17-------------------------------------------------

Antisense strand
AGCCCCCCTCAACACGGACCGCGCCCGCCGGGCACACAAGAATGGTCACTGTAGGTATTCCCCTGTCGCCGAAAGGGAATCGGGACGGGGAGGAGTTGGGCCCAGGCTCCGCGGAGATTGGGCGGGTGCGGCGGGGGGGGTAGGACCAGGCCTAGCTAGGCCCGGGTTGGGGGGGTAGGACCAAGCCTCGGGGCCTGAGAGTGGGCAGGGCCGCGCCCAGAGTGCTGAGGGCGCTTAGAGCTTGGTCTGA
.................................................................((((((............(((........)))..((((((.(((....))).)))))).....))))))....................................................................................................................
................................................................65..............................................................................145.......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
GSM532876(GSM532876)
G547T. (cervix)
TAX577746(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532883(GSM532883)
G871N. (cervix)
SRR189783GSM532880(GSM532880)
G659T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040009(GSM532894)
G727T. (cervix)
SRR189785SRR040039(GSM532924)
G531T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040025(GSM532910)
G613T. (cervix)
GSM532884(GSM532884)
G871T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR040006(GSM532891)
G601N. (cervix)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR040043(GSM532928)
G428T. (cervix)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................CGCCGAAAGGGAATCGCAC..................................................................................................................................................................... 191.000.00-------------------------------------------------1.00------------
....................GCGCCCGCCGGGCACCGGC................................................................................................................................................................................................................... 191.000.00----1.00---------------------------------------------------------
..................CCGCGCCCGCCGGGCGCG...................................................................................................................................................................................................................... 1861.000.00--1.00-----------------------------------------------------------
....................GCGCCCGCCGGGCACCG..................................................................................................................................................................................................................... 171.000.00-------------1.00------------------------------------------------
.................ACCGCGCCCGCCGGGACAC...................................................................................................................................................................................................................... 191.000.00----------1.00---------------------------------------------------
............................................................CCCTGTCGCCGAAAGTGC............................................................................................................................................................................ 181.000.00------------------------------------------------1.00-------------
.......................................................................................................AGGCTCCGCGGAGATCGGT................................................................................................................................ 191.000.00----------------------------------------------1.00---------------
...........................................AATACCTACAGTGACC............................................................................................................................................................................................... 1611.001.00-------1.00------------------------------------------------------
.................................................................................................................................GGCGGGGGGGGTAGGCCG....................................................................................................... 181.000.00---------------------------------------------------1.00----------
................GACCGCGCCCGCCGGGG......................................................................................................................................................................................................................... 171.000.00------------------------------------------------------1.00-------
.......................................................................................................................CCCGCCGCACCCGCCC................................................................................................................... 1670.140.14-------------0.14------------------------------------------------
..........................................................................................CTGGGCCCAACTCCT................................................................................................................................................. 1580.120.12-------------------------------------------------------------0.12