uc002mpr.2_intron_0_0_chr19_10812380

TGGGTTGCCGCATCTGCCTGGGCAATACCTACCATCTGGGTCTAAGGCCGGTGGGTGGGCTCTGCCCGCGCGGGGAGGCGGCGAGGCGGCGAGGCGTGGGGAGCCATGGAGCGTCCTCCAGGCCCGGACACTCCTCCCAAAGTCAATCGACCAGCTGTATTGAGCGCCCCCAATGACCAGGCCTTGTACTGGGCGTGAAAGAGCAGCAGGGACTAAAGCTGGCCAGATCTGTCTCCCAAGAAGGGCCCCCAGGGACGCGGTCACCCCTAACCTGACACTTTCTTCCATCAACCCAGGGACCCGAGCTGATCCAGAAAGCCAACGGTCTCCACGGCTTCATGAATTG
...................................................((.((((((...)))))).)).....(((((.....((.((((.(((.((.(((.(((((....))))))))))...))).))))))...(((....)))..)))))............................................................................................................................................................................................
..................................................51.............................................................................................................162......................................................................................................................................................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR207116(GSM721078)
Nuclear RNA. (cell line)

SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR189784

SRR189783

DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)

SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)

SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)

SRR207110(GSM721072)
Nuclear RNA. (cell line)

SRR037938(GSM510476)
293Red. (cell line)

SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)

SRR343334

SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)

GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR037935(GSM510473)
293cand3. (cell line)

SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR040037(GSM532922)
G243T. (cervix)

SRR189787

SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)

SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)

DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)

SRR037937(GSM510475)
293cand2. (cell line)

SRR189785

SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR040008(GSM532893)
G727N. (cervix)

TAX577741(Rovira)
total RNA. (breast)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR040025(GSM532910)
G613T. (cervix)

SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)

SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)

SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)

TAX577738(Rovira)
total RNA. (breast)

SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)

SRR038852(GSM458535)
QF1160MB. (cell line)

SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)

SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR038862(GSM458545)
MM472. (cell line)

SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)

......................................................GTGGGCTCTGCCCGCGCAGGT...............................................................................................................................................................................................................................................................................

16.00

0.00

7.00

1.00

......................................................GTGGGCTCTGCCCGCG....................................................................................................................................................................................................................................................................................

12.00

8.00

1.00

0.50

1.00

0.50

.......................................................TGGGCTCTGCCCGCGCAGGT...............................................................................................................................................................................................................................................................................

9.00

0.00

2.00

1.00

..............................ACCATCTGGGTCTAAGGCCGG.......................................................................................................................................................................................................................................................................................................

4.00

......................................................GTGGGCTCTGCCCGCGCAG.................................................................................................................................................................................................................................................................................

3.00

0.00

3.00

.................................................................................................................................................ATCGACCAGCTGTATTG........................................................................................................................................................................................

2.00

.......................................................TGGGCTCTGCCCGCGCAG.................................................................................................................................................................................................................................................................................

2.00

0.00

2.00

.......................................................TGGGCTCTGCCCGCGCAGGG...............................................................................................................................................................................................................................................................................

1.00

0.00

1.00

.........................TACCTACCATCTGGGTCTAAGGCCGGGACC...................................................................................................................................................................................................................................................................................................

1.00

0.00

1.00

.............................................................................................................................................................................................TGGGCGTGAAAGAGCAGCA..........................................................................................................................................

1.00

....................................................................................................................................................................................................GAAAGAGCAGCAGGGACTAA..................................................................................................................................

1.00

................................................................................................................................................................................................................GGGACTAAAGCTGGCCAGATCTGTCTCC..............................................................................................................

1.00

.......................................................................................................................................................................................................................................................................................................................................TCCACGGCTTCATGAATTG

1.00

..............................................................................CGGCGAGGCGGCGAGACCC.........................................................................................................................................................................................................................................................

1.00

0.00

1.00

......................................................GTGGGCTCTGCCCGCGCAGGC...............................................................................................................................................................................................................................................................................

1.00

0.00

1.00

.................................................................................................................................................................................................CGTGAAAGAGCAGCAGGGACTAAAGCTG.............................................................................................................................

1.00

.............................................................................................................................................................................................TGGGCGTGAAAGAGCAGCAGT........................................................................................................................................

1.00

0.00

1.00

..........................................................................................................................................................................................................................................................................................TTCCATCAACCCAGGCTCG.............................................

1.00

0.00

1.00

...................................................................................................................................................................................................................................................................................................................................GGTCTCCACGGCTTCA.......

1.00

...........................................................................................................................................................................................................CAGCAGGGACTAAAGCTG.............................................................................................................................

1.00

.......................................................................................................................................................CAGCTGTATTGAGCGCCCCCAATGAC.........................................................................................................................................................................

1.00

................................................................................................................................................................................................................................................................................TGACACTTTCTTCCATCAACCCAG..................................................

1.00

.............................................................................................................................................................................................................................................................................................CATCAACCCAGGGACGC............................................

1.00

0.00

1.00

......................................................GTGGGCTCTGCCCGCGCGGGCTCG............................................................................................................................................................................................................................................................................

1.00

0.00

1.00

......................................................GTGGGCTCTGCCCGC.....................................................................................................................................................................................................................................................................................

1.00

.......................................................TGGGCTCTGCCCGCGAGAG................................................................................................................................................................................................................................................................................

1.00

0.00

1.00

........................................................................................................................................................................................TGTACTGGGCGTGAAAGAGCAGCATGGA......................................................................................................................................

1.00

0.00

1.00

........................ATACCTACCATCTGGGTCTAAGGCCG........................................................................................................................................................................................................................................................................................................

1.00

...........................................AAGGCCGGTGGGTGGTGTT............................................................................................................................................................................................................................................................................................

1.00

0.00

1.00

.......................................................TGGGCTCTGCCCGCGAGGG................................................................................................................................................................................................................................................................................

1.00

0.00

1.00

.......................................................TGGGCTCTGCCCGCGCTGGT...............................................................................................................................................................................................................................................................................

1.00

0.00

1.00

........................................................................................................................................................................................................................................................................................................GGACCCGAGCTGATCCAGAAAGC...........................

1.00

............................................................................................................................................................................................................AGCAGGGACTAAAGCTGG............................................................................................................................

0.50

......................................................GTGGGCTCTGCCCGCGAGA.................................................................................................................................................................................................................................................................................

0.50

12.00

0.50

..................................TCTGGGTCTAAGGCC.........................................................................................................................................................................................................................................................................................................

0.25

......................................................................CGGGGAGGCGGCGAGG....................................................................................................................................................................................................................................................................

0.20

TGGGTTGCCGCATCTGCCTGGGCAATACCTACCATCTGGGTCTAAGGCCGGTGGGTGGGCTCTGCCCGCGCGGGGAGGCGGCGAGGCGGCGAGGCGTGGGGAGCCATGGAGCGTCCTCCAGGCCCGGACACTCCTCCCAAAGTCAATCGACCAGCTGTATTGAGCGCCCCCAATGACCAGGCCTTGTACTGGGCGTGAAAGAGCAGCAGGGACTAAAGCTGGCCAGATCTGTCTCCCAAGAAGGGCCCCCAGGGACGCGGTCACCCCTAACCTGACACTTTCTTCCATCAACCCAGGGACCCGAGCTGATCCAGAAAGCCAACGGTCTCCACGGCTTCATGAATTG ...................................................((.((((((...)))))).)).....(((((.....((.((((.(((.((.(((.(((((....))))))))))...))).))))))...(((....)))..)))))............................................................................................................................................................................................ ..................................................51.............................................................................................................162......................................................................................................................................................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR207116(GSM721078) Nuclear RNA. (cell line)	SRR330893(SRX091731) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR189784	SRR189783	DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela)	SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line)	SRR330894(SRX091732) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR330874(SRX091712) tissue: skin psoriatic involveddisease state:. (skin)	SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex)	SRR207110(GSM721072) Nuclear RNA. (cell line)	SRR037938(GSM510476) 293Red. (cell line)	SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart)	SRR343334	SRR039621(GSM531984) HBV(+) HCC Tissue Sample 2. (liver)	GSM450606(GSM450606) miRNA sequencing raw reads from post-mortem s. (brain)	SRR037935(GSM510473) 293cand3. (cell line)	SRR330892(SRX091730) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR040037(GSM532922) G243T. (cervix)	SRR189787	SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood)	SRR330863(SRX091701) tissue: skin psoriatic involveddisease state:. (skin)	DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line)	SRR330898(SRX091736) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line)	SRR037937(GSM510475) 293cand2. (cell line)	SRR189785	SRR330897(SRX091735) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR040008(GSM532893) G727N. (cervix)	TAX577741(Rovira) total RNA. (breast)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR040025(GSM532910) G613T. (cervix)	SRR330896(SRX091734) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR039635(GSM518472) THP1_nuc_sRNAs. (cell line)	SRR330868(SRX091706) tissue: skin psoriatic involveddisease state:. (skin)	SRR330902(SRX091740) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver)	TAX577738(Rovira) total RNA. (breast)	SRR342897(SRX096793) small RNA seq of Left atrial tissue. (heart)	SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR342896(SRX096792) small RNA seq of Right atrial tissue. (heart)	SRR038852(GSM458535) QF1160MB. (cell line)	SRR330880(SRX091718) tissue: skin psoriatic involveddisease state:. (skin)	SRR330901(SRX091739) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR038862(GSM458545) MM472. (cell line)	SRR330884(SRX091722) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR330920(SRX091758) tissue: normal skindisease state: normal. (skin)
...........................CCGGCCTTAGACCCAGATGGTAGG.......................................................................................................................................................................................................................................................................................................	24	1	4.00	4.00	4.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................................................................GAGACAGATCTGGCCAGCTT...............................................................................................................	20	1	2.00	2.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
...............................................GCAGAGCCCACCCACCGG.........................................................................................................................................................................................................................................................................................	18	1	2.00	2.00	-	-	-	-	-	-	-	-	-	-	-	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.................................................................................................................................................................................................................................GATCTGTCTCCCAAGACC.......................................................................................................	18		2.00	0.00	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
...............................ACCGGCCTTAGACCCAGATGG......................................................................................................................................................................................................................................................................................................	21	1	2.00	2.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
................................CATCTGGGTCTAAGGCCGGTTCT...................................................................................................................................................................................................................................................................................................	23		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................................................................................TGAAAGAGCAGCAGGTATT....................................................................................................................................	19		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.................................................................................................................AGGAGTGTCCGGGCCTGGAGGA...................................................................................................................................................................................................................	22	1	1.00	1.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
....................................................................................GGCGGCGAGGCGTGGGGG....................................................................................................................................................................................................................................................	18		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................CCGGGCCTGGAGGACGCTCCA...........................................................................................................................................................................................................................	21	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................GCGGCGAGGCGTGGGGGCGC.................................................................................................................................................................................................................................................	20		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.................................................................................................................GAGGAGTGTCCGGGCCTGGAGGA..................................................................................................................................................................................................................	23	1	1.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
...........ATCTGCCTGGGCAATCTCC............................................................................................................................................................................................................................................................................................................................	19		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
....................................................................................................................................................................................................................................................................................ACTTTCTTCCATCAACT.....................................................	17		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
...............................................................................................................CGTCCTCCAGGCCCGGA..........................................................................................................................................................................................................................	17		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.................................................................................................................TCCTCCAGGCCCGGAGGT.......................................................................................................................................................................................................................	18		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.................................................................................................................GAGTGTCCGGGCCTGGAGGA.....................................................................................................................................................................................................................	20	1	1.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
....................................................................TCGCCGCCTCCCCGCG......................................................................................................................................................................................................................................................................	16	2	0.50	0.50	-	-	-	-	-	-	-	-	0.50	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
....................................................................................................................................................................................................................................................CGCGTCCCTGGGGGC.......................................................................................	15	4	0.25	0.25	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.25	-