ID: uc002moq.1_intron_4_0_chr19_10610757_r.5p
GENE: KEAP1(1)
chr19:10613173-10613422-


(14)
B-CELL 		(1)
BRAIN 		(12)
BREAST 		(33)
CELL-LINE 		(7)
CERVIX 		(5)
HEART 		(3)
HELA 		(8)
LIVER 		(2)
OTHER 		(24)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GCGCCGGGGCTCGGGCGGTGGAGGCGGAGCCGGAGCGCGGCCATGGCGGGGTGAGTGAGGCGGGATGTGCCCGGGCTGCGGGCATCGCGGGCCGCGAGCGCCCCTGCGGCCGTGCCCGGAGACCAGGAAAACGGGCGCCACGGCCCAGGGCGCCTCCGAGTTCCCCGCCAGGACTCGGAGGGCCAGGAGGGCGCGACCTGGGTGGATATTTTTGTTGGACGGCGCAACTCTTGGGGTGGCCCGGGAGCGG
....................................................................((((((((((.((((.(((((...)))))..))))..(((.((((.((.((...)).))...)))).)))..)))))).))))...................................................................................................
.......................................................56..............................................................................................152................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		TAX577740(Rovira)
total RNA. (breast)		SRR037931(GSM510469)
293GFP. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR040030(GSM532915)
G013N. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR191457(GSM715567)
27genomic small RNA (size selected RNA from t. (breast)		SRR189783SRR343336SRR040016(GSM532901)
G645N. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		TAX577741(Rovira)
total RNA. (breast)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR343335SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		GSM541796(GSM541796)
undifferentiated human embryonic stem cells. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM532886(GSM532886)
G850T. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR343337SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040015(GSM532900)
G623T. (cervix)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
............................................................CGGGATGTGCCCGGGCTG............................................................................................................................................................................1817.007.00-1.00----------------------1.00----------1.00-------------------------1.00------------------------------1.00--1.00--------1.00-----------
...........................................TGGCGGGGTGAGTGAGGC.............................................................................................................................................................................................1816.006.00---------2.00-2.00-----------------------------------------------1.00----1.00---------------------------------------------------
......................................................................CCGGGCTGCGGGCATCGC..................................................................................................................................................................1816.006.00-1.00----------------1.00----------2.00-1.00-----------1.00------------------------------------------------------------------------
.......................................................................CGGGCTGCGGGCATCGCG.................................................................................................................................................................1815.005.00------1.00-------1.00-------------------------------------1.00-1.00--------------------------------------1.00----------------------
................................................................ATGTGCCCGGGCTGCGGG........................................................................................................................................................................1815.005.00----------1.00----------2.00------1.00-------1.00-------------------------------------------------------------------------------
.................GTGGAGGCGGAGCCGGAG.......................................................................................................................................................................................................................1815.005.00-3.00----------------------1.00---------------------1.00---------------------------------------------------------------------
.........................................................AGGCGGGATGTGCCCGGGCTG............................................................................................................................................................................2115.005.00------2.00------------1.00--------------------------------------1.00------------------------------------------------1.00--------
.......................................GCCATGGCGGGGTGAGTGAG...............................................................................................................................................................................................2014.004.00---------------------------2.00---1.00-----1.00------------------------------------------------------------------------------
...............................................GGGGTGAGTGAGGCGGGATG.......................................................................................................................................................................................2014.004.00-----3.00---------------------------------1.00----------------------------------------------------------------------------
.................GTGGAGGCGGAGCCGGAGCG.....................................................................................................................................................................................................................2014.004.00-2.00---1.00---------------------------------------------------------------------1.00----------------------------------------
.........CTCGGGCGGTGGAGGCGGAG.............................................................................................................................................................................................................................2014.004.00----4.00---------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGAGGCGGGATGT......................................................................................................................................................................................1813.003.00-------------------2.00-------------1.00----------------------------------------------------------------------------------
............................................................CGGGATGTGCCCGGGCTGCGG.........................................................................................................................................................................2113.003.00--2.00---------------------------------------------------------------------------------1.00-------------------------------
...................................................................................................................................CGGGCGCCACGGCCCGG......................................................................................................173.000.00-------2.00--------------------------------------------------------------------------------------------------1.00---------
..............................................CGGGGTGAGTGAGGCGGGAT........................................................................................................................................................................................2013.003.00----2.00--------------------------------------------------------------------------------------------------1.00------------
...............................................GGGGTGAGTGAGGCGGGATGT......................................................................................................................................................................................2113.003.00--3.00-----------------------------------------------------------------------------------------------------------------
..............................................................GGATGTGCCCGGGCTGCGGG........................................................................................................................................................................2013.003.00---3.00----------------------------------------------------------------------------------------------------------------
............................................................CGGGATGTGCCCGGGCTGCGGG........................................................................................................................................................................2213.003.00-------------------------1.00----1.00-----------------------------------------------------------1.00-------------------------
....................................................................GCCCGGGCTGCGGGCATCGCGGG...............................................................................................................................................................2312.002.00--------------------------1.00--------------1.00--------------------------------------------------------------------------
...........................................................GCGGGATGTGCCCGGGC..............................................................................................................................................................................1712.002.00------------1.00--1.00----------------------------------------------------------------------------------------------------
......................GGCGGAGCCGGAGCGGTCT.................................................................................................................................................................................................................192.000.00--------------------------------------------------------------------------------1.00-------------1.00---------------------
...........CGGGCGGTGGAGGCGGAGCCG..........................................................................................................................................................................................................................2112.002.00--------------------------------1.00--------------------------------------------------------------------1.00--------------
...................................................................................ATCGCGGGCCGCGAGCGC.....................................................................................................................................................1812.002.00------------2.00-------------------------------------------------------------------------------------------------------
.....................................................................CCCGGGCTGCGGGCATCGCG.................................................................................................................................................................2012.002.00------1.00----------1.00--------------------------------------------------------------------------------------------------
...............................................................GATGTGCCCGGGCTGCGGG........................................................................................................................................................................1912.002.00-------------2.00------------------------------------------------------------------------------------------------------
...............................................................................................................................AAAACGGGCGCCACGGCCCAGG.....................................................................................................2212.002.00-------------2.00------------------------------------------------------------------------------------------------------
..............GCGGTGGAGGCGGAGCCGGAGCG.....................................................................................................................................................................................................................2312.002.00-----------------------2.00--------------------------------------------------------------------------------------------
..............................................CGGGGTGAGTGAGGCGGGATG.......................................................................................................................................................................................2112.002.00-----------------1.00------------------------------1.00-------------------------------------------------------------------
.............................................................GGGATGTGCCCGGGCTGCGGG........................................................................................................................................................................2112.002.00--2.00-----------------------------------------------------------------------------------------------------------------
...............................................................................................................GTGCCCGGAGACCAGGAAAACGG....................................................................................................................2312.002.00---------2.00----------------------------------------------------------------------------------------------------------
...........................................TGGCGGGGTGAGTGAGGCGGGATGT......................................................................................................................................................................................2512.002.00-------1.00------------------------------1.00-----------------------------------------------------------------------------
............................................................CGGGATGTGCCCGGGCTGCG..........................................................................................................................................................................2012.002.00--------------------1.00-----------------------------------------------------------------------------1.00-----------------
.........................................CATGGCGGGGTGAGTGAGGC.............................................................................................................................................................................................2012.002.00----------1.001.00--------------------------------------------------------------------------------------------------------
................GGTGGAGGCGGAGCCGGAGCG.....................................................................................................................................................................................................................2112.002.00--------------------------------1.00---------------------------------------1.00-------------------------------------------
....................................GCGGCCATGGCGGGGTGAGTGA................................................................................................................................................................................................2212.002.00--------2.00-----------------------------------------------------------------------------------------------------------
.......................GCGGAGCCGGAGCGCGGCCAT..............................................................................................................................................................................................................2112.002.00--------------------1.00------------------------------------------------------------------------------1.00----------------
.................................................................................................GCGCCCCTGCGGCCGTGCCCGGAGGC...............................................................................................................................262.000.00---------------------1.00--------------1.00-------------------------------------------------------------------------------
...............CGGTGGAGGCGGAGCCGGAGC......................................................................................................................................................................................................................2112.002.00------------------------------1.00-------------------1.00-----------------------------------------------------------------
..............................................................................................................................................................................................................TATTTTTGTTGGACGGC...........................1711.001.00------------------1.00-------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................GGCGCGACCTGGGTGGATATTTTTGTTGGA...............................3011.001.00--------------------------1.00-----------------------------------------------------------------------------------------
......................................................................................................CCTGCGGCCGTGCCCGGAGACCAGGAAA........................................................................................................................2811.001.00----------------------------------------1.00---------------------------------------------------------------------------
..............................CGGAGCGCGGCCATGGCGGGGTA.....................................................................................................................................................................................................231.000.00---------------------------------------1.00----------------------------------------------------------------------------
.........................................................................................................................................................................................................GTGGATATTTTTGTTGGACGGC...........................2211.001.00----------------------1.00---------------------------------------------------------------------------------------------
.......................GCGGAGCCGGAGCGCGGCCATGGC...........................................................................................................................................................................................................2411.001.00---------1.00----------------------------------------------------------------------------------------------------------
.......................................................TGAGGCGGGATGTGCCTAA................................................................................................................................................................................191.000.00--------------------------------------------------------------1.00-----------------------------------------------------
....................GAGGCGGAGCCGGAGCG.....................................................................................................................................................................................................................1721.001.00----------------------------------------------------------------------------------------------------------------0.500.50--
............................................................................................................................................................................ACTCGGAGGGCCAGGAGGGCG.........................................................2111.001.00----------------------1.00---------------------------------------------------------------------------------------------
.....................................CGGCCATGGCGGGGTGAGTGAGGCGG...........................................................................................................................................................................................2611.001.00-------------------------------------------------1.00------------------------------------------------------------------
.........................GGAGCCGGAGCGCGGGGCC..............................................................................................................................................................................................................191.000.00------------------------------------------------------------------------------------------------------1.00-------------
..........................................................................................................................................................................................................................ACGGCGCAACTCTTGGGG..............1811.001.00------------------1.00-------------------------------------------------------------------------------------------------
..................TGGAGGCGGAGCCGGAGCG.....................................................................................................................................................................................................................1911.001.00-------------------------------------------------------------------1.00------------------------------------------------
................................GAGCGCGGCCATGGCGGGG.......................................................................................................................................................................................................1921.001.00--------------------------------------------1.00-----------------------------------------------------------------------
......................................................................................................................................................................GCCAGGACTCGGAGGGCC..................................................................1811.001.00------------1.00-------------------------------------------------------------------------------------------------------
......................................................................................GCGGGCCGCGAGCGCCG...................................................................................................................................................171.000.00----------------------------------------------------------------------1.00---------------------------------------------
..........................................ATGGCGGGGTGAGTGAGGCGGGT.........................................................................................................................................................................................231.000.00-------------------------------------------------------------------------------------------1.00------------------------
...................GGAGGCGGAGCCGGAGCGCG...................................................................................................................................................................................................................2011.001.00--------------------------------------------------------------------1.00-----------------------------------------------
............................................GGCGGGGTGAGTGAGGCG............................................................................................................................................................................................1811.001.00--------------1.00-----------------------------------------------------------------------------------------------------
.........CTCGGGCGGTGGAGGCGGAGC............................................................................................................................................................................................................................2111.001.00---------------------------------------------------------------------------------------1.00----------------------------
............................................................CGGGATGTGCCCGGGCTGC...........................................................................................................................................................................1911.001.00-----------------------------------------1.00--------------------------------------------------------------------------
....................................................................GCCCGGGCTGCGGGCATCCG..................................................................................................................................................................201.000.00-----------------1.00--------------------------------------------------------------------------------------------------
...........................................TGGCGGGGTGAGTGAGGCG............................................................................................................................................................................................1911.001.00-----------------------------------------------------1.00--------------------------------------------------------------
...........................................................................................................................CAGGAAAACGGGCGCCACGGCCCAG......................................................................................................2511.001.00----------------------------------1.00---------------------------------------------------------------------------------
............................GCCGGAGCGCGGCCATGGCGGGGT......................................................................................................................................................................................................2411.001.00--------1.00-----------------------------------------------------------------------------------------------------------
................................................................................................AGCGCCCCTGCGGCCGTGC.......................................................................................................................................1911.001.00-------------------------------------------1.00------------------------------------------------------------------------
...........................................................GCGGGATGTGCCCGGGCTGCG..........................................................................................................................................................................2111.001.00---------------------------------------------------------1.00----------------------------------------------------------
..............GCGGTGGAGGCGGAGCCGGAGC......................................................................................................................................................................................................................2211.001.00------------------------------------------------------------------------------------------------------------1.00-------
..............................................CGGGGTGAGTGAGGCGGG..........................................................................................................................................................................................1811.001.00-----------------------------------------------------------------------------------------1.00--------------------------
.....................................................................CCCGGGCTGCGGGCATCGCGGGC..............................................................................................................................................................2311.001.00----------------1.00---------------------------------------------------------------------------------------------------
.......................................................................CGGGCTGCGGGCATCGCGGGCC.............................................................................................................................................................2211.001.00---------------------------------1.00----------------------------------------------------------------------------------
...............................................GGGGTGAGTGAGGCGGGAT........................................................................................................................................................................................1911.001.00--------------------------------------------------------------------------------------------------------------1.00-----
........................CGGAGCCGGAGCGCGGCCAT..............................................................................................................................................................................................................2011.001.00--------------------------------------------------------------------------------------1.00-----------------------------
..........................................................................................................................................CACGGCCCAGGGCGCCAAGC............................................................................................201.000.00---1.00----------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................GCCAGGACTCGGAGGGAAAA................................................................201.000.00---------------------------------------------------1.00----------------------------------------------------------------
....................................................................................................................................................................................................CCTGGGTGGATATTTTTGTTGGACGGC...........................2711.001.00--------1.00-----------------------------------------------------------------------------------------------------------
..........................................ATGGCGGGGTGAGTGAGGC.............................................................................................................................................................................................1911.001.00-----------------1.00--------------------------------------------------------------------------------------------------
...........................................................................................................................................ACGGCCCAGGGCGCCTCCGAAA.........................................................................................221.000.00------------------------------------------------------------------------------1.00-------------------------------------
....................................................................GCCCGGGCTGCGGGCATCGCGGGCCG............................................................................................................................................................2611.001.00---------------1.00----------------------------------------------------------------------------------------------------
....CGGGGCTCGGGCGGTGGAGGCGGAG.............................................................................................................................................................................................................................2511.001.00----------1.00---------------------------------------------------------------------------------------------------------
..................................................GTGAGTGAGGCGGGATGTG.....................................................................................................................................................................................1911.001.00------------------------------------------------------------------1.00-------------------------------------------------
.............................................................GGGATGTGCCCGGGCTGCG..........................................................................................................................................................................1911.001.00----------------------------------------------------------------------------------1.00---------------------------------
.........................................................AGGCGGGATGTGCCCGGGC..............................................................................................................................................................................1911.001.00---------------1.00----------------------------------------------------------------------------------------------------
..................TGGAGGCGGAGCCGGAGCGCGGC.................................................................................................................................................................................................................2311.001.00-----------------------------------------------------------------1.00--------------------------------------------------
............................................GGCGGGGTGAGTGAGGAG............................................................................................................................................................................................181.000.00------------------------------------------------------------1.00-------------------------------------------------------
.....................................................................CCCGGGCTGCGGGCATCGC..................................................................................................................................................................1911.001.00------1.00-------------------------------------------------------------------------------------------------------------
..............................................................................CGGGCATCGCGGGCCGC...........................................................................................................................................................1711.001.00-----------------------------------1.00--------------------------------------------------------------------------------
.................................................GGTGAGTGAGGCGGGATGTG.....................................................................................................................................................................................2011.001.00-1.00------------------------------------------------------------------------------------------------------------------
...................................................................................................................................CGGGCGCCACGGCCCCGG.....................................................................................................181.000.00---------------------------------------------1.00----------------------------------------------------------------------
.......................................................................CGGGCTGCGGGCATCGCGGGA..............................................................................................................................................................211.000.00----------------------------------------------1.00---------------------------------------------------------------------
.....................................................................................................................................................................CGCCAGGACTCGGAGGGCC..................................................................1911.001.00--------------------------------------1.00-----------------------------------------------------------------------------
......................................................................CCGGGCTGCGGGCATCGCGGG...............................................................................................................................................................2111.001.00-------------------------------------------------------------------------------------------------1.00------------------
.......................................................................CGGGCTGCGGGCATCGCGG................................................................................................................................................................1911.001.00--------------1.00-----------------------------------------------------------------------------------------------------
.......................GCGGAGCCGGAGCGCGGCCATGGCGG.........................................................................................................................................................................................................2611.001.00-----------------------------------------------------------------------------------1.00--------------------------------
........................................................GAGGCGGGATGTGCCCGGGCTG............................................................................................................................................................................2211.001.00-----------------------------------------------1.00--------------------------------------------------------------------
..........................................................................................GCCGCGAGCGCCCCTGCGGC............................................................................................................................................2011.001.00----------------------------1.00---------------------------------------------------------------------------------------
...........................................................GCGGGATGTGCCCGGG...............................................................................................................................................................................1611.001.00---------------1.00----------------------------------------------------------------------------------------------------
..............................................CGGGGTGAGTGAGGCGGGATTT......................................................................................................................................................................................2211.003.00-------------------------------------------------------1.00------------------------------------------------------------
....................................................GAGTGAGGCGGGATGTAATA..................................................................................................................................................................................201.000.00--------------------------------------------------------------------------1.00-----------------------------------------
...................................................................................................................................................................CCCGCCAGGACTCGGAGGGCC..................................................................2111.001.00-----1.00--------------------------------------------------------------------------------------------------------------
.....................................................AGTGAGGCGGGATGTGCC...................................................................................................................................................................................1811.001.00------------------------------------------------------------------------------------------------1.00-------------------
...........................................................GCGGGATGTGCCCGGGCTG............................................................................................................................................................................1911.001.00-1.00------------------------------------------------------------------------------------------------------------------
................................................................ATGTGCCCGGGCTGCG..........................................................................................................................................................................1611.001.00----------------------------------1.00---------------------------------------------------------------------------------
.................GTGGAGGCGGAGCCGGAGCGC....................................................................................................................................................................................................................2111.001.00----------1.00---------------------------------------------------------------------------------------------------------
.......................................GCCATGGCGGGGTGAGTG.................................................................................................................................................................................................1811.001.00-------------------------------------1.00------------------------------------------------------------------------------
.............................................................GGGATGTGCCCGGGCTG............................................................................................................................................................................1711.001.00---------------------------------------------------------------------------------1.00----------------------------------
...............................................................................GGGCATCGCGGGCCGCGAGC.......................................................................................................................................................2011.001.00---------------------------------------------------------------------1.00----------------------------------------------
..........................GAGCCGGAGCGCGGCCATGGCGGGGTGAG...................................................................................................................................................................................................2911.001.00-----------------------------------------------------------------------------1.00--------------------------------------
....................GAGGCGGAGCCGGAGCGCGG..................................................................................................................................................................................................................2011.001.00--------------1.00-----------------------------------------------------------------------------------------------------
.......................................................................CGGGCTGCGGGCATCGC..................................................................................................................................................................1711.001.00----------------1.00---------------------------------------------------------------------------------------------------
..............................................CGGGGTGAGTGAGGCGGGA.........................................................................................................................................................................................1911.001.00----------------------------------------------------------------------------------------1.00---------------------------
...................................................TGAGTGAGGCGGGATGTG.....................................................................................................................................................................................1811.001.00-------------------------------------------------------------------------------------------------------------1.00------
..GCCGGGGCTCGGGCGGTGGAGGCGGA..............................................................................................................................................................................................................................2611.001.00-----------------------------------------------------------------------1.00--------------------------------------------
................................GAGCGCGGCCATGGCGCGG.......................................................................................................................................................................................................191.000.00--------------------------------------------1.00-----------------------------------------------------------------------
.....GGGGCTCGGGCGGTGGAGGCGGAG.............................................................................................................................................................................................................................2411.001.00-------1.00------------------------------------------------------------------------------------------------------------
...........................................TGGCGGGGTGAGTGAGGCGGGATG.......................................................................................................................................................................................2411.001.00--------------------------------------------------------1.00-----------------------------------------------------------
...............CGGTGGAGGCGGAGCCGG.........................................................................................................................................................................................................................1811.001.00-1.00------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GAGGGCCAGGAGGGCGCGAC.....................................................2011.001.00-------1.00------------------------------------------------------------------------------------------------------------
..............................................CGGGGTGAGTGAGGCGGGT.........................................................................................................................................................................................1911.001.00-------------------------------------------------------------------------1.00------------------------------------------
..........................................................................................................................................................................................................TGGATATTTTTGTTGGACGGCGCA........................2411.001.00------------------------------------------1.00-------------------------------------------------------------------------
.....................................................................CCCGGGCTGCGGGCATCGCGG................................................................................................................................................................2111.001.00----------------------1.00---------------------------------------------------------------------------------------------
...................GGAGGCGGAGCCGGAGC......................................................................................................................................................................................................................1711.001.00----------------------------------------------------------------------------------------------------1.00---------------
..GCCGGGGCTCGGGCGGT.......................................................................................................................................................................................................................................1711.001.00---1.00----------------------------------------------------------------------------------------------------------------
.........................................CATGGCGGGGTGAGTGAGGCGGGATGTGC....................................................................................................................................................................................2911.001.00---------------------------------------------1.00----------------------------------------------------------------------
..................................................GTGAGTGAGGCGGGATGTGCC...................................................................................................................................................................................2111.001.00--------------------1.00-----------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................TGGATATTTTTGTTGGACGGGGCA........................241.000.00------------------------------------------1.00-------------------------------------------------------------------------
.......................................GCCATGGCGGGGTGAGTGAGGC.............................................................................................................................................................................................2211.001.00-----------1.00--------------------------------------------------------------------------------------------------------
.....................................................AGTGAGGCGGGATGTGCCCGGG...............................................................................................................................................................................2211.001.00-------------------------------------------------------------------------------1.00------------------------------------
................................................GGGTGAGTGAGGCGGGA.........................................................................................................................................................................................1720.500.50----------0.50---------------------------------------------------------------------------------------------------------
..................TGGAGGCGGAGCCGGA........................................................................................................................................................................................................................1620.500.50-----------0.50--------------------------------------------------------------------------------------------------------
....................GAGGCGGAGCCGGAGCGAA...................................................................................................................................................................................................................1920.501.00-------------------0.50------------------------------------------------------------------------------------------------
............GGGCGGTGGAGGCGGA..............................................................................................................................................................................................................................1620.500.50---------------------------------------------------------------------------------------------------------------0.50----
.................................AGCGCGGCCATGGCGGGG.......................................................................................................................................................................................................1820.500.50------------------------------------------------0.50-------------------------------------------------------------------
.........................................................................................................................................CCACGGCCCAGGGCG..................................................................................................1560.330.33-----------------------0.33--------------------------------------------------------------------------------------------
................................................................ATGTGCCCGGGCTGC...........................................................................................................................................................................1530.330.33-------------------------------------------------------------------------------------------------------------------0.33
...................GGAGGCGGAGCCGGA........................................................................................................................................................................................................................1550.200.20------------------------------------------------------------------------------------------------------------------0.20-
...................................CGCGGCCATGGCGGG........................................................................................................................................................................................................1570.140.14------------------------------------------------------------------------------------------------------------------0.14-

Antisense strand
GCGCCGGGGCTCGGGCGGTGGAGGCGGAGCCGGAGCGCGGCCATGGCGGGGTGAGTGAGGCGGGATGTGCCCGGGCTGCGGGCATCGCGGGCCGCGAGCGCCCCTGCGGCCGTGCCCGGAGACCAGGAAAACGGGCGCCACGGCCCAGGGCGCCTCCGAGTTCCCCGCCAGGACTCGGAGGGCCAGGAGGGCGCGACCTGGGTGGATATTTTTGTTGGACGGCGCAACTCTTGGGGTGGCCCGGGAGCGG
....................................................................((((((((((.((((.(((((...)))))..))))..(((.((((.((.((...)).))...)))).)))..)))))).))))...................................................................................................
.......................................................56..............................................................................................152................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		TAX577740(Rovira)
total RNA. (breast)		SRR037931(GSM510469)
293GFP. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR040030(GSM532915)
G013N. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR191457(GSM715567)
27genomic small RNA (size selected RNA from t. (breast)		SRR189783SRR343336SRR040016(GSM532901)
G645N. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		TAX577741(Rovira)
total RNA. (breast)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR343335SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		GSM541796(GSM541796)
undifferentiated human embryonic stem cells. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM532886(GSM532886)
G850T. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR343337SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040015(GSM532900)
G623T. (cervix)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
................................................................................................................................................................TTCCCCGCCAGGACTGCC........................................................................ 184.000.003.00------------------------------------------------------------------------------------1.00------------------------------
................................................................................................................................................................TTCCCCGCCAGGACTGCCA....................................................................... 194.000.002.00---------------------------------------1.00-----------------------------------1.00---------------------------------------
................................................................................................................................................................TTCCCCGCCAGGACTGC......................................................................... 173.000.001.00--------------------------------------------------------------1.00-----------------------------------------1.00----------
................................................................................................................................................................TTCCCCGCCAGGACTCGGC....................................................................... 191.000.001.00-------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................CTCGGAGGCGCCCTGGGCC.......................................................................................... 1911.001.00----------------1.00---------------------------------------------------------------------------------------------------
................................................................................................................................................................TTCCCCGCCAGGACTCGCCA...................................................................... 201.000.00--------1.00-----------------------------------------------------------------------------------------------------------
.....................................................................CCCGCGATGCCCGCAGCCCGGG............................................................................................................................................................... 2211.001.00---1.00----------------------------------------------------------------------------------------------------------------
................................................................................................................................................................TTCCCCGCCAGGACTGCCC....................................................................... 191.000.001.00-------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................CGGGCCACCCCAAGAGTTGCG....... 2111.001.00--1.00-----------------------------------------------------------------------------------------------------------------
................................................................................................................................................................TTCCCCGCCAGGACTCGC........................................................................ 181.000.001.00-------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................GAGTTCCCCGCCAGGTG............................................................................ 171.000.00-------------------------1.00------------------------------------------------------------------------------------------
....................................................................................................................................................................................GGCCAGGAGGGCGCGGGT.................................................... 181.000.00-----------------------------------------------1.00--------------------------------------------------------------------
........................................................................................................................................CTCGGAGGCGCCCTGGGCCGTGGC.......................................................................................... 2411.001.00------------------1.00-------------------------------------------------------------------------------------------------
.........................................................................................................................................CCACGGCCCAGGGCGCCTCCGAAA......................................................................................... 241.000.00----------------1.00---------------------------------------------------------------------------------------------------
................................................................................................................................................................TTCCCCGCCAGGACTCGGCC...................................................................... 201.000.001.00-------------------------------------------------------------------------------------------------------------------