ID: uc002moc.3_intron_8_0_chr19_10468595_r
GENE: (16)
chr19:10468545-10468728-


(1)
AGO2.ip
(4)
B-CELL
(2)
BRAIN
(8)
BREAST
(21)
CELL-LINE
(6)
LIVER
(2)
OTHER
(1)
RRP40.ip
(22)
SKIN

Sense strand
CATCAAGCTGAGTGATCCTGGCGTGGGCCTGGGCGCCCTCTCCAGGGAGGGTGAGTACCTGAGGGGACCTGGGCACAGTGGGGGGCTTCCCCTGCTCCTTTCACCCTTGGTGACCTCTGACCTTGGCCTCCCAGAGCGGGTGGAGAGGATCCCCTGGCTGGCCCCCGAATGCCTACCAGGTGGG
..........................................................(((.((((.((.(((((.((..((((....))))..))....(((((...)))))....)).))).)))))).)))..................................................
........................................................57...........................................................................134................................................
SizePerfect hitTotal NormPerfect NormSRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
TAX577580(Rovira)
total RNA. (breast)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................................................................ACCTCTGACCTTGGCCTCCCAGA.................................................23120.0020.00-2.00----1.001.001.00---1.001.00-2.00-1.00--------1.00---1.001.001.001.00--1.00-------1.00-------1.00-------1.00-1.00--
................................................................................................................ACCTCTGACCTTGGCCTCCCAG..................................................22111.0011.001.001.003.00-----------------1.00----1.00-----------1.00--1.00------1.00-----------1.00-----
................................................................................................................ACCTCTGACCTTGGCCTCCCAGAA................................................24110.0020.00--------------2.00-1.00---------------------1.00--1.001.001.00-----1.001.00------------1.00-
................................................................................................................ACCTCTGACCTTGGCCTCCC....................................................2015.005.004.00---------------------1.00------------------------------------------
......................................TCTCCAGGGAGGGTGACGGC..............................................................................................................................204.000.00---1.00--------------1.001.00-------------------------------1.00-------------
.......................................CTCCAGGGAGGGTGACGGC..............................................................................................................................193.000.00---1.00-----1.00--1.00----------------------------------------------------
...............................................................................................................................CTCCCAGAGCGGGTGTCAG......................................193.000.00----2.00--1.00---------------------------------------------------------
................................................................................................................ACCTCTGACCTTGGCCTCCCAGAAA...............................................2512.0020.00---------------------1.00--------------------------1.00----------------
.......................................................................................................................ACCTTGGCCTCCCAGAGCGGTGGG.........................................242.000.00-----------1.00----------------------------------1.00------------------
................................................................................................................ACCTCTGACCTTGGCCTCCCAGAAAA..............................................2612.0020.00--------1.00-1.00------------------------------------------------------
...............................................................................................................GACCTCTGACCTTGGCCTCCCAGA.................................................2412.002.00------------------------1.00---1.00------------------------------------
................................................................................................................ACCTCTGACCTTGGCCTCC.....................................................1912.002.00-----2.00-----------------------------------------------------------
..TCAAGCTGAGTGATCCTGGCGTGGGCCCG.........................................................................................................................................................291.000.00-----------1.00-----------------------------------------------------
.............................................................AGGGGACCTGGGCACATTC........................................................................................................191.000.00-------------------------------------------------------1.00---------
................................................................................................................ACCTCTGACCTTGGCCTCCCAGAACA..............................................2611.0020.00-----------------------1.00-----------------------------------------
.......................................................................GGCACAGTGGGGGGCTTCTGC............................................................................................211.000.00-----------------------------------------------------1.00-----------
.....................CGTGGGCCTGGGCGCC...................................................................................................................................................1611.001.00----------------------------------1.00------------------------------
....AAGCTGAGTGATCCTGGC..................................................................................................................................................................1811.001.00----------1.00------------------------------------------------------
..................................................GTGAGTACCTGAGGGGACCTGGGCA.............................................................................................................2511.001.00---------------------------------------1.00-------------------------
..TCAAGCTGAGTGATCCTG....................................................................................................................................................................1811.001.00-----------------------------------1.00-----------------------------
................................................................................................................ACCTCTGACCTTGGCCTCCCAGAAT...............................................2511.0020.00---------------------------------------------------------1.00-------
................................................................................................................ACCTCTGACCTTGGCCTCCCAGAAAC..............................................2611.0020.00-------------1.00---------------------------------------------------
..............................................................................................................TGACCTCTGACCTTGGCCTCCCAGA.................................................2511.001.00------1.00----------------------------------------------------------
...............................................................................................................................CTCCCAGAGCGGGTGTC........................................171.000.00----------------------------------------------------------1.00------
...CAAGCTGAGTGATCCTGGCGTGGGCCTG.........................................................................................................................................................2811.001.00-------------------------------------------------------------1.00---
....................................CCTCTCCAGGGAGGGTGACGGT..............................................................................................................................221.000.00-----------------------------1.00-----------------------------------
................................................................................................................ACCTCTGACCTTGGCCTCCCATA.................................................231.000.00---------------------------1.00-------------------------------------
...............................................................................................................GACCTCTGACCTTGGCCTCCCAGAA................................................2511.002.00--------------------------------------------------------1.00--------
.........................................................................................................CTTGGTGACCTCTGACCTTGGCCTCCCAGA.................................................3011.001.00---------1.00-------------------------------------------------------
............................................................................................TGCTCCTTTCACCCTTGGTGACCT....................................................................2411.001.00------------------------------------------------------1.00----------
...............................................................................................................................CTCCCAGAGCGGGTGTCA.......................................181.000.00----------------1.00------------------------------------------------
..................................................................................................................CTCTGACCTTGGCCTCCCAGA.................................................2120.500.50----------------------------------------------------------------0.50

Antisense strand
CATCAAGCTGAGTGATCCTGGCGTGGGCCTGGGCGCCCTCTCCAGGGAGGGTGAGTACCTGAGGGGACCTGGGCACAGTGGGGGGCTTCCCCTGCTCCTTTCACCCTTGGTGACCTCTGACCTTGGCCTCCCAGAGCGGGTGGAGAGGATCCCCTGGCTGGCCCCCGAATGCCTACCAGGTGGG
..........................................................(((.((((.((.(((((.((..((((....))))..))....(((((...)))))....)).))).)))))).)))..................................................
........................................................57...........................................................................134................................................
SizePerfect hitTotal NormPerfect NormSRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
TAX577580(Rovira)
total RNA. (breast)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................................GCGGGTGGAGAGGATCT................................ 171.000.00---------------------------------------------1.00-------------------