ID: uc002mki.1_intron_10_0_chr19_8654876_r.5p
GENE: ADAMTS10(2)
chr19:8656484-8656733-


(2)
AGO1.ip
(1)
AGO2.ip
(1)
B-CELL
(1)
BRAIN
(2)
BREAST
(22)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(2)
HEART
(1)
HELA
(2)
LIVER
(2)
OTHER
(4)
SKIN

Sense strand
GCAAGTACTGTCTGGGTGAGAGAAGGCGGCACCGCTCCTGCAACACGGATGTGAGTTCCCCCAAACCCCTTGAGGGGTGGGGGGAGGAAGCATTAAAAACAGCTATCAGAGGCCGGGCACCGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCAAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATAGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGG
...................................................................((((((.((.((....................)).)).))).)))........(((((.((.(((((((..((((((....)))))).......))))))))))))))...........................................................................
...................................................................68..........................................................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040036(GSM532921)
G243N. (cervix)
GSM956925PAZD5SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR038861(GSM458544)
MM466. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038852(GSM458535)
QF1160MB. (cell line)
............................................................................................................................................................................ACGAGGTCAGGAGATCGAGACCATCCGGCC................................................305.000.00-5.00---------------------------------------
.....................................................................................................................................................TGGGAGGCCAAGGCAGGCGGGGC..............................................................................235.000.004.001.00---------------------------------------
....................................................................................................................................................TTGGGAGGCCAAGGCAGGCGGGGC..............................................................................242.000.002.00----------------------------------------
........................................................................AGGGGTGGGGGGAGGCTCT...............................................................................................................................................................192.000.00--1.00--------------1.00-----------------------
.................................................................................................................................................ACTTTGGGAGGCCAAGGCAGGCGGGGC..............................................................................272.000.001.001.00---------------------------------------
.........................................................................................................................................................................................ATCGAGACCATCCTGGCTAACATCGCG......................................272.000.002.00----------------------------------------
...............................................................................................................................................ACACTTTGGGAGGCCAAGGCAGGCGGGGC..............................................................................291.000.001.00----------------------------------------
.................................................................................................................................................ACTTTGGGAGGCCAAGGCAGGCGGAACGC............................................................................291.000.00-1.00---------------------------------------
.......................................................................GAGGGGTGGGGGGAGGCAA................................................................................................................................................................191.000.00------1.00----------------------------------
.......CTGTCTGGGTGAGAGAAGGCG..............................................................................................................................................................................................................................2111.001.00-------1.00---------------------------------
.................................................................................................................................................ACTTTGGGAGGCCAAGGCAGGCGGGAC..............................................................................271.000.001.00----------------------------------------
...............................................................................................................................................................................AGGTCAGGAGATCGAGACCATCCGGCA................................................271.000.00-1.00---------------------------------------
...............................................................................................................................................ACACTTTGGGAGGCCAAGGCAGGCGGATGTAT...........................................................................321.000.001.00----------------------------------------
............................................................................................................................................................CCAAGGCAGGCGGATCACG...........................................................................1901.001.00------------------------1.00----------------
................................................................................................................................................CACTTTGGGAGGCCAAGGCAGGCGGGGC..............................................................................281.000.001.00----------------------------------------
................................................................................................................................................CACTTTGGGAGGCCAAGGCAGGCGGAA...............................................................................271.000.00---------1.00-------------------------------
................................................................................GGGGAGGAAGCATTAATGCT......................................................................................................................................................201.000.00-----------------------1.00-----------------
............................................................................................................................................................................ACGAGGTCAGGAGATCGAGACCATCCGGCG................................................301.000.00-1.00---------------------------------------
............................................................................................................................................................................ACGAGGTCAGGAGATCGAGACCCGGC....................................................261.000.00-1.00---------------------------------------
.....................................................................................................................................................TGGGAGGCCAAGGCAGGCGGGCCC.............................................................................241.000.001.00----------------------------------------
...............................................................................................................................................................................AGGTCAGGAGATCGAGACCATCCGAC.................................................261.000.001.00----------------------------------------
....................................................................................................................................................................................AGGAGATCGAGACCATCCTGGCTCTTT...........................................271.000.00----------------------------1.00------------
..................................................................................................................................................................CAGGCGGATCACGAGGTCAGGAGCCCG.............................................................271.000.00-1.00---------------------------------------
......................................................................................................................................................................................GAGATCGAGACCATCCGCC.................................................191.000.00--------------------1.00--------------------
...AGTACTGTCTGGGTGAGA.....................................................................................................................................................................................................................................1811.001.00---------------------------------1.00-------
...........................................................................................................................................................................................CGAGACCATCCTGGCTAACATAAAA......................................251.000.00--1.00--------------------------------------
.................................................................................................................................................ACTTTGGGAGGCCAAGGCAGGCGGGGCA.............................................................................281.000.001.00----------------------------------------
..........................................................................................................................................................................................TCGAGACCATCCTGGCTAACATAAC.......................................251.000.00----1.00------------------------------------
..................................................................................................................................................................................TCAGGAGATCGAGACCATCCGACC................................................241.000.001.00----------------------------------------
.......................................................................................................................................................................................AGATCGAGACCATCCTGCCCC..............................................211.000.001.00----------------------------------------
..AAGTACTGTCTGGGTGAGAGAAGGC...............................................................................................................................................................................................................................2511.001.00-------1.00---------------------------------
.................................................................................................................................................ACTTTGGGAGGCCAAGGCAGGCGGGG...............................................................................261.000.001.00----------------------------------------
.............................................................................................................................................................................CGAGGTCAGGAGATCGAGACCATCCGGCA................................................291.000.00-1.00---------------------------------------
.......................................................................GAGGGGTGGGGGGAGGCTCT...............................................................................................................................................................201.000.00----1.00------------------------------------
......................................................................................................................................................................CGGATCACGAGGTCAGGAGATCGAGACA........................................................281.000.00----------------------1.00------------------
...............................................................................................................................................ACACTTTGGGAGGCCAAGGCAGGCGGACCA.............................................................................301.000.00-1.00---------------------------------------
...................................................................................................................................................................................CAGGAGATCGAGACCATCCTGC.................................................221.000.00---------1.00-------------------------------
........................................................................AGGGGTGGGGGGAGGCGAG...............................................................................................................................................................191.000.00-------------------------1.00---------------
.................................................................................................................................................ACTTTGGGAGGCCAAGGCAGGCGGAAGCG............................................................................291.000.001.00----------------------------------------
............................................................................................................................................................................................................ACATAGTGAAACCCCGTCTCCTCC......................241.000.001.00----------------------------------------
........................................................................AGGGGTGGGGGGAGGATTAA..............................................................................................................................................................201.000.00------1.00----------------------------------
..............................................................................................................................................................................................................ATAGTGAAACCCCGTCTCGGCT......................221.000.00--1.00--------------------------------------
........................................................................AGGGGTGGGGGGAGGCTC................................................................................................................................................................181.000.00--1.00--------------------------------------
..........................................................................................................................................................................TCACGAGGTCAGGAGATCGAGACCCAGG....................................................281.000.001.00----------------------------------------
...............................................................................................................................................ACACTTTGGGAGGCCAAGGCAGGC...................................................................................2401.001.00-----1.00-----------------------------------
...............................................................................................................................................................................AGGTCAGGAGATCGAGACCATCCGGT.................................................261.000.00-1.00---------------------------------------
............................................................................................................................................................................ACGAGGTCAGGAGATCGAGACCATCCGGTT................................................301.000.00-1.00---------------------------------------
...............................................................................................................................................................................AGGTCAGGAGATCGAGACCATCCGC..................................................251.000.001.00----------------------------------------
.............................................................................................................AGGCCGGGCACCGTGGCTCACACCC....................................................................................................................251.000.001.00----------------------------------------
....................................................................................................................................................................................AGGAGATCGAGACCATCCTGGCTCTG............................................261.000.00-----------1.00-----------------------------
.................................................................................................................................................ACTTTGGGAGGCCAAGGCAGGCGGGGG..............................................................................271.000.001.00----------------------------------------
.....................................................................................................................................................................................GGAGATCGAGACCATCCTGCCTA..............................................231.000.00--------------------------------1.00--------
..AAGTACTGTCTGGGTGAGAG....................................................................................................................................................................................................................................2011.001.00----------------1.00------------------------
..................................................................................................................................................CTTTGGGAGGCCAAGGCAGGCGGGGG..............................................................................261.000.001.00----------------------------------------
....................................................................................................................................................................................AGGAGATCGAGACCATCCGGTG................................................221.000.001.00----------------------------------------
........................................................................AGGGGTGGGGGGAGGCTAT...............................................................................................................................................................191.000.00----------------------------------------1.00
....................................................................................................................................................................................AGGAGATCGAGACCATCCTGGCTAC.............................................251.000.00------------1.00----------------------------
...............................................................................................................GCCGGGCACCGTGGCTCACTTT.....................................................................................................................221.000.00------------------------------1.00----------

Antisense strand
GCAAGTACTGTCTGGGTGAGAGAAGGCGGCACCGCTCCTGCAACACGGATGTGAGTTCCCCCAAACCCCTTGAGGGGTGGGGGGAGGAAGCATTAAAAACAGCTATCAGAGGCCGGGCACCGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCAAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATAGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGG
...................................................................((((((.((.((....................)).)).))).)))........(((((.((.(((((((..((((((....)))))).......))))))))))))))...........................................................................
...................................................................68..........................................................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040036(GSM532921)
G243N. (cervix)
GSM956925PAZD5SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR038861(GSM458544)
MM466. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038852(GSM458535)
QF1160MB. (cell line)
.............................................................................................................................CTCACGCCTGTAATCCCAACAAA...................................................................................................... 233.000.00--------------------------1.00-------1.00----1.00-
................................................................................................................................................................................................................AGTGAAACCCCGTCTCTACTAAAAACACC............. 292.000.002.00----------------------------------------
.............................................................................................................................CTCACGCCTGTAATCCCAACAA....................................................................................................... 222.000.00-------------------1.00---------1.00-----------
....................................................................................................................GCACCGTGGCTCACGCCTGTTCCT.............................................................................................................. 242.000.00-2.00---------------------------------------
.................................................................................................................................CGCCTGTAATCCCAACACTTTAGA................................................................................................. 241.000.00--------1.00--------------------------------
.CAAGTACTGTCTGGGG......................................................................................................................................................................................................................................... 161.000.00-------------1.00---------------------------
..........................................................................................................................................................................................TCGAGACCATCCTGGCTAACCCT......................................... 231.000.00-1.00---------------------------------------
.................................................................................................................................CGCCTGTAATCCCAACACTTTGGATA............................................................................................... 261.000.00---1.00-------------------------------------
..................................................................................................................................................................................................................TGAAACCCCGTCTCTACTAGCTC................. 231.000.001.00----------------------------------------
.................................................................................................................................CGCCTGTAATCCCAACACTTAAC.................................................................................................. 231.000.00--------------------------------------1.00--
............................................................................................................................................................CCAAGGCAGGCGGATCAAAA.......................................................................... 201.000.00-------------------------------1.00---------
.................................................................................................................................CGCCTGTAATCCCAACAAGCT.................................................................................................... 211.000.001.00----------------------------------------
...................................................................................................................GGCACCGTGGCTCACGCCTGTGGAC.............................................................................................................. 251.000.00-1.00---------------------------------------
.................................................................................................................................CGCCTGTAATCCCAAACCC...................................................................................................... 191.000.00-1.00---------------------------------------
..............................................................................................................................................................................................................ATAGTGAAACCCCGTCTCTACTCCTC.................. 261.000.001.00----------------------------------------
.....................................................................................................................................................................................GGAGATCGAGACCATCCTGGCTAACATCACC...................................... 311.000.001.00----------------------------------------
....................................................................................................................................................................................................................AAACCCCGTCTCTACTAAAAATACAGTAG......... 291.000.00---------------1.00-------------------------
................................................................................................................CCGGGCACCGTGGCTCACGCCTGTACTC.............................................................................................................. 281.000.00-1.00---------------------------------------
.............................................................................................................................CTCACGCCTGTAATCCCAACAA....................................................................................................... 221.000.00--------------1.00--------------------------
............................................................................................................................................................................ACGAGGTCAGGAGATCGAGATAG....................................................... 231.000.00-------------------------------------1.00---
....................................................................................................................................................................................................................AAACCCCGTCTCTACTAAAAATGCCG............ 261.000.00-1.00---------------------------------------
................................................................................................................................................................................................................AGTGAAACCCCGTCTCTACTCGTG.................. 241.000.00-1.00---------------------------------------
......................................................................................................................................................................................................GGGTTTCACTATGTTAGCCA................................ 2001.001.00-----1.00-----------------------------------
......................................................................................................................ACCGTGGCTCACGCCTGTCAGG.............................................................................................................. 221.000.001.00----------------------------------------
............................................................................................................................................................................................CACTATGTTAGCCAGGATGGTCTC...................................... 2401.001.00----------1.00------------------------------
................................................................................................................................................................................................................AGTGAAACCCCGTCTCTACTAAAATTGC.............. 281.000.001.00----------------------------------------
.................................................................................................................................CGCCTGTAATCCCAACACTTTGA.................................................................................................. 231.000.00--------1.00--------------------------------
................................................................................................................................................................................................CCATCCTGGCTAACATGCC....................................... 191.000.001.00----------------------------------------
...............................................................................................................................CACGCCTGTAATCCCAACATGTG.................................................................................................... 231.000.00---1.00-------------------------------------
..................................................................................................................................................................................................................TGAAACCCCGTCTCTACGCA.................... 201.000.00------------------1.00----------------------
....................................................................................................................................................................................AGGAGATCGAGACCATCCTTATA............................................... 231.000.00---1.00-------------------------------------
...............................................................................................................................................................AGGCAGGCGGATCACGAGGTGT..................................................................... 221.000.00------------------------------------1.00----
..............................................................................................................................TCACGCCTGTAATCCCAATCGA...................................................................................................... 221.000.00-----------------------------------1.00-----
....................................................................................................................................................................................................CCTGGCTAACATAGTGAGGTC................................. 211.000.001.00----------------------------------------
.....................................................................................................................TACAGGCGTGAGCCACGGTG................................................................................................................. 2001.001.00----------1.00------------------------------
...............................................................................................................................................ACACTTTGGGAGGCCAAGGCAGGCGAG................................................................................ 271.000.00---------------------1.00-------------------
................................................................................................................................................................GGCAGGCGGATCACGAGGTCAGGAGATAGG............................................................ 301.000.00-1.00---------------------------------------
....................................................................................................................................CTGTAATCCCAACACTTTGGGAGCAGC........................................................................................... 271.000.00---------------------------1.00-------------
............................................................................................................................................................................................................ACATAGTGAAACCCCGTCTCTACTACGAC................. 291.000.00-1.00---------------------------------------
..............................................................................................................GGCCGGGCACCGTGGCTCACGCCTGTGGCA.............................................................................................................. 301.000.001.00----------------------------------------
......................................................................................................................ACCGTGGCTCACGCCTGTACAGG............................................................................................................. 231.000.001.00----------------------------------------
...............................................................................................................................CACGCCTGTAATCCCAACACTTTC................................................................................................... 241.000.001.00----------------------------------------
............................................................................................................................................................................................................ACATAGTGAAACCCCGTCTCGGA....................... 231.000.001.00----------------------------------------
.....................................................................................................................CACCGTGGCTCACGCCTGTAGCCT............................................................................................................. 241.000.00-1.00---------------------------------------
.....................................................................................................................................................................................GGAGATCGAGACCATCCTGGCTAACATAAGC...................................... 311.000.00-1.00---------------------------------------