ID: uc002mem.1_intron_1_0_chr19_6361952_f.5p
GENE: CLPP(2)
chr19:6361902-6362151+


(1)
AGO2.ip
(4)
B-CELL
(11)
BREAST
(10)
CELL-LINE
(3)
CERVIX
(2)
HEART
(1)
LIVER
(1)
OTHER
(26)
SKIN
(1)
UTERUS

Sense strand
ACATCTACTCGCGGCTGCTGCGGGAGCGCATCGTGTGCGTCATGGGCCCGGTGAGCGCCCCGCGCCGGGACCCTCCCCAGGACTCTCCCAAGCGCCTGCCGACACTCCCTGCGCCCCTCCTTCCCTGGCCCCAGACTTTCCCTCAGGCTCCGCTCCCCTTCTAACCCCCTTCCCTCCCCTTCTGACTCCCCTCCTGGCTCCCGGTCCCCCAACCCGCTCCTCACCCCTTCTCTGCTCCTCGGCTCTTAAT
.............................................................((((.((((...((..((((...((....))..))))..))...)))).))))........................................................................................................................................
..................................................51......................................................................123.............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191490(GSM715600)
15genomic small RNA (size selected RNA from t. (breast)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR040015(GSM532900)
G623T. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR191465(GSM715575)
113genomic small RNA (size selected RNA from . (breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038858(GSM458541)
MEL202. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR040017(GSM532902)
G645T. (cervix)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................CGCCCCGCGCCGGGACCGGGG..............................................................................................................................................................................2128.000.50---1.00-1.00---1.00------------1.00-----------------1.00---1.00--1.00---1.00---------
.........................................................CCCCGCGCCGGGACCGGG...............................................................................................................................................................................187.000.00---2.00-----1.00-1.00-------------------1.00---------1.00----------1.00--------
.........................................................CCCCGCGCCGGGACCGGGG..............................................................................................................................................................................195.000.00-3.00-----2.00-----------------------------------------------------
.......................................................CGCCCCGCGCCGGGACCGG................................................................................................................................................................................1924.000.50-----1.00-----------1.00---------1.00-1.00-------------------------------
.........................................................................................................TCCCTGCGCCCCTCCCTTG..............................................................................................................................194.000.00------------------1.00-------1.00------------1.00-----1.00---------------
..........GCGGCTGCTGCGGGAGCG..............................................................................................................................................................................................................................1813.003.00--------1.00-------1.00-------------------------------------1.00------
.........................................................CCCCGCGCCGGGACCGG................................................................................................................................................................................173.000.00-1.00-------------------1.00---------------------------1.00-----------
.......................................................CGCCCCGCGCCGGGACCGGG...............................................................................................................................................................................2023.000.50-----------------------1.001.00-----------1.00------------------------
.........................................................................................................TCCCTGCGCCCCTCCCT................................................................................................................................172.000.00------------2.00------------------------------------------------
..ATCTACTCGCGGCTGCTGCGGGAGC...............................................................................................................................................................................................................................2512.002.00--2.00----------------------------------------------------------
..............................................................................................................................................TCAGGCTCCGCTCCCG............................................................................................162.000.002.00------------------------------------------------------------
........................................................GCCCCGCGCCGGGACCGGG...............................................................................................................................................................................192.000.00------------------------------1.00-----------1.00------------------
.........CGCGGCTGCTGCGGGAGTGCA............................................................................................................................................................................................................................211.000.00-------------1.00-----------------------------------------------
..............................................................................................................................................TCAGGCTCCGCTCCCGA...........................................................................................171.000.001.00------------------------------------------------------------
........TCGCGGCTGCTGCGGGAGCGCA............................................................................................................................................................................................................................2211.001.00-------------1.00-----------------------------------------------
......ACTCGCGGCTGCTGCGCGCT................................................................................................................................................................................................................................201.000.00----------------------------1.00--------------------------------
..............................................................................................................................................TCAGGCTCCGCTCCCATCG.........................................................................................191.000.001.00------------------------------------------------------------
.........CGCGGCTGCTGCGGGAGCG..............................................................................................................................................................................................................................1911.001.00--------------------------------------------------1.00----------
...........CGGCTGCTGCGGGAGCGCA............................................................................................................................................................................................................................1911.001.00------------------------------------------------1.00------------
...TCTACTCGCGGCTGCTGCGGGAGGGC.............................................................................................................................................................................................................................261.000.00---------------1.00---------------------------------------------
....................................................................................CTCCCAAGCGCCTGCCGC....................................................................................................................................................181.000.00---------------------------------1.00---------------------------
..............................................................................................................................................TCAGGCTCCGCTCCCGAT..........................................................................................181.000.00-------------------1.00-----------------------------------------
..............................................................................................................................................TCAGGCTCCGCTCCCAAT..........................................................................................181.000.001.00------------------------------------------------------------
.......................................................CGCCCCGCGCCGGGACCGGTG..............................................................................................................................................................................2121.000.50----1.00--------------------------------------------------------
....................CGGGAGCGCATCGTGTGCG...................................................................................................................................................................................................................1911.001.00--1.00----------------------------------------------------------
........................................................GCCCCGCGCCGGGACCGGGC..............................................................................................................................................................................201.000.00-1.00-----------------------------------------------------------
........................................................GCCCCGCGCCGGGACCGG................................................................................................................................................................................181.000.00----1.00--------------------------------------------------------
.....TACTCGCGGCTGCTGCGGG..................................................................................................................................................................................................................................1911.001.00--------1.00----------------------------------------------------
.........................................................................................................TCCCTGCGCCCCTCCCATC..............................................................................................................................191.000.00----1.00--------------------------------------------------------
............................................................................................................................................................................................................TCCCCCAACCCGCTCC..............................1611.001.00-----------------------------------1.00-------------------------
.CATCTACTCGCGGCTGCT.......................................................................................................................................................................................................................................1811.001.00-----------1.00-------------------------------------------------
..................................................................................................................................................................AACCCCCTTCCCTCCTCCC.....................................................................191.000.00--------------------------------1.00----------------------------
.................................................................................................................CCCCTCCTTCCCTGGCCCCAGACTTTCCCCCAG........................................................................................................331.000.00-------------------------------------------------------1.00-----
..........GCGGCTGCTGCGGGAGC...............................................................................................................................................................................................................................1720.500.50--------------------------------------------------------0.50----
...........CGGCTGCTGCGGGAGC...............................................................................................................................................................................................................................1620.500.50---------------0.50---------------------------------------------
.......................................................CGCCCCGCGCCGGGACC..................................................................................................................................................................................1720.500.50---------------------------------------------------------0.50---
.......................................................CGCCCCGCGCCGGGA....................................................................................................................................................................................1590.220.22-----------------------------------------------------------0.110.11

Antisense strand
ACATCTACTCGCGGCTGCTGCGGGAGCGCATCGTGTGCGTCATGGGCCCGGTGAGCGCCCCGCGCCGGGACCCTCCCCAGGACTCTCCCAAGCGCCTGCCGACACTCCCTGCGCCCCTCCTTCCCTGGCCCCAGACTTTCCCTCAGGCTCCGCTCCCCTTCTAACCCCCTTCCCTCCCCTTCTGACTCCCCTCCTGGCTCCCGGTCCCCCAACCCGCTCCTCACCCCTTCTCTGCTCCTCGGCTCTTAAT
.............................................................((((.((((...((..((((...((....))..))))..))...)))).))))........................................................................................................................................
..................................................51......................................................................123.............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191490(GSM715600)
15genomic small RNA (size selected RNA from t. (breast)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR040015(GSM532900)
G623T. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR191465(GSM715575)
113genomic small RNA (size selected RNA from . (breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038858(GSM458541)
MEL202. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR040017(GSM532902)
G645T. (cervix)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
............................................................................................................................................................................................................GAGGAGCGGGTTGGGGGA............................ 1812.002.00--------------2.00----------------------------------------------
...................................................................................................................................................................................TTCTGACTCCCCTCCAAA..................................................... 182.000.00----------------------------------------------1.00------1.00-------
.................................................................................................................................................................................................................................CCTTCTCTGCTCCTCGAC....... 182.000.00------2.00------------------------------------------------------
......................................................................................................................................................................................................................GCAGAGAAGGGGTGAGGAGCG............... 2111.001.00-------------------------------------1.00-----------------------
.....................................................................................................................................................................................................................................ATTAAGAGCCGAGGAGCAGAG 2111.001.00-------------------------1.00-----------------------------------
............................................................................................................................CTGGCCCCAGACTTTCCCC........................................................................................................... 191.000.00----------------------------------1.00--------------------------
........................................................................................................CTCCCTGCGCCCCTCCTTGCA............................................................................................................................. 211.000.00----------1.00--------------------------------------------------
..............................................................................................................................................................................................CTCCTGGCTCCCGGTCCCCCA....................................... 211.000.00----------1.00--------------------------------------------------
...............................................................................................................................................................................................................GGGTGAGGAGCGGGTTGGG........................ 1911.001.00-------------------------------------------1.00-----------------
..................................................................................................CGCAGGGAGTGTCGG......................................................................................................................................... 1511.001.00--------------------1.00----------------------------------------
..........................................................................................................................................TCCCTCAGGCTCCGCTCCC............................................................................................. 191.000.00--------------------------------------1.00----------------------
....................................................................................................................................................................................................................AGGGGTGAGGAGCGGG...................... 1660.170.17-----0.17-------------------------------------------------------
..........................................................GGGTCCCGGCGCGGG................................................................................................................................................................................. 1570.140.14----------------------------------------------------------0.14--