ID: uc002mek.2_intron_1_0_chr19_6213420_r
GENE: (10)
chr19:6213370-6213786-


(1)
AGO2.ip 		(2)
B-CELL 		(3)
BRAIN 		(4)
BREAST 		(12)
CELL-LINE 		(18)
CERVIX 		(3)
HEART 		(2)
HELA 		(1)
KIDNEY 		(2)
OTHER 		(1)
RRP40.ip 		(12)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AGTCCTGCAGCAAGCCTGAGAAGATCCTCAAGAAGGGCACCTACGACAAGGTGGGGGGGCACCTACGACAAGGCGGGGAGGCTACGGAGGGGTGGGTGGTGGGAGTTGCAGCCAGTGGAGGACCCCAGAGCCCCCCAACACCCCACAGTTGGACTCTTCCTGGGCAGGAGCAGGGACAGTCCTTCCTCCCCTCCCGGTGTGGCCTTGGAGCTGAGGGGCTGCCCCTGCAGCCTTGGGCCTTCCTTGGTTTGGATGTGGCTACCTCTGTCCTGTGCTGGGATGGACTGGGTCATGGGTGGGGCTGGGCATGGGAGCAGGAAGGGTCCAGGGCCCCCACACGCTGCTGAGACCTGCCCCCCCTCCCCAGGCCTACACGGATGAGCTGGTGGAGCTACACCGGAGGCTGATGGCGCTGCG
................................................................................................................................................................................((((((..(((((((.((((((..(((((.((.(((((((((...))))).)))))).)))))...((..((..((((..((....))..))))...))..))....))))))....))).))))..)))).))...........................................................................................................
............................................................................................................................................................................173............................................................................................................................................316...................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR040036(GSM532921)
G243N. (cervix)		SRR040006(GSM532891)
G601N. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR343336SRR040032(GSM532917)
G603N. (cervix)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR343337SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040026(GSM532911)
G220N. (cervix)		SRR040010(GSM532895)
G529N. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040042(GSM532927)
G428N. (cervix)		SRR040034(GSM532919)
G001N. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR040041(GSM532926)
G612T. (cervix)		SRR040030(GSM532915)
G013N. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR040016(GSM532901)
G645N. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR040031(GSM532916)
G013T. (cervix)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR040035(GSM532920)
G001T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................................................................................................AGTCCTTCCTCCCCTGCCA.............................................................................................................................................................................................................................1933.000.002.001.003.00--2.003.003.00-2.001.00-2.002.002.001.00------1.001.00---1.00----1.00-1.00-1.00---1.00--1.00-----------------1.00----
...................................................................................................................................................................................................................................................................................................ATGGGTGGGGCTGGGCATGGGAAAAA....................................................................................................263.000.00--------3.00---------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGCTACACCGG.................1512.002.00-----------------2.00------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................CGGATGAGCTGGTGGAGCTACA.....................2212.002.00---1.00-----------------------------1.00--------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................TACACCGGAGGCTGATGGCG.....2011.001.00----------------1.00-------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................TACACGGATGAGCTGG...............................1611.001.00------------------------1.00-----------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................ACGGATGAGCTGGTGGAGC.........................1911.001.00------------------------------------------------1.00-----------------
.......................................................................................................................................................................................................................................................................................................................................................................................................CTACACCGGAGGCTGATGGCG.....2111.001.00----------------------------------------------------1.00-------------
...................................................................................................................................................................................................................................................................................................ATGGGTGGGGCTGGGCATGGG.........................................................................................................2111.001.00-------------------------------------------------1.00----------------
...............................................................................................................................................................................................................................................................................................................................................................................................TGGTGGAGCTACACCGGAGGCTG...........2311.001.00--------------------1.00---------------------------------------------
..............................................................................................................................................................................................CTCCCGGTGTGGCCTTGGAGCTGA...........................................................................................................................................................................................................2411.001.00---------------------------------------1.00--------------------------
............................CAAGAAGGGCACCTACGACGGGT..............................................................................................................................................................................................................................................................................................................................................................................231.000.00------------------------------------------------------1.00-----------
..........................................................................................................................................................................................................................................................................................................................................................................................................CACCGGAGGCTGATGGCGC....1911.001.00-----------------------------------------1.00------------------------
.................................................................................................................................................................................AGTCCTTCCTCCCCTGCCG.............................................................................................................................................................................................................................191.000.00--1.00---------------------------------------------------------------
.........GCAAGCCTGAGAAGATCCTCAAGAAGGG............................................................................................................................................................................................................................................................................................................................................................................................2811.001.00-------------------------------------------------------1.00----------
.........................................................................................................................................................................................................................................................................................................................................................................................................ACACCGGAGGCTGATGGCG.....1911.001.00------------------1.00-----------------------------------------------
.................................................................................................................................................CAGTTGGACTCTTCCTGGGCAGGA........................................................................................................................................................................................................................................................2411.001.00-----------------------------------------------------------1.00------
........................................................................................................................................................................................................................................................................................................TGGGGCTGGGCATGGG.........................................................................................................1601.001.00-------------------------------1.00----------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................GCTACACCGGAGGCTGATGGC......2111.001.00------------------1.00-----------------------------------------------
.......................ATCCTCAAGAAGGGCACC........................................................................................................................................................................................................................................................................................................................................................................................1811.001.00----1.00-------------------------------------------------------------
.........................................................................................................................................................................................CTCCCCTCCCGGTGTGGC......................................................................................................................................................................................................................1811.001.00----1.00-------------------------------------------------------------
....................................................................................CGGAGGGGTGGGTGGTGGT..........................................................................................................................................................................................................................................................................................................................191.000.00-------------------1.00----------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................TGAGACCTGCCCCCCCTG.......................................................181.000.001.00-----------------------------------------------------------------
......GCAGCAAGCCTGAGAAGAT........................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00--------------------------------------------1.00---------------------
...................................................................................................................................................................GCAGGAGCAGGGACAGTT............................................................................................................................................................................................................................................181.000.00------------------------------------------------------------1.00-----
............................................................................................................................................................................................................................................................................................................................................................................................AGCTGGTGGAGCTACACCGG.................2011.001.00-----------------------------------1.00------------------------------
....................................................................................................................................................................................................................................................TGGTTTGGATGTGGCGCT...........................................................................................................................................................181.000.00----------------------------------------------1.00-------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................ACCGGAGGCTGATGGCGCC...191.000.00---------------1.00--------------------------------------------------
....................................................................................................................................................................................................................................................................................................TGGGTGGGGCTGGGCATGGGAGCAGGAAGGGCC............................................................................................331.000.00-----------1.00------------------------------------------------------
...............................................................................................................................................................CTGGGCAGGAGCAGGGGTG...............................................................................................................................................................................................................................................191.000.001.00-----------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................ACGGATGAGCTGGTGGAGCTACA.....................2311.001.00---1.00--------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................TACACGGATGAGCTGAACT............................191.000.00---1.00--------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................AGCTGGTGGAGCTACACCGGATGCT............251.000.00-----------------------------------------------------1.00------------
.............................................................................................................AGCCAGTGGAGGACCGA...................................................................................................................................................................................................................................................................................................171.000.00--------------------------------------------------1.00---------------
...................................................................................................................................................................................................................................................................................................................................................................................ACACGGATGAGCTGGTGG............................1811.001.00---------------------------------------------------1.00--------------
....................................................................................................................................................................................................................................................................................................................................................................................CACGGATGAGCTGGTTTTT..........................191.000.00-------------------------1.00----------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................CGGAGGCTGATGGCGCTGCG2011.001.00---------------------------------------------------------1.00--------
........................................................................................................................................................................................................................................................................................TGGACTGGGTCATGGGTGGGGC...................................................................................................................2211.001.00-------------------1.00----------------------------------------------
..................................................................................................................................................................................................................................................CTTGGTTTGGATGTGATGA............................................................................................................................................................191.000.00-----------------------------------------------1.00------------------
...................................................................................................................................................................................................................................................................................................ATGGGTGGGGCTGGGCATG...........................................................................................................1911.001.00----------------1.00-------------------------------------------------
.........GCAAGCCTGAGAAGATCCTCAAGAA...............................................................................................................................................................................................................................................................................................................................................................................................2511.001.00----1.00-------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................TGCCCCCCCTCCCCAGGCAT..............................................201.000.00---------------------------------------------1.00--------------------
...........................................................................................................................................................................................................................................................................................................................................................................................GAGCTGGTGGAGCTACACCGGAGGCTGA..........2811.001.00----------------------------------------------------------1.00-------
............................................................................................................................................................................................................................................................................................................................................................ACCTGCCCCCCCTCCCCCCG.................................................201.000.00--------------------------------------1.00---------------------------
...............................................................................................................................................................................................................................................................................GTGCTGGGATGGACTG..................................................................................................................................1640.250.25--------------------------------------------------------------0.25---
.....................................................................................................................................................................................................................................................................................GGATGGACTGGGTCA.............................................................................................................................1580.250.25--------------------0.12-------------------------------------------0.12-
.......................................................................................................................................................................................................................................................................................................................................................................................GGATGAGCTGGTGGAG..........................1660.170.17----------0.17-------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGGAAGGGTCCAGGG.......................................................................................1680.120.12---------------------------------------------------------------0.12--
..........................................................................................................................................................................................................................CTGCCCCTGCAGCCTT.......................................................................................................................................................................................1690.110.11-----------------------------------------------------------------0.11
......................................................................................................................AGGACCCCAGAGCCCC...........................................................................................................................................................................................................................................................................................1690.110.11-----------0.11------------------------------------------------------

Antisense strand
AGTCCTGCAGCAAGCCTGAGAAGATCCTCAAGAAGGGCACCTACGACAAGGTGGGGGGGCACCTACGACAAGGCGGGGAGGCTACGGAGGGGTGGGTGGTGGGAGTTGCAGCCAGTGGAGGACCCCAGAGCCCCCCAACACCCCACAGTTGGACTCTTCCTGGGCAGGAGCAGGGACAGTCCTTCCTCCCCTCCCGGTGTGGCCTTGGAGCTGAGGGGCTGCCCCTGCAGCCTTGGGCCTTCCTTGGTTTGGATGTGGCTACCTCTGTCCTGTGCTGGGATGGACTGGGTCATGGGTGGGGCTGGGCATGGGAGCAGGAAGGGTCCAGGGCCCCCACACGCTGCTGAGACCTGCCCCCCCTCCCCAGGCCTACACGGATGAGCTGGTGGAGCTACACCGGAGGCTGATGGCGCTGCG
................................................................................................................................................................................((((((..(((((((.((((((..(((((.((.(((((((((...))))).)))))).)))))...((..((..((((..((....))..))))...))..))....))))))....))).))))..)))).))...........................................................................................................
............................................................................................................................................................................173............................................................................................................................................316...................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR040036(GSM532921)
G243N. (cervix)		SRR040006(GSM532891)
G601N. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR343336SRR040032(GSM532917)
G603N. (cervix)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR343337SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040026(GSM532911)
G220N. (cervix)		SRR040010(GSM532895)
G529N. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040042(GSM532927)
G428N. (cervix)		SRR040034(GSM532919)
G001N. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR040041(GSM532926)
G612T. (cervix)		SRR040030(GSM532915)
G013N. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR040016(GSM532901)
G645N. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR040031(GSM532916)
G013T. (cervix)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR040035(GSM532920)
G001T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........................................................................................................................................................................................TCCCCTCCCGGTGTGCG...................................................................................................................................................................................................................... 172.000.00-----1.00---1.00--------------------------------------------------------
..............................................................................................................................................................................GACAGTCCTTCCTCCCCGCT............................................................................................................................................................................................................................... 202.000.00-1.00------------------------------------------------------1.00---------
................................................................................................................................................................................CAGTCCTTCCTCCCCGGC............................................................................................................................................................................................................................... 181.000.00---------------------1.00--------------------------------------------
.......................................................................................................AGTTGCAGCCAGTGGGTTT....................................................................................................................................................................................................................................................................................................... 191.000.00----------1.00-------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................CCCCCCTCCCCAGGCCTAT............................................ 191.000.00-------------------------------------1.00----------------------------
..........................................................GCCTCCCCGCCTTGTCGTAGGTGC............................................................................................................................................................................................................................................................................................................................................... 2411.001.00------------------------------1.00-----------------------------------
......................................................................................................................................................................................................................................................GTTTGGATGTGGCTAATTG........................................................................................................................................................ 191.000.001.00-----------------------------------------------------------------
..................................................................................................................................................................................................................................................................CTACCTCTGTCCTGTTTT............................................................................................................................................. 181.000.00----------------------------1.00-------------------------------------
...............................................................................................................................................................................ACAGTCCTTCCTCCCCAGCG.............................................................................................................................................................................................................................. 201.000.00-1.00----------------------------------------------------------------
................................................................................................................................................................................CAGTCCTTCCTCCCCATGC.............................................................................................................................................................................................................................. 191.000.00-1.00----------------------------------------------------------------
.........................................................................................................................................................................................................................................TGGGCCTTCCTTGGTTGA...................................................................................................................................................................... 181.000.00--------------------------1.00---------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................CCGGAGGCTGATGGCAGCT.. 191.000.00-----------------------------1.00------------------------------------
...............................................................................................................................................................................ACAGTCCTTCCTCCCCAGCT.............................................................................................................................................................................................................................. 201.000.00------------------------------------------1.00-----------------------
......................................................................................................................................................................................................................................................GTTTGGATGTGGCTAAATG........................................................................................................................................................ 191.000.001.00-----------------------------------------------------------------