ID: uc002mbu.1_intron_21_0_chr19_5239075_r.3p
GENE: PTPRS(9)
chr19:5239025-5239274-


(5)
AGO2.ip
(2)
BRAIN
(2)
BREAST
(19)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(1)
LIVER
(2)
OTHER
(18)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
CCTCTCTCTCCCCTCTACCTCTCTCCCTCATCCCTCTCTGTCCCTCTCTGCCGCACCCCTGTCTCTATTTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCCCCCCTCTGTTTCTGTCTCTCTCTCTCTCCCCTTTGTTTCTGTCTCTCTCTCTCTCTCCCCCATCCCTCTCTGTCCTTCTCTGCCCTGCCCCCAGGTGGGAAGGACCTTCGACCCGACGACTTCCTACGTGGTGGAGGACCTGAA

.............................................................................78............................................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925PAZD5GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR038861(GSM458544)
MM466. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR037936(GSM510474)
293cand1. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR038853(GSM458536)
MELB. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................CTCTCTCTCTCTCTCTCCCCC...................................................................................................................................................210166.00166.0032.0022.0024.0030.0021.0024.0013.00--------------------------------------------
...................................................................................TCTCTCTCTCTCTCTCCCCC...................................................................................................................................................20074.0074.0018.0022.0020.004.004.00-6.00--------------------------------------------
................................................................................CTCTCTCTCTCTCTCTCTCCCCC...................................................................................................................................................23020.0020.006.001.00-4.005.001.003.00--------------------------------------------
....................................................................................................................................................CTCTCTCTCTCTCTCCCCCA..................................................................................20013.0013.001.00-2.003.005.002.00---------------------------------------------
.................................................................................TCTCTCTCTCTCTCTCTCCCCC...................................................................................................................................................2209.009.001.005.003.00------------------------------------------------
........................................................................CTGTCTCTCTCTCTCTCTCTCTCTCTGCCT....................................................................................................................................................308.000.00----------1.003.00----1.001.00-------------1.00-----------1.00-------
................................................................................CTCTCTCTCTCTCTCTCTCCCC....................................................................................................................................................2207.007.001.002.001.00--2.001.00--------------------------------------------
.................................................................................TCTCTCTCTCTCTCTCTCCCC....................................................................................................................................................2105.005.00-1.001.001.001.00-1.00--------------------------------------------
..................................................................................CTCTCTCTCTCTCTCTCCCCCT..................................................................................................................................................2204.004.002.001.00--1.00----------------------------------------------
....................................................................................CTCTCTCTCTCTCTCCCCG...................................................................................................................................................194.000.00-2.00----2.00--------------------------------------------
..............................................................................CTCTCTCTCTCTCTCTCTCTCCCCC...................................................................................................................................................2503.003.001.00-1.00---1.00--------------------------------------------
...................................................................................................................................................TCTCTCTCTCTCTCTCCCCCA..................................................................................2103.003.00-1.001.001.00-----------------------------------------------
............................................................................................................................................................................................................GAAGGACCTTCGACCCGACG..........................2013.003.00---------3.00-----------------------------------------
..................................................................................CTCTCTCTCTCTCTCTCCCG....................................................................................................................................................203.000.002.00------------------------------------1.00-------------
........................................................................................................................TCTCTCTCTCTCTCCCCGG...............................................................................................................193.000.00--------3.00------------------------------------------
....................................................................................CTCTCTCTCTCTCTCCCG....................................................................................................................................................182.000.00-2.00-------------------------------------------------
......................................................................................................................................................CTCTCTCTCTCTCCCCCA..................................................................................1802.002.00-1.00--1.00----------------------------------------------
....................................................................................................................................................CTCTCTCTCTCTCTCCCCGG..................................................................................202.000.002.00--------------------------------------------------
.......................................................................................TCTCTCTCTCTCCCCCTCCCCGTCC..........................................................................................................................................252.000.00--------------2.00------------------------------------
.....................................................................TCTCTGTCTCTCTCTCTCTCTCTATTT..........................................................................................................................................................271.000.00-------1.00-------------------------------------------
......................................................................................CTCTCTCTCTCTCCCCCT..................................................................................................................................................1801.001.00---1.00-----------------------------------------------
..............................................................................CTCTCTCTCTCTCTCTCTCTCCC.....................................................................................................................................................2301.001.00-1.00-------------------------------------------------
...............................................................................................................................................................................................................................GACTTCCTACGTGGTGGAGGACCTGA.2611.001.00----------------------------1.00----------------------
.................................................................................................................................................................................................................ACCTTCGACCCGACGACTTCC....................2111.001.00--------1.00------------------------------------------
....................................................................................CTCTCTCTCTCTCTCCCCCTGTCA..............................................................................................................................................241.000.00-------------1.00-------------------------------------
................................................................................................CTCCCCCTCCCCCCTCTCTC......................................................................................................................................201.000.00-------------------1.00-------------------------------
..................................................................................CTCTCTCTCTCTCTCTCCCCG...................................................................................................................................................211.000.001.00--------------------------------------------------
................................................................................................................................TCTCTCCCCTTTGTTCTCC.......................................................................................................191.000.00-----------------------------1.00---------------------
............................................................................CTCTCTCTCTCTCTCTCTCTCTCCCGCG..................................................................................................................................................281.000.00-------1.00-------------------------------------------
..........................................................................................CTCTCTCTCCCCCTCCCCCCTCCT........................................................................................................................................241.000.00----------1.00----------------------------------------
......................................................................................................................................................................................................................................TACGTGGTGGAGGACCTGAAACCC241.000.00--1.00------------------------------------------------
.................................................................................TCTCTCTCTCTCTCTCTCCCCCTCCCCCCGCTC........................................................................................................................................331.000.00----------1.00----------------------------------------
.........................................................................................................................CTCTCTCTCTCTCCCCTAAC.............................................................................................................201.000.00----------------------------------------1.00----------
.......................................................................................................................................................TCTCTCTCTCTCCCCCATCTGTC............................................................................231.000.00-------1.00-------------------------------------------
................................................................................CTCTCTCTCTCTCTCTCTCCCCG...................................................................................................................................................2301.007.001.00--------------------------------------------------
............CTCTACCTCTCTCCCACCC...........................................................................................................................................................................................................................191.000.00---------------------------1.00-----------------------
...............................................................................................................................................................................................................GGACCTTCGACCCGACGAC........................1911.001.00---------1.00-----------------------------------------
........................................................................................................................................................CTCTCTCTCTCCCCCAGGCA..............................................................................201.000.00--------1.00------------------------------------------
......................................................................................CTCTCTCTCTCTCCCCCTCCCCGT............................................................................................................................................241.000.00----------------------------------------------1.00----
.....................................................................................TCTCTCTCTCTCTCCCCCT..................................................................................................................................................1901.001.00-1.00-------------------------------------------------
..................................................................................CTCTCTCTCTCTCTCTCCCCGG..................................................................................................................................................221.000.001.00--------------------------------------------------
.........................................................................................TCTCTCTCTCCCCCTCCCCGTC...........................................................................................................................................221.000.00------------1.00--------------------------------------
....................CTCTCCCTCATCCCTCTCCA..................................................................................................................................................................................................................201.000.00------------------------------------------1.00--------
....................................................................................................................................................................CCCATCCCTCTCTGTCCTTC..................................................................2011.001.00---------------------------------------1.00-----------
...................................................................................TCTCTCTCTCTCTCTCCCCCT..................................................................................................................................................2101.001.00--1.00------------------------------------------------
.......................................................................................................................................................................................................................................ACGTGGTGGAGGACCTGAAA201.000.00-----------------------------------------------1.00---
.......................................................................................................................GTCTCTCTCTCTCTCCCCGGCT.............................................................................................................221.000.00------------------1.00--------------------------------
........................................................................................CTCTCTCTCTCCCCCTCC................................................................................................................................................1801.001.00-----1.00---------------------------------------------
...................................................................................................................................................TCTCTCTCTCTCTCTCCCCCATGCC..............................................................................251.000.00-------1.00-------------------------------------------
...........................................................................TCTCTCTCTCTCTCTCTCTCTCTCCCCCGG.................................................................................................................................................301.000.00-------------1.00-------------------------------------
.....CTCTCCCCTCTACCTCTCACT................................................................................................................................................................................................................................211.000.00-----------------------1.00---------------------------
.....................................................................................................................CTGTCTCTCTCTCTCTCCC..................................................................................................................1901.001.00---1.00-----------------------------------------------
.......................................................................................TCTCTCTCTCTCCCCCTCCCCCCGT..........................................................................................................................................251.000.00--------------------------------------------1.00------
...............................................................................TCTCTCTCTCTCTCTCTCTCCGCCG..................................................................................................................................................251.000.00-------1.00-------------------------------------------
.......................................................................TCTGTCTCTCTCTCTCTCTCTCTCTCTGTGC....................................................................................................................................................311.000.00-------1.00-------------------------------------------
................................................................................................................................................CTGTCTCTCTCTCTCTCTCCCCCCC.................................................................................251.000.00--------------------------------------1.00------------
.....................................................................................................................................................TCTCTCTCTCTCTCCCCCA..................................................................................1901.001.00-1.00-------------------------------------------------
.......................................................................................TCTCTCTCTCTCCCCCTCCCCGCCC..........................................................................................................................................251.000.00----------------1.00----------------------------------
..................................................................................................................................................GTCTCTCTCTCTCTCTCCCCCGCT................................................................................241.000.00------------------1.00--------------------------------
.........................................................CCTGTCTCTATTTCTTTCC..............................................................................................................................................................................191.000.00-----------------1.00---------------------------------
........................................................................................CTCTCTCTCTCCCCCTCCCCGTC...........................................................................................................................................231.000.00-------1.00-------------------------------------------
...........CCTCTACCTCTCTCCCT..............................................................................................................................................................................................................................1760.170.17-------0.17-------------------------------------------

Antisense strand
CCTCTCTCTCCCCTCTACCTCTCTCCCTCATCCCTCTCTGTCCCTCTCTGCCGCACCCCTGTCTCTATTTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCCCCCCTCTGTTTCTGTCTCTCTCTCTCTCCCCTTTGTTTCTGTCTCTCTCTCTCTCTCCCCCATCCCTCTCTGTCCTTCTCTGCCCTGCCCCCAGGTGGGAAGGACCTTCGACCCGACGACTTCCTACGTGGTGGAGGACCTGAA

.............................................................................78............................................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925PAZD5GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR038861(GSM458544)
MM466. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR037936(GSM510474)
293cand1. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR038853(GSM458536)
MELB. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................................................TCTGTCTCTCTCTCTCTCTCCCCCCAG................................................................................ 272.000.00-------2.00-------------------------------------------
.............................................................................GGGGAGAGAGAGAGAGAGAGAGAGA.................................................................................................................................................... 2502.002.00---1.00-----------------1.00-----------------------------
..............................................................................GGGGAGAGAGAGAGAGAGAGAGAG.................................................................................................................................................... 2402.002.00----2.00----------------------------------------------
...................................................................................................................................................GGGGGAGAGAGAGAGAGAGA................................................................................... 2002.002.00-2.00-------------------------------------------------
......................CTCCCTCATCCCTCTTTGT................................................................................................................................................................................................................. 191.000.00------------------------------------1.00--------------
.......................................................................TCTGTCTCTCTCTCTCTCTCTCTCTCTCCCCCCTC................................................................................................................................................ 351.000.00-------1.00-------------------------------------------
...........................................................................GGGGAGAGAGAGAGAGAGAGAGAGAGA.................................................................................................................................................... 2701.001.00---------------------1.00-----------------------------
.......................................................................................TCTCTCTCTCTCCCCCTCCCTTT............................................................................................................................................ 231.000.00--------------------1.00------------------------------
......................................................................................................................................................................................TCTCTGCCCTGCCCCCAGGGCG.............................................. 221.000.00------------------------------------------------1.00--
................................................................................................CTCCCCCTCCCCCCTCTATC...................................................................................................................................... 201.000.00-------------------1.00-------------------------------
.......................................................................................TCTCTCTCTCTCCCCCTCCT............................................................................................................................................... 201.000.00----------------------------------1.00----------------
.............................................................................GGGAGAGAGAGAGAGAGAGAGAGA..................................................................................................................................................... 2401.001.00-----1.00---------------------------------------------
.......................................................................................TCTCTCTCTCTCCCCCTCCACTT............................................................................................................................................ 231.000.00--------------------1.00------------------------------
..............................................................................GGGAGAGAGAGAGAGAGAGAGAG..................................................................................................................................................... 2301.001.00---------------1.00-----------------------------------
..................................................................................CTCTCTCTCTCTCTCTCCCCCGGC................................................................................................................................................ 2401.000.00--------------------------1.00------------------------
...................................................................................................................................................................................CCTTCTCTGCCCTGCCCCC.................................................... 191.000.00-----------------------------------------1.00---------
............................................................................................CTCTCTCCCCCTCCCTCAG........................................................................................................................................... 191.000.00---------------------------------1.00-----------------
..........................................................................................................................................................................CCTCTCTGTCCTTCTCATA............................................................. 191.000.00--------1.00------------------------------------------
................................................................................................CTCCCCCTCCCCCCTTA......................................................................................................................................... 171.000.00-------------------------1.00-------------------------
......................................................................................CTCTCTCTCTCTCCCCCTCCTTTT............................................................................................................................................ 241.000.00---------------------------------------------1.00-----
...........................................................................TCTCTCTCTCTCTCTCTCTCTCTCCCCA................................................................................................................................................... 281.000.00------------------------------1.00--------------------
............................................................................CTCTCTCTCTCTCTCTCTCTCTCCCGGC.................................................................................................................................................. 281.000.00----------------------1.00----------------------------
................................................................................GGGGAGAGAGAGAGAGAGAGAG.................................................................................................................................................... 2201.001.00--1.00------------------------------------------------
.................................................................................GGGGGAGAGAGAGAGAGAGAGA................................................................................................................................................... 2201.001.00---------------1.00-----------------------------------
...............................................................................................................................................TCTGTCTCTCTCTCTCTCTCCCCCCA................................................................................. 261.000.00-------1.00-------------------------------------------
.....................................CTGTCCCTCTCTGCCGGC................................................................................................................................................................................................... 181.000.00--------------------------------1.00------------------
..................................................................ATTTCTCTGTCTCTCTCTCTGA.................................................................................................................................................................. 221.000.00------------------------1.00--------------------------
...............................................................................TCTCTCTCTCTCTCTCTCTCCCAAGA................................................................................................................................................. 261.000.00-----------------------------------1.00---------------
.........................................CCCTCTCTGCCGCACCCTGC............................................................................................................................................................................................. 201.000.00------------1.00--------------------------------------
...............................................................................TCTCTCTCTCTCTCTCTCTCCCCCAA................................................................................................................................................. 261.000.00-1.00-------------------------------------------------
..............................................................................GGGGGAGAGAGAGAGAGAGAGAGAG................................................................................................................................................... 2501.001.00-1.00-------------------------------------------------
........................................................................................................................................................................................CCTGGGGGCAGGGCAGA................................................. 1750.200.20-------------------------------------------------0.20-
........................CAGAGAGGGATGAGGG.................................................................................................................................................................................................................. 1690.110.11--------------------------------------------------0.11