ID: uc002lvb.3_intron_19_0_chr19_2216765_f
GENE: (20)
chr19:2216715-2217003+


(1)
AGO2.ip
(4)
B-CELL
(2)
BRAIN
(4)
BREAST
(13)
CELL-LINE
(1)
CERVIX
(2)
FIBROBLAST
(3)
HEART
(1)
HELA
(4)
LIVER
(1)
OTHER
(1)
RRP40.ip
(19)
SKIN
(1)
UTERUS
(2)
XRN.ip

Sense strand
CAGGACCACACGGTGCCCGGCAGGCCGGCTGCCAGTGAGCTGCATTCGAGGTGAGTGCCCTGGTGGGGCTGGGGGTCTGCAGCTGGTACCTGCCGACTCTGCCTGGTGTGCTCAGGCTGTCGGGTTCTCAGCAGGAGTGTGTTTGTTGAGGAGACTGAGGTGGGGAGGTGCTGGGCCAGGCCGCTGCCTCTGAGTGCCAGCCCACGGCCCTCGAGAGTGACTGCAGCTTCTCATTCCAGAGCTGAGCACACCAAGGAGAACGGCCTTCCCTACCAGAGCCCCAGCGTGC
...........................................................................................................................................................((..((((((((.(((..(((...))).....(((((((.(((.......))).))).)))).....))).))))))))..))...................................................
...........................................................................................................................................................156................................................................................239................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR040031(GSM532916)
G013T. (cervix)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR191524(GSM715634)
119genomic small RNA (size selected RNA from . (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038862(GSM458545)
MM472. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343334SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
........................................................................................................................................................................................................................GTGACTGCAGCTTCTCATTCCAG..................................................23150.0050.0031.00-2.00------1.00-2.00---1.00--1.00----1.001.00-1.001.00-----1.00----1.001.001.001.00-1.00----1.001.00--------
.........................................................................................................................................................................................................................TGACTGCAGCTTCTCATTCCAG..................................................22132.0032.0024.00-----1.00------1.001.00-----1.00-1.00--1.00---1.00----------------------1.00-----
......................................................................................................................................................................................................................GAGTGACTGCAGCTTCTCATT......................................................21116.0016.00-16.00--------------------------------------------------------
........................................................................................................................................................................................................................GTGACTGCAGCTTCTCATTCCAGA.................................................24115.0015.0013.00------------------------------------1.00---------------1.00----
.........................................................................................................................................................................................................................TGACTGCAGCTTCTCATTCCAGAA................................................24114.0010.0013.00--1.00------------------------------------------------------
.........................................................................................................................................................................................................................TGACTGCAGCTTCTCATTCCAGA.................................................23110.0010.009.00------------------------------------------------------1.00--
........................................................................................................................................................................................................................GTGACTGCAGCTTCTCATTCCAGAA................................................2514.0015.001.00--2.00----------------------------1.00-------------------------
.....................................................................................................................................................................................................................AGAGTGACTGCAGCTTCTCATTC.....................................................2313.003.00----3.00-----------------------------------------------------
.........................................................................................................................................................................................................................TGACTGCAGCTTCTCATTCCAGAG................................................2412.002.002.00---------------------------------------------------------
...................................................................................................................................................................................................................CGAGAGTGACTGCAGCTTCTG.........................................................212.000.00--------2.00-------------------------------------------------
....................................................................................................................................................................................................................................................AGCACACCAAGGAGAACGGCCTCCCC...................261.000.00------------------------------------------1.00---------------
.......................................................................................................................................................................................................................AGTGACTGCAGCTTCTCATTCCAG..................................................2411.001.00------1.00---------------------------------------------------
................................................................................................................................................................TGGGGAGGTGCTGGGATA...............................................................................................................181.000.00-------------------------------1.00--------------------------
....................................................................................................................................................................................CCGCTGCCTCTGAGTCG............................................................................................171.000.00----------------------------------1.00-----------------------
.........................................................................................................................................................................................................................TGACTGCAGCTTCTCATTACAG..................................................221.000.00----------------------------------------------1.00-----------
...................................................................................................................................................................................................................CGAGAGTGACTGCAGCTTCTCATTCCA...................................................2711.001.00------------------------------------------------------1.00---
...............................................................................................................................................................................................................................................................GAGAACGGCCTTCCCTACCA..............2011.001.00-----1.00----------------------------------------------------
..................................................................................................................................................................................................................................................................AACGGCCTTCCCTACCAGAGCCCCAGC....2711.001.00--1.00-------------------------------------------------------
..............................................................................................................................................................................................................................................................GGAGAACGGCCTTCCCTACC...............2011.001.00-----1.00----------------------------------------------------
...................................................................................................................................................................................................GCCAGCCCACGGCCCTGGC...........................................................................191.000.00------------1.00---------------------------------------------
..................................................................................................................................................................................................................TCGAGAGTGACTGCAGC..............................................................1711.001.00-----------------1.00----------------------------------------
.......................................................................GGGGTCTGCAGCTGGTGTTG......................................................................................................................................................................................................201.000.00---------1.00------------------------------------------------
............................................................................................................................................................................................................................................................AAGGAGAACGGCCTTCCCTACC...............2211.001.00----------------1.00-----------------------------------------
....................CAGGCCGGCTGCCAGTGAGCTGCATTCGAG...............................................................................................................................................................................................................................................3011.001.00-----------------------------------1.00----------------------
...................................................................................................................................................................................................................CGAGAGTGACTGCAGCTTCTCTG.......................................................231.000.00---------------------1.00------------------------------------
...........................................................................................GCCGACTCTGCCTGGCG.....................................................................................................................................................................................171.000.00---------------------------------------------------1.00------
..........................................................................................................TGTGCTCAGGCTGTCGGGT....................................................................................................................................................................1911.001.00------------------------------------1.00---------------------
.......................................................................................................................................................................................................................AGTGACTGCAGCTTCTCATTCC....................................................2211.001.001.00---------------------------------------------------------
................................................................................................................................................................................................................CCTCGAGAGTGACTGCAGCTTCT..........................................................2311.001.001.00---------------------------------------------------------
..........................................................................................................................................................................................................................GACTGCAGCTTCTCATTCCAG..................................................2111.001.00--1.00-------------------------------------------------------
....................................................................................................................................................AGGAGACTGAGGTGGGGGGG.........................................................................................................................201.000.00-----------------------------------------------1.00----------
....................................................................................................................................................AGGAGACTGAGGTGGGGCATC........................................................................................................................211.000.00----------1.00-----------------------------------------------
....................................................................................................................................................AGGAGACTGAGGTGGGGGGAC........................................................................................................................211.000.00----------1.00-----------------------------------------------
...............................................................................................................................................................................................................CCCTCGAGAGTGACTGCAGCTTCTCATTTCTG..................................................321.000.00-------1.00--------------------------------------------------
..............................................................................................................................CTCAGCAGGAGTGTGTTTGCC..............................................................................................................................................211.000.00----------------------------1.00-----------------------------
....................................................................................................................................................................................................................................................AGCACACCAAGGAGAAAA...........................181.000.00--------------------------------------------------1.00-------
............................................................................................................................................................................................................................................................AAGGAGAACGGCCTTCCCTACCAGAGCCCCA......3111.001.00-----1.00----------------------------------------------------
.................................................................................................................................................................................................................CTCGAGAGTGACTGCA................................................................1611.001.00--------------------------------------------1.00-------------
...............................................................................................................................................................................................................CCCTCGAGAGTGACTGCAGCTTCTCATTCCAG..................................................3211.001.00-------1.00--------------------------------------------------

Antisense strand
CAGGACCACACGGTGCCCGGCAGGCCGGCTGCCAGTGAGCTGCATTCGAGGTGAGTGCCCTGGTGGGGCTGGGGGTCTGCAGCTGGTACCTGCCGACTCTGCCTGGTGTGCTCAGGCTGTCGGGTTCTCAGCAGGAGTGTGTTTGTTGAGGAGACTGAGGTGGGGAGGTGCTGGGCCAGGCCGCTGCCTCTGAGTGCCAGCCCACGGCCCTCGAGAGTGACTGCAGCTTCTCATTCCAGAGCTGAGCACACCAAGGAGAACGGCCTTCCCTACCAGAGCCCCAGCGTGC
...........................................................................................................................................................((..((((((((.(((..(((...))).....(((((((.(((.......))).))).)))).....))).))))))))..))...................................................
...........................................................................................................................................................156................................................................................239................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR040031(GSM532916)
G013T. (cervix)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR191524(GSM715634)
119genomic small RNA (size selected RNA from . (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038862(GSM458545)
MM472. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343334SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...........................................................................................................GTGCTCAGGCTGTCGGGCG................................................................................................................................................................... 191.000.00-------------------1.00--------------------------------------
....................................................................................................................................................................................................CCAGCCCACGGCCCTCGG........................................................................... 181.000.00---------------------------------------------1.00------------
..................................................................................................................................................................................................................................................................AACGGCCTTCCCTACGGC............. 181.000.00------------------------------1.00---------------------------
...........................................................................................................................................................TGAGGTGGGGAGGTGCCGT................................................................................................................... 191.000.00------1.00---------------------------------------------------
........CCTGCCGGGCACCGTG......................................................................................................................................................................................................................................................................... 1620.500.50--------------------------------------------------------0.50-
.................................................................................................................................................................................CAGAGGCAGCGGCCT................................................................................................. 1580.120.12---------------------------------------------------------0.12