ID: uc002lva.2_intron_8_0_chr19_2112967_r
GENE: (23)
chr19:2112917-2113384-


(1)
AGO1.ip OTHER.mut
(4)
AGO2.ip
(2)
B-CELL
(3)
BRAIN
(6)
BREAST
(20)
CELL-LINE
(3)
CERVIX
(3)
HEART
(4)
LIVER
(2)
OTHER
(14)
SKIN
(1)
UTERUS

Sense strand
CCACCCCACCGCCTGCCCCCGCCCCCGCCCCCGCCCCCGTTCCATCCACGGTAAGAGACTGGCAGCTGGCCAGTGCCAGCCTCGGTGTCTGCAGAGGTCATACCTGGCACTCAGGGAAGAGCCCTGGGTCTCCTGAGGCCCTGTGCTCTCGCGGTCAGCACCGTGCACCTGTGGGACCCAGCACTGAGTGGAGCCGGGGTCATGCTCCCGGGTCCCAGTGGGCCAAGCAGGGGCCAGGGGAAGGGGAGGACAGCCAGGGCCTCTGTGCTCACAGGCTCCCTGTCACTCGGAGGGCACTGTGGCCTCTCAGGCAGGCGTGAGGGCAAGCTGAGGGTGTGTGGCATGGAGGCTGTCTGGGGTGCAGTGGAGTGGGGCCCCTCATTGCCCAGCATGAGCCCCAAGCCCTGGCTCCCTGCAGGGGGAGCTCAGTGTGAACACTGTCACTACCCCGAAGGACGAGTGTGAGGA
.............................................................................................................................................................................................................................................................................................................................................................((((..(((((.(((.((..((((((...(((.(((...))))))))))))..))))))))))..))))..................................................
...........................................................................................................................................................................................................................................................................................................................................................348...................................................................418................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR040019(GSM532904)
G701T. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR040011(GSM532896)
G529T. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR038858(GSM458541)
MEL202. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR553574(SRX182780)
source: Heart. (Heart)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................................................................................................................................................................................................................................................................TCTGGGGTGCAGTGGAGTGG................................................................................................2017.007.00-5.00----------------------------1.00------------------1.00--------
................................................................................................................................................................................................................................................................................................................................................................TCTGGGGTGCAGTGGAGTGGATC.............................................................................................2314.007.00--4.00-------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................TCTGGGGTGCAGTGGAGTGGGGCCT...........................................................................................253.000.003.00---------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................CCAAGCCCTGGCTCCCTGCAGT.................................................223.000.00----------------------------------------------------1.00-1.001.00--
..................................................................................................................................................................................................................................................................................................................................................................TGGGGTGCAGTGGAGTGGGGCCA...........................................................................................233.000.003.00---------------------------------------------------------
...............................................................................................................CAGGGAAGAGCCCTGCGCC..................................................................................................................................................................................................................................................................................................................................................193.000.00----------------------------1.00------------1.00----1.00-----------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACTGTCACTACCCCGAAGGACGT.........262.000.00--------2.00-------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................CCCCAAGCCCTGGCTCCCTGCAG..................................................2312.002.00-------------1.00-------------------------------1.00------------
.................................................................................................................................................................................................................................................................................................................................................................CTGGGGTGCAGTGGAGTGGG...............................................................................................2012.002.00-----------2.00----------------------------------------------
...............................................................................................................CAGGGAAGAGCCCTGCG....................................................................................................................................................................................................................................................................................................................................................172.000.00-----2.00----------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................GTCTGGGGTGCAGTGGAGTGGGGC.............................................................................................2412.002.001.00-----------------------1.00---------------------------------
...CCCCACCGCCTGCCCCCGCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00-----------------1.00----------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCACTACCCCGAAGGACGAGTGTG....2611.001.00------------------------------------------------1.00---------
................................................................................................................................................................................................................................................................................................................................................................TCTGGGGTGCAGTGGAGTGGGTC.............................................................................................231.000.001.00---------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCCGAAGGACGAGTGT.....1811.001.00---------------------------------------------------1.00------
................................................................................................................................................................................................................................................................................................GGAGGGCACTGTGGCTCTG.................................................................................................................................................................191.000.00------------------1.00---------------------------------------
...............................................................................................................................................................................................................................................................................................CGGAGGGCACTGTGGCCTCTCAGG.............................................................................................................................................................2411.001.00----------1.00-----------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................TGCAGTGGAGTGGGGCCCCTC........................................................................................2111.001.00--------------------------------------------1.00-------------
................................................................................................................................................................................................................................................................................................................................................................TCTGGGGTGCAGTGGAGTGGGGC.............................................................................................2311.001.001.00---------------------------------------------------------
......CACCGCCTGCCCCCGCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00--------------------------------------1.00-------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGACGAGTGTGAGGA1811.001.00------1.00---------------------------------------------------
..............................................................................................................................................................CACCGTGCACCTGTGGGACCCAGCACTGAGTGGA....................................................................................................................................................................................................................................................................................3411.001.00-------------------------------1.00--------------------------
.............................................................................................................................................................................................................................................................................................CTCGGAGGGCACTGTGGCCTCTCAG..............................................................................................................................................................2511.001.00--------------1.00-------------------------------------------
........................................................................................................................................................................................................CATGCTCCCGGGTCCCAGT.........................................................................................................................................................................................................................................................1911.001.00-------------------------------------------1.00--------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACACTGTCACTACCCCGAAGA.............2511.001.00---------------------1.00------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACACTGTCACTACCCCG.................2111.001.00-------------------------1.00--------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACTGTCACTACCCCGAAGAA............231.000.00--------------------------1.00-------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACCCCGAAGGACGTG........181.000.00-----------------------1.00----------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGGAGCTCAGTGGG...................................171.000.00----------1.00-----------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................TCTGGGGTGCAGTGGAGTGGGGCT............................................................................................2411.001.00---------------------------------------1.00------------------
..................................................................................................................................................................................CAGCACTGAGTGGAGCCG................................................................................................................................................................................................................................................................................1811.001.00------------1.00---------------------------------------------
..................................................GTAAGAGACTGGCAGCTG................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00------1.00---------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................CCAAGCCCTGGCTCCCTGCAGTAT...............................................241.000.00--------------------------------------------------1.00-------
............................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGCCCTGGCTCCCTGCC...................................................211.000.00-----------------------------1.00----------------------------
.........................................CCATCCACGGTAAGAGACTGGCAGGT.................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00-------1.00--------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACACTGTCACTACCCCGAAG..............2411.001.00--------------------------------1.00-------------------------
........................................................................................................................................................................................................................AGTGGGCCAAGCAGGGGC..........................................................................................................................................................................................................................................1811.001.00----1.00-----------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................CTGGGGTGCAGTGGAGTGGGGC.............................................................................................2211.001.00-------------------------------------1.00--------------------
...................................................................................................................................................................................................................................................................................CTCCCTGTCACTCGGAGGGCACTGTGGC.....................................................................................................................................................................2811.001.00----1.00-----------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................TCTGGGGTGCAGTGGAGTGGGGCAAA..........................................................................................2611.001.00--------------------1.00-------------------------------------
...........................................................................................................................................................................TGGGACCCAGCACTGAGTGGA....................................................................................................................................................................................................................................................................................2111.001.00---1.00------------------------------------------------------
...............................................................................................................................................................................................................CCGGGTCCCAGTGGGGGCT..................................................................................................................................................................................................................................................191.000.00----------------------------------1.00-----------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................CATGAGCCCCAAGCCCTGGCTCCC.......................................................2411.001.00---------------------------1.00------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACACTGTCACTACCCCGAAG..............2211.001.00----------------------1.00-----------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCACTACCCCGAAGGACG..........2011.001.00---------------1.00------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................CTGGGGTGCAGTGGAGTGGGGCC............................................................................................2311.001.00---------------------------------1.00------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................AGCCCCAAGCCCTGGCTCCATA.....................................................221.000.00------------------------------------------1.00---------------
..........................................................................................................................................................................................AGTGGAGCCGGGGTCATGC.......................................................................................................................................................................................................................................................................1911.001.00-------1.00--------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGACGAGTGTGAGGACTCC2211.001.00---1.00------------------------------------------------------
.......................................................................................................................................................................................................................................................................................CTGTCACTCGGAGGGCAC...........................................................................................................................................................................1811.001.00------------------------------------1.00---------------------
...................................................................................................................................................................................................................................................................................................GGGCACTGTGGCCTCTCAGGC............................................................................................................................................................2111.001.00----1.00-----------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................AGTGGAGTGGGGCCCCTCATTGC...................................................................................2311.001.00-------------------1.00--------------------------------------
...............................................................................................GGTCATACCTGGCACAG....................................................................................................................................................................................................................................................................................................................................................................171.000.00----------------1.00-----------------------------------------
......CACCGCCTGCCCCCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1720.500.50---0.50------------------------------------------------------
..................................................GTAAGAGACTGGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................1630.330.33---------------------------------------------------------0.33
..................................................................................................................................................................................................................................................................................................................................................................TGGGGTGCAGTGGAGTGGG...............................................................................................1930.330.33--------------------------------------------------------0.33-

Antisense strand
CCACCCCACCGCCTGCCCCCGCCCCCGCCCCCGCCCCCGTTCCATCCACGGTAAGAGACTGGCAGCTGGCCAGTGCCAGCCTCGGTGTCTGCAGAGGTCATACCTGGCACTCAGGGAAGAGCCCTGGGTCTCCTGAGGCCCTGTGCTCTCGCGGTCAGCACCGTGCACCTGTGGGACCCAGCACTGAGTGGAGCCGGGGTCATGCTCCCGGGTCCCAGTGGGCCAAGCAGGGGCCAGGGGAAGGGGAGGACAGCCAGGGCCTCTGTGCTCACAGGCTCCCTGTCACTCGGAGGGCACTGTGGCCTCTCAGGCAGGCGTGAGGGCAAGCTGAGGGTGTGTGGCATGGAGGCTGTCTGGGGTGCAGTGGAGTGGGGCCCCTCATTGCCCAGCATGAGCCCCAAGCCCTGGCTCCCTGCAGGGGGAGCTCAGTGTGAACACTGTCACTACCCCGAAGGACGAGTGTGAGGA
.............................................................................................................................................................................................................................................................................................................................................................((((..(((((.(((.((..((((((...(((.(((...))))))))))))..))))))))))..))))..................................................
...........................................................................................................................................................................................................................................................................................................................................................348...................................................................418................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR040019(GSM532904)
G701T. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR040011(GSM532896)
G529T. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR038858(GSM458541)
MEL202. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR553574(SRX182780)
source: Heart. (Heart)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
........CCGCCTGCCCCCGCCCCCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 201.000.00-----------------------------------1.00----------------------
........CCGCCTGCCCCCGCCCCCGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................... 211.000.00---------1.00------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................CCAGCATGAGCCCCACC.................................................................. 171.000.00---1.00------------------------------------------------------
...............CCCCCGCCCCCGCCCCCGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................. 201.000.00---------1.00------------------------------------------------
..........................................................................................................................................................................................................................................................CAGCCAGGGCCTCTGTCCC....................................................................................................................................................................................................... 191.000.00----------------------------------------1.00-----------------
................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGGAGCTCAGTGTGAACTCC............................. 231.000.00-----------------------------------------------------1.00----
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTACCCCGAAGGGGT.......... 191.000.00-----------------------------------------------1.00----------