ID: uc002luy.2_intron_23_0_chr19_2127201_r.5p
GENE: (7)
chr19:2128889-2129138-


(5)
AGO2.ip
(1)
B-CELL
(1)
BRAIN
(3)
BREAST
(14)
CELL-LINE
(6)
CERVIX
(2)
HEART
(1)
HELA
(2)
LIVER
(6)
OTHER
(12)
SKIN
(1)
XRN.ip

Sense strand
CCGCGGCTGGGCAAGAAGCTGATCGAGCCCCTCACCAATCTCATCCACAGGTGAGTGCAGGCCATGCGCGGTGGGGGCGGGCCGGCTCCACGGGGTGCAGTGTCGGAGCGGCGGGGGCGGGCCGGCTCCACGGGGTGCAGTGTCGGAGCGGCGGGGGCGGGCCGGCTCCACGGGGTGCAGTGTCGGAGCGGCGGGGGCGGGCCGGCTCCACGGGGTGCAGTGTTGGAGCGGCGGGGGCGGGCCGGCTCCA
.....................................................................................................((((...))))....((.((((.(((((.((...(((.........))).))))))).)))).))....................................................................................
....................................................................................................101..............................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925PAZD5GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784GSM532888(GSM532888)
G761T. (cervix)
SRR040029(GSM532914)
G026T. (cervix)
SRR189787SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR040025(GSM532910)
G613T. (cervix)
SRR390723(GSM850202)
total small RNA. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR343334SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR343335SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040009(GSM532894)
G727T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................................................................................................................................................GAGCGGCGGGGGCGG..........150892.00892.00320.00116.00108.00128.00108.0052.0060.00-----------------------------------------
................................................................................................................................................................................................................................GGAGCGGCGGGGGCGG..........160132.00132.0048.0024.0020.008.0016.008.004.00--------------4.00--------------------------
................................................................................................................................................GGAGCGGCGGGGGCG...........................................................................................15020.0020.00-4.008.00--4.00--------------4.00---------------------------
................................................................................................................................................................................................................................GGAGCGGCGGGGGCGT..........1608.0020.00---------4.00-------4.00------------------------------
................................................................................................................................................................................................................................GGAGCGGCGGGGGCGGAGC.......1908.00132.00-------4.00-------4.00--------------------------------
.................................................................................................................................................................................................................................GAGCGGCGGGGGCGGGCGG......198.000.004.00-------4.00---------------------------------------
................................................................................................................................................GGAGCGGCGGGGGCGGAC........................................................................................1804.00132.00-------------4.00----------------------------------
..................................................................................................................................................................................................................................AGCGGCGGGGGCGGGCGGT.....194.000.00-------------------4.00----------------------------
.................................................................................................................................................................................................................................GAGCGGCGGGGGCGGGCCGGGCG..234.000.00-------4.00----------------------------------------
.........................................................................................................................................................................................GAGCGGCGGGGGCGGGCCCGGG...........................................224.000.00--------4.00---------------------------------------
................................................................................................................................................................................................................................GGAGCGGCGGGGGCGTCG........1804.0020.00------------4.00-----------------------------------
.........................................................................................................GAGCGGCGGGGGCGGGCCGC.............................................................................................................................204.000.004.00-----------------------------------------------
................................................................................................................................................................................................................................GGAGCGGCGGGGGCGGGCCGCG....224.000.00------------------4.00-----------------------------
................................................................................................................................................................................................................................GGAGCGGCGGGGGCGGAA........1804.00132.00-4.00----------------------------------------------
...........................CCCCTCACCAATCTCATCCACAG........................................................................................................................................................................................................2314.004.00-------------------------2.00--2.00-------------------
.................................................................................................................................................GAGCGGCGGGGGCGGAGCG......................................................................................1904.00892.00-----------4.00------------------------------------
.................................................................................................................................................................................................................................GAGCGGCGGGGGCGGAA........1704.00892.00-----------------------4.00------------------------
..........................................................................................................................................................................................AGCGGCGGGGGCGGGCCGGG............................................204.000.00-------4.00----------------------------------------
..................................................................................................................................................................................................................................AGCGGCGGGGGCGGGCCGC.....194.000.00--4.00---------------------------------------------
................................................................................................................................................................................................................................GGAGCGGCGGGGGCGTG.........1704.0020.00-------4.00----------------------------------------
.................................................................................................................................................................................................................................GAGCGGCGGGGGCGGGTC.......184.000.00--------4.00---------------------------------------
..........................................................................................................AGCGGCGGGGGCGGGCCGCGG...........................................................................................................................214.000.00---4.00--------------------------------------------
.......................................................................................................................................................................................................................................CGGGGGCGGGCCGGCA...164.000.00----------4.00-------------------------------------
........................................................................................................................................................................................GGAGCGGCGGGGGCGGGCTACG............................................224.000.00-------4.00----------------------------------------
.CGCGGCTGGGCAAGACG........................................................................................................................................................................................................................................172.000.00--------------------------2.00---------------------
.CGCGGCTGGGCAAGAAGCT......................................................................................................................................................................................................................................1912.002.00------------------------------1.001.00----------------
...............................................................................................................................................................................................................................TGGAGCGGCGGGGGCCGG.........181.000.00--------------------------------------1.00---------
.........GGCAAGAAGCTGATCGAGC..............................................................................................................................................................................................................................1911.001.00------------------------1.00-----------------------
.................GCTGATCGAGCCCCTCACCAATCTCATC.............................................................................................................................................................................................................2811.001.00-------------------------------------1.00----------
....GGCTGGGCAAGAAGCTGATCGAG...............................................................................................................................................................................................................................2311.001.00-----------------------------------1.00------------
.....GCTGGGCAAGAAGCTGCT...................................................................................................................................................................................................................................181.000.00------------------------1.00-----------------------
.....GCTGGGCAAGAAGCTGCTAT.................................................................................................................................................................................................................................201.000.00------------------------1.00-----------------------
............AAGAAGCTGATCGAGCCCCTCACC......................................................................................................................................................................................................................2411.001.00-----------------------------1.00------------------
.....GCTGGGCAAGAAGCTGATCGAGC..............................................................................................................................................................................................................................2311.001.00---------------------------------1.00--------------
...............................................................................................................................................................................................................CCACGGGGTGCAGTGTTGGTGAA....................231.000.00---------------------------1.00--------------------
......CTGGGCAAGAAGCTGATCGAGC..............................................................................................................................................................................................................................2211.001.00----------------------------------1.00-------------
..................................................................................................................................................................................................................CGGGGTGCAGTGTTGGTGA.....................191.000.00---------------------------1.00--------------------
.................................ACCAATCTCATCCACAG........................................................................................................................................................................................................1740.750.75---------------------------------------0.75--------
................................CACCAATCTCATCCACAG........................................................................................................................................................................................................1820.500.50----------------------------------------0.50-------
............................................................................................................................................................................GGGTGCAGTGTCGGAGCGGCCTA.......................................................2390.330.33-------------------------------------------0.33----
................................CACCAATCTCATCCAC..........................................................................................................................................................................................................1630.330.33-----------------------------------------0.33------
.....................................................................................................GTCGGAGCGGCGGGGG.....................................................................................................................................1690.330.33--------------------------------------------0.33---
............................................................................................................................................................................GGGTGCAGTGTCGGAGCGGC..........................................................2090.330.33---------------------------------------------0.33--
.............................................................................................................................................................................GGTGCAGTGTCGGAGCGGCG.........................................................2090.330.33----------------------------------------------0.33-
.............................................................................................................................................GTCGGAGCGGCGGGGGGGGC.........................................................................................2090.330.33------------------------------------------0.33-----
.................................ACCAATCTCATCCAC..........................................................................................................................................................................................................1570.140.14-----------------------------------------------0.14

Antisense strand
CCGCGGCTGGGCAAGAAGCTGATCGAGCCCCTCACCAATCTCATCCACAGGTGAGTGCAGGCCATGCGCGGTGGGGGCGGGCCGGCTCCACGGGGTGCAGTGTCGGAGCGGCGGGGGCGGGCCGGCTCCACGGGGTGCAGTGTCGGAGCGGCGGGGGCGGGCCGGCTCCACGGGGTGCAGTGTCGGAGCGGCGGGGGCGGGCCGGCTCCACGGGGTGCAGTGTTGGAGCGGCGGGGGCGGGCCGGCTCCA
.....................................................................................................((((...))))....((.((((.(((((.((...(((.........))).))))))).)))).))....................................................................................
....................................................................................................101..............................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925PAZD5GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784GSM532888(GSM532888)
G761T. (cervix)
SRR040029(GSM532914)
G026T. (cervix)
SRR189787SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR040025(GSM532910)
G613T. (cervix)
SRR390723(GSM850202)
total small RNA. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR343334SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR343335SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040009(GSM532894)
G727T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................................................................................................................................................................................................CGGCGGGGGCGGGCCGG..... 178.000.00----------------4.00-----4.00-------------------------
.................................................................................CCGGCTCCACGGGGTTG........................................................................................................................................................ 174.000.00--------------4.00---------------------------------
.......................................................................................................................................................................................CGGAGCGGCGGGGGCTG.................................................. 173.000.00---------3.00--------------------------------------
.................................ACCAATCTCATCCACATAA...................................................................................................................................................................................................... 1971.000.00--------------------------------1.00---------------