ID: uc002lul.3_intron_3_0_chr19_1978511_f
GENE: (4)
chr19:1978461-1978650+


(2)
AGO2.ip
(1)
AGO3.ip
(2)
B-CELL
(2)
BRAIN
(9)
BREAST
(20)
CELL-LINE
(5)
CERVIX
(4)
HEART
(1)
HELA
(2)
LIVER
(3)
OTHER
(1)
RRP40.ip
(22)
SKIN

Sense strand
CCCGCAGCTGCACCTGGAGTACCGGTTCTACAAGCAGCTCAGCGCCACAGGTACCGGGCGGCCCGCGGGTGGGGCGGGGGCTGCGCAGGGGCAGGGAGGGGGCTGCCGCCGCACGCCCGTGCGTCTGTCCTCCGCCGCAGAGGGCGTCCCTCAGGTCTACTACTTCGGTCCGTGCGGGAAGTACAACGCC
.....................................................................((.(((((((((.(((((.((((.....((.((...)).))....)))).)))))..)))).))))).))...................................................
................................................................65.........................................................................140................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
TAX577740(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
TAX577579(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040040(GSM532925)
G612N. (cervix)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
GSM532929(GSM532929)
G702N. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM956925PAZD5SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR038855(GSM458538)
D10. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR040032(GSM532917)
G603N. (cervix)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR038862(GSM458545)
MM472. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040031(GSM532916)
G013T. (cervix)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................................................................CGTGCGTCTGTCCTCCGCCGCAG..................................................23114.0014.00--3.00--2.00-----1.00-1.00---2.00---------1.00--------1.00------1.00-------------1.001.00----------------
.....................................................................................................................CGTGCGTCTGTCCTCCGCCGCAGA.................................................2418.008.00-1.00-4.00-----------------------------1.00-------------------1.00--------1.00------------
.....................................................................................................................CGTGCGTCTGTCCTCCGCCGCAGT.................................................2417.0014.00--3.00--1.00-------1.00-------------------------------1.00----1.00------------------------
.....................................................................TGGGGCGGGGGCTGCGCAGGGG...................................................................................................2213.003.00---2.001.00----------------------------------------------------------------------
.......................................................................GGGCGGGGGCTGCGCAGGGGCATT...............................................................................................243.000.00----3.00----------------------------------------------------------------------
....................................................................................................................CCGTGCGTCTGTCCTCCGCCGCAGT.................................................253.000.00---------3.00-----------------------------------------------------------------
.................................GCAGCTCAGCGCCACAG............................................................................................................................................1712.002.00--------------------------------1.00--------------1.00---------------------------
.....................................................................................................................CGTGCGTCTGTCCTCCGCCGCAT..................................................2312.002.00--------2.00------------------------------------------------------------------
.....................................................................................................................CGTGCGTCTGTCCTCCGCCGCA...................................................2212.002.00-------------------------1.00--------------------1.00----------------------------
.....................................................................TGGGGCGGGGGCTGCGCAGGGGCTT................................................................................................251.000.00--------------------------1.00------------------------------------------------
...........................................................................................................GCCGCACGCCCGTGCGTCTGTCCTCCGC.......................................................2811.001.00---------------------1.00-----------------------------------------------------
...........................................................................................................................................................TCTACTACTTCGGTCCGTGCGG.............2211.001.00----------------1.00----------------------------------------------------------
.............................ACAAGCAGCTCAGCGCCACAGA...........................................................................................................................................221.000.00-------------------------------------------------------1.00-------------------
...............................................................................................................................................................CTACTTCGGTCCGTGCGGGAAGT........2311.001.00------------------------------------------------1.00--------------------------
.....................................................................................................................CGTGCGTCTGTCCTCCGCCGCAGTT................................................2511.0014.00--------------------------------------1.00------------------------------------
.....AGCTGCACCTGGAGTACC.......................................................................................................................................................................1811.001.00------1.00--------------------------------------------------------------------
...........................CTACAAGCAGCTCAGCGCCAC..............................................................................................................................................2111.001.00--------------------------------------------1.00------------------------------
..............................................................CCGCGGGTGGGGCGGGGGCT............................................................................................................2011.001.00----------------------1.00----------------------------------------------------
....................................................................................................................CCGTGCGTCTGTCCTCCGCCGCA...................................................2311.001.00-------------------------------------------------1.00-------------------------
..............................CAAGCAGCTCAGCGCCAC..............................................................................................................................................1811.001.00------------------------------------------------------------1.00--------------
.........................TTCTACAAGCAGCTCATC...................................................................................................................................................181.000.00-------------------------------1.00-------------------------------------------
......................................................................................................................................................TCAGGTCTACTACTTCGGTCCGTGCG..............2611.001.00---------------------------------------1.00-----------------------------------
...........................................................................................................................................................................GTGCGGGAAGTACAAGGC.181.000.00------------------------1.00--------------------------------------------------
........................GTTCTACAAGCAGCTCAG....................................................................................................................................................1821.001.00----------------1.00----------------------------------------------------------
.....................................................................................................................CGTGCGTCTGTCCTCCGCCGCGGT.................................................241.000.00-------------------------------------1.00-------------------------------------
..............................CAAGCAGCTCAGCGCCACC.............................................................................................................................................1911.001.00----------------------------------1.00----------------------------------------
..................................................................................................................GCCCGTGCGTCTGTCGGCC.........................................................191.000.00----------------------------------------1.00----------------------------------
................................................................GCGGGTGGGGCGGGGGCTCGCC........................................................................................................221.000.00----------1.00----------------------------------------------------------------
....................................................................................................................CCGTGCGTCTGTCCTCCGCCGCAT..................................................2411.001.00------------------------------------------1.00--------------------------------
.......................................................................................................................................................CAGGTCTACTACTTCGGTCCGTGCG..............2511.001.00------1.00--------------------------------------------------------------------
..............TGGAGTACCGGTTCTACAAGCA..........................................................................................................................................................2211.001.00--------------------------------------------------------1.00------------------
.................................................................................................................................................................ACTTCGGTCCGTGCGGGAAGTAC......2311.001.00------------------------------------------------------1.00--------------------
................................................................GCGGGTGGGGCGGGGGCTCTCC........................................................................................................221.000.00----------1.00----------------------------------------------------------------
...................................AGCTCAGCGCCACAGAG..........................................................................................................................................171.000.00---------------------------------------------------1.00-----------------------
..............TGGAGTACCGGTTCTACAAGCAGCTCAG....................................................................................................................................................2811.001.00-----------------------1.00---------------------------------------------------
..................................................................................................................................................TCCCTCAGGTCTACTACTTC........................2011.001.00-------------------------------------------------------------1.00-------------
............................................................................................................................................AGGGCGTCCCTCAGGTCT................................1820.500.50------------------------------------------------------------------0.50--------
...................TACCGGTTCTACAAGC...........................................................................................................................................................1620.500.50----------------------------------------------------------------0.50----------
.....................CCGGTTCTACAAGCAGCTCAGCG..................................................................................................................................................2320.500.50-----------------------------------------------------------------0.50---------
.............................................................................GGGCTGCGCAGGGGC..................................................................................................1570.140.14--------------------0.14------------------------------------------------------
.................................................................CGGGTGGGGCGGGGGC.............................................................................................................1680.120.120.12--------------------------------------------------------------------------

Antisense strand
CCCGCAGCTGCACCTGGAGTACCGGTTCTACAAGCAGCTCAGCGCCACAGGTACCGGGCGGCCCGCGGGTGGGGCGGGGGCTGCGCAGGGGCAGGGAGGGGGCTGCCGCCGCACGCCCGTGCGTCTGTCCTCCGCCGCAGAGGGCGTCCCTCAGGTCTACTACTTCGGTCCGTGCGGGAAGTACAACGCC
.....................................................................((.(((((((((.(((((.((((.....((.((...)).))....)))).)))))..)))).))))).))...................................................
................................................................65.........................................................................140................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
TAX577740(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
TAX577579(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040040(GSM532925)
G612N. (cervix)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
GSM532929(GSM532929)
G702N. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM956925PAZD5SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR038855(GSM458538)
D10. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR040032(GSM532917)
G603N. (cervix)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR038862(GSM458545)
MM472. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040031(GSM532916)
G013T. (cervix)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................CCCGCGGGTGGGGCGGGGGG............................................................................................................. 2029.000.0019.0010.00-------------------------------------------------------------------------
...............................................................CGCGGGTGGGGCGGGCGCG............................................................................................................ 196.000.00--------1.00---2.00----------------1.00-----------1.00----------1.00----------------------
.............................................................CCCGCGGGTGGGGCGGGGGGGG........................................................................................................... 226.000.002.004.00-------------------------------------------------------------------------
.............................................................CCCGCGGGTGGGGCGGGGGGGGG.......................................................................................................... 232.000.00-2.00-------------------------------------------------------------------------
...............................................................CGCGGGTGGGGCGGGGGCG............................................................................................................ 192.000.00-----------1.00---1.00-----------------------------------------------------------
...............................................................CGCGGGTGGGGCGGGGGCGC........................................................................................................... 202.000.00------1.00-----------------------1.00--------------------------------------------
..........................................................................................................................................................ACGGACCGAAGTAGTAGAC................. 1911.001.00------------------1.00--------------------------------------------------------
................GAGTACCGGTTCTACA.............................................................................................................................................................. 161.000.00---------------------------------------------------------------1.00-----------
.............................................................CCCGCGGGTGGGGCGGGGGGA............................................................................................................ 211.000.00-1.00-------------------------------------------------------------------------
....................................................................................................................................................GGACCGAAGTAGTAGACCTGAGG................... 2311.001.00----------------------------1.00----------------------------------------------
...............................................................CGCGGGTGGGGCGGGCG.............................................................................................................. 171.000.00---------------1.00-----------------------------------------------------------
.........................................................................................................................CGTCTGTCCTCCGCCGCG................................................... 181.000.00-------1.00-------------------------------------------------------------------
.......................GGTTCTACAAGCAGCTAGT.................................................................................................................................................... 191.000.00-----------------------------------1.00---------------------------------------
.............................................................CCCGCGGGTGGGGCGGGGGGG............................................................................................................ 211.000.001.00--------------------------------------------------------------------------
.............................................................CCCGCGGGTGGGGCGGGGGG............................................................................................................. 201.000.00-1.00-------------------------------------------------------------------------
..........................................................................................................................AGGGACGCCCTCTGCGGCGGAGGACAGAC....................................... 2911.001.00-------------------1.00-------------------------------------------------------
..................................................................................................................................................GAAGTAGTAGACCTGAGGGA........................ 2011.001.00--------------1.00------------------------------------------------------------
...............................................................CGCGGGTGGGGCGGGCGC............................................................................................................. 181.000.00--------------------1.00------------------------------------------------------
..........................................................................................................................................................CGGACCGAAGTAGTAGAC.................. 1811.001.00------------------1.00--------------------------------------------------------
...........................................................................................................................TCTGCGGCGGAGGACAGA................................................. 1811.001.00-------1.00-------------------------------------------------------------------
...........................................................................................................................CTGCGGCGGAGGACAGA.................................................. 1711.001.00-------1.00-------------------------------------------------------------------
.............................................................................................................................TGTCCTCCGCCGCAGATA............................................... 181.000.00--------------1.00------------------------------------------------------------
..................GTACCGGTTCTACAAGCAGCTCCT.................................................................................................................................................... 241.000.00-----------------------------------------------------------1.00---------------
...............................................................CGCGGGTGGGGCGGGGCGCG........................................................................................................... 200.670.00---------------------0.110.11---------------------------------------------0.22-0.11---0.11
................................................................................................................................................GTAGTAGACCTGAGGGACG........................... 1920.500.50-------------------------------------------------------------------0.50-------
....................................................................................................................................................AGTAGTAGACCTGAGG.......................... 1620.500.50-------------------0.50-------------------------------------------------------
........................................................................................................CGGGCGTGCGGCGGC....................................................................... 1540.250.25-----0.25---------------------------------------------------------------------
...............................................................CGCGGGTGGGGCGGGGCGC............................................................................................................ 190.220.00------------------------------------------------------------------------0.110.11-
...............................................................CCCCGCCCCACCCGCG............................................................................................................... 1690.110.11---------------------------------------------------------------------0.11-----
...............................................................CGCGGGTGGGGCGGGGCGCC........................................................................................................... 200.110.00-----------------------------------------------------------------------0.11---