ID: uc002luc.2_intron_0_0_chr19_1854760_r.5p
GENE: (1)
chr19:1862840-1863089-


(1)
AGO1.ip
(4)
AGO2.ip
(9)
B-CELL
(2)
BRAIN
(17)
BREAST
(26)
CELL-LINE
(10)
CERVIX
(3)
HEART
(3)
HELA
(6)
LIVER
(2)
OTHER
(30)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
AGCCTACTACAAGTCCTCGCACCTAAAGTCGCACCTGCGGACGCACACAGGTGAGTGCAGCCGCGATCCCGGCCCTTGCGGGGGCGGCCGCCTGAGACCCCTCCCCCGCCAGGACCCCGAAACTGCGTGGCGCGTGGGGGGCGGGGAGGGGGGCGCGCCCGGGCCGCCGCCGCGCCGGCCGGCAGGGCGGGGCCTCGGTGGGTGGGGCGCGCGCGGGGGGCGTGGCGGCCACGCGGTCGGGCGGCGAGCG
...............................................................................................................................((((((...((.(((((...(((.......)))...))))).)))))))).........................................................................
..............................................................................................................................127..................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
TAX577743(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
TAX577741(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR040035(GSM532920)
G001T. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
GSM532889(GSM532889)
G576N. (cervix)
SRR029124(GSM416753)
HeLa. (hela)
TAX577588(Rovira)
total RNA. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR040041(GSM532926)
G612T. (cervix)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR040009(GSM532894)
G727T. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR343335SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR191440(GSM715550)
26genomic small RNA (size selected RNA from t. (breast)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
TAX577744(Rovira)
total RNA. (breast)
............................................................................................................................................................GCCCGGGCCGCCGCCGGGCG..........................................................................20101.000.0041.0060.00-------------------------------------------------------------------------------------------------------------
...................................................................................................................................................GGGGGGCGCGCCCGGCTGA....................................................................................1915.000.009.001.00----3.001.00-----------------------------------------------------------------1.00-------------------------------------
.......................................................................................................................................................................................................................................CGCGGTCGGGCGGCGGC..179.000.00--3.00-------1.00--------2.00--------------1.00----------1.00------1.00----------------------------------------------------------
.......................................................................................................................................................................................................................................CGCGGTCGGGCGGCGGCGG198.000.00--1.00----1.00--2.00-------1.00----------------------------1.001.00---------------1.00----------------------------------------------
.................................................................................................................................................GAGGGGGGCGCGCCCGGC.......................................................................................186.000.00--2.00---------1.00--------2.00-----------------------------------------------1.00-----------------------------------------
.......................................................................................................................................................................................................................................CGCGGTCGGGCGGCGGCG.184.000.00----------------------------1.00---------------1.00------------1.00-----1.00-----------------------------------------------
....................................................................................................................................................GGGGGCGCGCCCGGGGGGG...................................................................................194.000.00-----------------------------------1.00----1.00-------------------1.00--------------1.00-----------------------------------
......................................................................................................................................................................................................................................ACGCGGTCGGGCGGCGAGCG2014.004.00----------------------2.00------2.00---------------------------------------------------------------------------------
..................................................................................................................................................AGGGGGGCGCGCCCGGC.......................................................................................1723.501.000.501.50--0.50--------------------------------0.50---------------------------------------------------0.50---------------------
.................................................................................................................................................GAGGGGGGCGCGCCCGGCT......................................................................................193.000.00-----------------1.00---------------------1.00----------------1.00------------------------------------------------------
.................................................................................................................................................GAGGGGGGCGCGCCCGGCTG.....................................................................................203.000.00-------------------------------------------------------1.00----------------------1.00---------1.00----------------------
...................................................................................................................................................................CCGCCGCCGCGCCGGCGGGA...................................................................203.000.002.001.00-------------------------------------------------------------------------------------------------------------
...................................................................................................................................................GGGGGGCGCGCCCGGCT......................................................................................173.000.001.00---------------------------------------------------------1.00---------------------1.00------------------------------
....................................................................................................................................................................CGCCGCCGCGCCGGCGG.....................................................................172.000.00--------------------2.00------------------------------------------------------------------------------------------
..................................CTGCGGACGCACACAGGGGA....................................................................................................................................................................................................202.000.00--------------2.00------------------------------------------------------------------------------------------------
........................AAAGTCGCACCTGCGGACGCACACAGG.......................................................................................................................................................................................................2712.002.00----1.00--------------------------------------------------------------1.00-------------------------------------------
............................................................................................................................................................GCCCGGGCCGCCGCCGGCG...........................................................................192.000.001.001.00-------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................CCCGGGCCGCCGCCGGGC...........................................................................182.000.001.001.00-------------------------------------------------------------------------------------------------------------
..................................................................................................................................................AGGGGGGCGCGCCCGGCTGA....................................................................................2022.001.001.500.50-------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCCGCG.........................192.000.002.00--------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................CGCGGTCGGGCGGCGG...162.000.00------------1.00-----------------------1.00--------------------------------------------------------------------------
...................................................................................................................................................GGGGGGCGCGCCCGGCTG.....................................................................................182.000.001.001.00-------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................GCGGTCGGGCGGCGA...1531.671.67-------0.33--------------------------0.33------------------------------------------------------0.33---------0.33-0.33---------
............................................................................................................................................................GCCCGGGCCGCCGCCGGACG..........................................................................201.000.00-1.00-------------------------------------------------------------------------------------------------------------
.......................TAAAGTCGCACCTGCGGACGCACACA.........................................................................................................................................................................................................2611.001.00-------------------------------1.00-------------------------------------------------------------------------------
..................................................................................................................................................................................................TCGGTGGGTGGGGCGTA.......................................171.000.00------------1.00--------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................GCGGTCGGGCGGCGAC..1631.001.67-------0.33----------------------------0.33---------------------------------------------------------------0.33----------
......................................................................................................................................................................CCGCCGCGCCGGCCGACGG.................................................................191.000.00-----1.00---------------------------------------------------------------------------------------------------------
...................................................................................................................................GCGTGGGGGGCGGGGTTG.....................................................................................................181.000.00---------------------------------1.00-----------------------------------------------------------------------------
....................................GCGGACGCACACAGGGGAA...................................................................................................................................................................................................191.000.00-------------------------------------------------------------1.00-------------------------------------------------
.......................................................................................................................................................................CGCCGCGCCGGCCGGCGGGT...............................................................201.000.00---------------------------------1.00-----------------------------------------------------------------------------
......................................................................................................................................TGGGGGGCGGGGAGGGGGGC................................................................................................2011.001.00-------------1.00-------------------------------------------------------------------------------------------------
..................................................................................................................................................................GCCGCCGCCGCGCCGGCGGCG...................................................................211.000.00-1.00-------------------------------------------------------------------------------------------------------------
.....................CCTAAAGTCGCACCTGCGGA.................................................................................................................................................................................................................2011.001.00--------------------------------------------------------------------------1.00------------------------------------
........................AAAGTCGCACCTGCGGACGCAC............................................................................................................................................................................................................2211.001.00----1.00----------------------------------------------------------------------------------------------------------
......................................................................................................................................................................CCGCCGCGCCGGCCGTCTG.................................................................191.000.00-----1.00---------------------------------------------------------------------------------------------------------
....TACTACAAGTCCTCGCACCT..................................................................................................................................................................................................................................2011.001.00--------------------------------------------------------------1.00------------------------------------------------
...................CACCTAAAGTCGCACCTGCGGACG...............................................................................................................................................................................................................2411.001.00----1.00----------------------------------------------------------------------------------------------------------
..CCTACTACAAGTCCTCGCACCTAAAG..............................................................................................................................................................................................................................2611.001.00-----1.00---------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................ACGCGGTCGGGCGGCGAG..1811.001.00----------------------------------------------------------------------------------1.00----------------------------
......................................................................................................................................................................................................................GGGGGGCGTGGCGGCCTGT.................191.000.00----------------------------1.00----------------------------------------------------------------------------------
..................................................................................................................................................................................CCGGCAGGGCGGGGCCTCGGCGGG................................................241.000.00-------------1.00-------------------------------------------------------------------------------------------------
.............................................................................................................................................................CCCGGGCCGCCGCCGGGGA..........................................................................191.000.001.00--------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................CGCGGTCGGGCGGCGGTC.181.000.00------------------1.00--------------------------------------------------------------------------------------------
.................................................................................................................................GCGCGTGGGGGGCGGGTGG......................................................................................................191.000.00-----------------1.00---------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................ACGCGGTCGGGCGGCAAG..181.000.00---------------------------------------------------------------------------------------1.00-----------------------
.....................................................................................................................................................GGGGCGCGCCCGGGCAT....................................................................................171.000.00---------------------------------------------------1.00-----------------------------------------------------------
......................................................................................................CCCCCGCCAGGACCCCGTCCA...............................................................................................................................211.000.00------------------------------------------------------------------------1.00--------------------------------------
..............................................................................................................................................................CCGGGCCGCCGCCGCGCTCC........................................................................201.000.00---------------------------1.00-----------------------------------------------------------------------------------
..CCTACTACAAGTCCTCGCACCTAAA...............................................................................................................................................................................................................................2511.001.00-----1.00---------------------------------------------------------------------------------------------------------
...................................................................................................................................................................CCGCCGCCGCGCCGGCGGGG...................................................................201.000.00-1.00-------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................CGGTCGGGCGGCGAG..1521.001.00-----------------------------------0.50----------------------------------------------------------0.50----------------
....................................................................................................................................................................CGCCGCCGCGCCGGCCGGCTGGG...............................................................231.000.00----------------1.00----------------------------------------------------------------------------------------------
.................................................................................................................................................GAGGGGGGCGCGCCCGGCTGA....................................................................................211.000.00--1.00------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................GGCCACGCGGTCGGGCGGCGAGC.2311.001.00---------------------------1.00-----------------------------------------------------------------------------------
..................................................................................................................................CGCGTGGGGGGCGGGCGGT.....................................................................................................191.000.00------------------------------------------------------1.00--------------------------------------------------------
............................................................................................TGAGACCCCTCCCCCGCCAGATCC......................................................................................................................................241.000.00-------------1.00-------------------------------------------------------------------------------------------------
.........................AAGTCGCACCTGCGGACGCACACA.........................................................................................................................................................................................................2411.001.00----------------------------------------------1.00----------------------------------------------------------------
............................................................................................................................................GCGGGGAGGGGGGCGGCGC...........................................................................................191.000.00--------------------------------------------------1.00------------------------------------------------------------
............................................................................................................................................................GCCCGGGCCGCCGCCGCGCG..........................................................................201.000.00-1.00-------------------------------------------------------------------------------------------------------------
........................AAAGTCGCACCTGCGGACGCACACA.........................................................................................................................................................................................................2511.001.00----1.00----------------------------------------------------------------------------------------------------------
....................................................................CCGGCCCTTGCGGGGGGA....................................................................................................................................................................181.000.001.00--------------------------------------------------------------------------------------------------------------
........ACAAGTCCTCGCACCTAAAGTCGCACCTGC....................................................................................................................................................................................................................3011.001.00------------------------1.00--------------------------------------------------------------------------------------
.......................................................................................................................................GGGGGGCGGGGAGGGGTGT................................................................................................191.000.00------------------------------------------1.00--------------------------------------------------------------------
..................................................................................................................................................AGGGGGGCGCGCCCGGCTG.....................................................................................1921.001.000.500.50-------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................ACGCGGTCGGGCGGCGA...1711.001.00-----------------------------------------------------------------------------------1.00---------------------------
...............................................................................................................................................................................................................CGCGCGCGGGGGGCGTGG.........................1811.001.00-------------------------------1.00-------------------------------------------------------------------------------
.....................CCTAAAGTCGCACCTGCGGACGCACAC..........................................................................................................................................................................................................2711.001.00--------------1.00------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................GCGGCCACGCGGTCGGGCGG......2011.001.00-------------------------------------------------------------------------------------1.00-------------------------
............................................................................................................................................................GCCCGGGCCGCCGCCGGGGG..........................................................................201.000.00-1.00-------------------------------------------------------------------------------------------------------------
..................................................................................................................................................AGGGGGGCGCGCCCGGCT......................................................................................1821.001.00-------------------------------------------------------------------------------------------0.50-0.50-----------------
.....................................................................................................................................................................................................................CGGGGGGCGTGGCGGCGCT..................191.000.00-----------------------1.00---------------------------------------------------------------------------------------
......................................................................................................................................TGGGGGGCGGGGAGGGGGGTG...............................................................................................211.000.00------------------------------------------------------------------1.00--------------------------------------------
..................................................................................................................................................AGGGGGGCGCGCCCGG........................................................................................1621.001.00----------------------------------0.50-------------------------------------------------------0.50--------------------
.................................................................................................................................................................................................CTCGGTGGGTGGGGCGCGCGC....................................2111.001.00--------------------------1.00------------------------------------------------------------------------------------
..................................................................................................................................................AGGGGGGCGCGCCCGGCGGA....................................................................................2020.501.000.50--------------------------------------------------------------------------------------------------------------
...............................................................................................................................TGGCGCGTGGGGGGCGGG.........................................................................................................1820.500.50-------------------------------------0.50-------------------------------------------------------------------------
...........................................................................................................................................GGCGGGGAGGGGGGCGCG.............................................................................................1820.500.50--------------------------------------------------------------------------------------------0.50------------------
.....................................................................................................................................................................................................................CGGGGGGCGTGGCGG......................1560.330.33----------------------------------------------------------------------------------------------------------0.170.17---
........................................................................................................................................................................................................................................GCGGTCGGGCGGCGACG.1730.331.67-------------------------------------0.33-------------------------------------------------------------------------
........................................................................................................................................................................................................................................GCGGTCGGGCGGCGATCC1830.331.67-------------------------------------------------------------------------------------------------0.33-------------
........................................................................................................................................................................................................................................GCGGTCGGGCGGCGAA..1630.331.67--------------------------------------------------------------------------------------------------0.33------------
..................................................................................................................................................AGGGGGGCGCGCCCG.........................................................................................1540.250.25-----------------------------------------------------------------------------------------------0.25---------------
........................................................................................................................................GGGGGCGGGGAGGGGGGCG...............................................................................................1940.250.25-0.25-------------------------------------------------------------------------------------------------------------
..........................................................................................................................................GGGCGGGGAGGGGGGCGC..............................................................................................1860.170.17-----------------------------------------------------------------------------------------------0.17---------------
.....................................................................................................................................................................................................................CGGGGGGCGTGGCGGGGA...................1860.170.33---------------------------------------0.17-----------------------------------------------------------------------
..........................................................................................................................................................GCGCCCGGGCCGCCGCC...............................................................................1780.120.120.12--------------------------------------------------------------------------------------------------------------
....................................................................................................................................CGTGGGGGGCGGGGAGG.....................................................................................................1780.120.12------------------------------------------------------------------------------------------------------------0.12--

Antisense strand
AGCCTACTACAAGTCCTCGCACCTAAAGTCGCACCTGCGGACGCACACAGGTGAGTGCAGCCGCGATCCCGGCCCTTGCGGGGGCGGCCGCCTGAGACCCCTCCCCCGCCAGGACCCCGAAACTGCGTGGCGCGTGGGGGGCGGGGAGGGGGGCGCGCCCGGGCCGCCGCCGCGCCGGCCGGCAGGGCGGGGCCTCGGTGGGTGGGGCGCGCGCGGGGGGCGTGGCGGCCACGCGGTCGGGCGGCGAGCG
...............................................................................................................................((((((...((.(((((...(((.......)))...))))).)))))))).........................................................................
..............................................................................................................................127..................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
TAX577743(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
TAX577741(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR040035(GSM532920)
G001T. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
GSM532889(GSM532889)
G576N. (cervix)
SRR029124(GSM416753)
HeLa. (hela)
TAX577588(Rovira)
total RNA. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR040041(GSM532926)
G612T. (cervix)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR040009(GSM532894)
G727T. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR343335SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR191440(GSM715550)
26genomic small RNA (size selected RNA from t. (breast)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
TAX577744(Rovira)
total RNA. (breast)
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGTGGGGG...................... 2259.000.0034.0022.00-------------2.00-----------------------------------------------------------------1.00-----------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGTGGGGGA..................... 2333.000.0021.0011.00-------------1.00-----------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGTGGGGGG..................... 239.000.005.004.00-------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................CGCGCGCGGGGGGCGTGGGGGG..................... 2216.000.002.004.00-------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGTGGGGGC..................... 234.000.001.003.00-------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................GGCGCGCGCGGGGGGCGGC.......................... 193.000.00-------------------------2.00--------------------------------------------------1.00----------------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGTGGGG....................... 213.000.00--------------------------------2.00-----1.00------------------------------------------------------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGTGGG........................ 202.000.00-2.00-------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................GGCGCGCGCGGGGGGCG............................ 172.000.00--------1.00----------------------------------------------------------------------1.00-------------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGTGGGGC...................... 222.000.001.001.00-------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................GGTGGGTGGGGCGCGCCC.................................... 182.000.001.00----------------------1.00---------------------------------------------------------------------------------------
................................................................................................................................................GGAGGGGGGCGCGCCCG......................................................................................... 171.000.00-----------1.00---------------------------------------------------------------------------------------------------
.................................................................................................................................................................GGCCGCCGCCGCGCCGGCGGGT................................................................... 221.000.00----------------1.00----------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGTGGG........................ 201.000.00-------------------------------------------1.00-------------------------------------------------------------------
.................................................................................................................................................................................................................CGCGCGGGGGGCGTGGGCGG..................... 201.000.001.00--------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................CGCGCGCGGGGGGCGTGGAGGG..................... 2211.000.001.00--------------------------------------------------------------------------------------------------------------
................................................................................................................................................GGAGGGGGGCGCGCCCGGG....................................................................................... 191.000.00---1.00-----------------------------------------------------------------------------------------------------------
........................................................................................................................................CGCCCCCCTCCCCGCCCCC............................................................................................... 1941.001.00--------0.25---------------------------------------------------------------------------------------------0.250.250.25------
.............................................................................GCGGGGGCGGCCGCCTGGG.......................................................................................................................................................... 191.000.00---1.00-----------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGTGGGTGA..................... 231.000.001.00--------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................GGCGCGCGCGGGGGGCGGCTC........................ 211.000.00---1.00-----------------------------------------------------------------------------------------------------------
..............CCTCGCACCTAAAGTCGCATGA...................................................................................................................................................................................................................... 221.000.00---1.00-----------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................GGCGGCCACGCGGTCGTTA........ 191.000.00------------------------1.00--------------------------------------------------------------------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGTGGGGGT..................... 231.000.00-1.00-------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................AGGGCGGGGCCTCGGT................................................... 161.000.00--------------------------1.00------------------------------------------------------------------------------------
............................................................................................................................................................GCCCGGGCCGCCGCCGAAG........................................................................... 191.000.00------------------------------------------------------------------------------------1.00--------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGTGGGCG...................... 221.000.00-1.00-------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................GGCGCGCGCGGGGGGCGGCT......................... 201.000.00---1.00-----------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGTGGAGG...................... 221.000.001.00--------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGTGGGGCA..................... 231.000.00-1.00-------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................GGGGCGCGCGCGGGGCCCG............................ 191.000.00-1.00-------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................GGGGCGCGCGCGGGGGGTCT........................... 201.000.00-----------------------------------------1.00---------------------------------------------------------------------
.......................................................................................................................AAACTGCGTGGCGCGTATC................................................................................................................ 191.000.00-----------1.00---------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGTGGGGTA..................... 231.000.001.00--------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................CCGCCGCCGCGCCGGCAGGC................................................................... 201.000.00-----------------------------------------------------------------------------1.00---------------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGTGGGA....................... 211.000.00------------------------------1.00--------------------------------------------------------------------------------
.............................................................................................................................................................................................................GGCGCGCGCGGGGGGCGC........................... 181.000.00-------1.00-------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGTGGTGGA..................... 231.000.00-1.00-------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGGG.......................... 181.000.00--------1.00------------------------------------------------------------------------------------------------------
...................................................................................................................................................................CGGCCGGCGCGGCGGCGG..................................................................... 1811.001.00-----------------------------------------------------------------------1.00---------------------------------------
.............................................................................GCGGGGGCGGCCGCCTAC........................................................................................................................................................... 181.000.00---1.00-----------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGTGGAGC...................... 221.000.001.00--------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGTG.......................... 181.000.00--------------------------------------------------------------------1.00------------------------------------------
................................................................................................................................................................................................................GCGCGCGGGGGGCGTGGCCG...................... 201.000.00-1.00-------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................AGGGCGGGGCCTCGGTCAC................................................ 191.000.00-----------------1.00---------------------------------------------------------------------------------------------
........................................................AGGGCCGGGATCGCGGCTGC.............................................................................................................................................................................. 2011.001.00----------------1.00----------------------------------------------------------------------------------------------
..................................................................................................................................CGCGTGGGGGGCGGGGAGGGGAG................................................................................................. 231.000.00-----------------------------------------------------------------1.00---------------------------------------------
.......................................................................................................................................................................................................................................CGCGGTCGGGCGGCGC... 161.000.00----------------------------------------------------------------------1.00----------------------------------------
.............................................................................................................................................................................................................GGCGCGCGCGGGGGGCGG........................... 181.000.00---------1.00-----------------------------------------------------------------------------------------------------
.............................................................................................................................CGTGGCGCGTGGGGGACC........................................................................................................... 181.000.00-----------1.00---------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................CGCGCGCGGGGGGCGAA.......................... 171.000.00--------1.00------------------------------------------------------------------------------------------------------
................................................................................................................................................GGAGGGGGGCGCGCCCGGGG...................................................................................... 201.000.00---------1.00-----------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................GGCGCGCGCGGGGGGCGTGGGGG...................... 231.000.001.00--------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................CGGGCCGCCGCCGCGCCG......................................................................... 181.000.00--------------------------------------------------------------------------------------1.00------------------------
........................................................................................................................................GGGGGCGGGGAGGGGGGCGGA............................................................................................. 211.000.00-----------------------------------------------------------1.00---------------------------------------------------
.......................................................................................................................................GGGGGGCGGGGAGGGGGGGCCC............................................................................................. 221.000.00---------1.00-----------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGGGG......................... 191.000.00--1.00------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................GGCGCGCGCGGGGGGCGTGGGG....................... 221.000.001.00--------------------------------------------------------------------------------------------------------------
..............................................................................................................................................GGGGAGGGGGGCGCGCCACCC....................................................................................... 211.000.00-----------------------------------------------------1.00---------------------------------------------------------
.............................................................................................................................................................................................................GGCGCGCGCGGGGGGCGGG.......................... 191.000.00---1.00-----------------------------------------------------------------------------------------------------------
..CTTTAGGTGCGAGGACTTGTAGTAGG.............................................................................................................................................................................................................................. 2611.001.00------1.00--------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGTGGGGA...................... 221.000.00------------------------------1.00--------------------------------------------------------------------------------
....................................................................................................CTCCCCCGCCAGGACTT..................................................................................................................................... 171.000.00-------------------------------------------------1.00-------------------------------------------------------------
..............................................................................................................................................................................................................GCGCGCGCGGGGGGCGTGGGG....................... 211.000.00-1.00-------------------------------------------------------------------------------------------------------------
...............................................................................CAGGCGGCCGCCCCC............................................................................................................................................................ 1560.500.500.170.17--------0.17----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................CACGCCCCCCGCGCG.......................... 1530.330.330.33--------------------------------------------------------------------------------------------------------------
................................................................................................................................GGCGCGTGGGGGGCGGGC........................................................................................................ 180.330.00--0.33------------------------------------------------------------------------------------------------------------
................................................................................................................................CCCGCCCCCCACGCGCC......................................................................................................... 1730.330.33------------------------------------------------------------------------------------------------0.33--------------
........................................................................................................................................GGGGGCGGGGAGGGGGGCGGGA............................................................................................ 2240.250.000.25--------------------------------------------------------------------------------------------------------------
........................................................................................................................................GGGGGCGGGGAGGGGGGCGGTA............................................................................................ 2240.250.00---------0.25-----------------------------------------------------------------------------------------------------
................................................................................................................................................GGAGGGGGGCGCGCCACC........................................................................................ 180.200.00--------------------------------------0.20------------------------------------------------------------------------
...............................................................................................................................................GGCGCGCCCCCCTCCC........................................................................................... 1650.200.20-------0.20-------------------------------------------------------------------------------------------------------
................................................................................................................................................GGCGCGCCCCCCTCC........................................................................................... 1550.200.20---------------------------------------------------------------------------------------------------------0.20-----
...............................................................................GGGGGCGGCCGCCTGTCGC........................................................................................................................................................ 190.170.00------------------0.17--------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................CCCCCCGCGCGCGCC.............................. 1570.140.14-------------------0.14-------------------------------------------------------------------------------------------
.......................................................................................................................................................GGCGCGCCCGGGCCGGGG................................................................................. 180.110.00--------------------------------------------------------------------------------------------------------------0.11
.......................................................................................................................................................CGGCCCGGGCGCGCC.................................................................................... 1590.110.11-------------------------------------------------------------------------------------------------------------0.11-