ID: uc002lqo.1_intron_0_0_chr19_1000863_f.5p
GENE: GRIN3B(1)
chr19:1000813-1001062+


(1)
AGO1.ip
(1)
BRAIN
(10)
BREAST
(11)
CELL-LINE
(4)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(3)
LIVER
(4)
OTHER
(21)
SKIN

Sense strand
CCGTGCTCAGCCTGCTGCGGCGGGAGGCGCGCGCGCCCCTCGGAGCCCCGGTACGCGGGACGCCCGGAGTCAGGACGAGGGGGACCCGGGGCGGGAGCGGGGTCGGGAGCCCTGGGGACGTCCGGAGTCAGGATGGGGGTGCCGGGACTACGCAGGGAAGGGGGATCCCGGGACGCTGGACGGGCCCCAGGGATCAGGGATGGGGAAGACCCGGGTGTCCCCGGAGCAAGGAAACCAGAACCCAGAGGAA
.......................................................(((.((.((((((.((.(((((.......((((((((.....((....))...))))))))..))))).)).))....)))).)).)))..........................................................................................................
..................................................51..............................................................................................147.....................................................................................................
SizePerfect hitTotal NormPerfect NormTAX577738(Rovira)
total RNA. (breast)
TAX577740(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR189783SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
TAX577742(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR343334SRR037936(GSM510474)
293cand1. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
TAX577746(Rovira)
total RNA. (breast)
SRR040037(GSM532922)
G243T. (cervix)
SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR189785SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
TAX577741(Rovira)
total RNA. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR029130(GSM416759)
DLD2. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
....................................................ACGCGGGACGCCCGGGT.....................................................................................................................................................................................1776.000.0026.0020.0014.00-5.004.00-1.001.002.002.00---------1.00-----------------------------------
....................................................ACGCGGGACGCCCGGG......................................................................................................................................................................................167.000.00--------1.00---1.00--1.00------1.00--1.00-----1.00----------1.00-------------
....................................................ACGCGGGACGCCCGGGC.....................................................................................................................................................................................177.000.005.001.00-----1.00------------------------------------------------
...........................................................................CGAGGGGGACCCGGG................................................................................................................................................................1556.006.00--------0.40----1.400.400.201.20---------------------------0.600.400.400.40-0.20-0.200.20---
....................................................ACGCGGGACGCCCGGGG.....................................................................................................................................................................................173.000.001.00-1.00------------------------------1.00----------------------
....................................................ACGCGGGACGCCCGGGA.....................................................................................................................................................................................172.000.001.001.00------------------------------------------------------
..............................................................................................................................GTCAGGATGGGGGTGCGGG.........................................................................................................191.000.00---------------------1.00----------------------------------
..............................................................................................................................GTCAGGATGGGGGTGCGGAC........................................................................................................201.000.00------------------------1.00-------------------------------
...............................................................CCGGAGTCAGGACGAGAA.........................................................................................................................................................................181.000.00-------------------------------------------1.00------------
..................................................................................................................................................................................................................................CAAGGAAACCAGAACTCTG.....191.000.00-----------------------------------1.00--------------------
..............................................................................................................................GTCAGGATGGGGGTGCG...........................................................................................................171.000.00----1.00---------------------------------------------------
.........................................................................................................................CCGGAGTCAGGATGGCCGA..............................................................................................................191.000.00---------------------------------------1.00----------------
....................................................ACGCGGGACGCCCGGCA.....................................................................................................................................................................................171.000.00-1.00------------------------------------------------------
....................................................ACGCGGGACGCCCGGAT.....................................................................................................................................................................................171.000.00-------1.00------------------------------------------------
..................................................................................................GGGGTCGGGAGCCCTCGG......................................................................................................................................181.000.00-------------------1.00------------------------------------
....................................................ACGCGGGACGCCCGGCT.....................................................................................................................................................................................171.000.001.00-------------------------------------------------------
...................................................TACGCGGGACGCCCGGGC.....................................................................................................................................................................................181.000.00----------------------------1.00---------------------------
...........................CGCGCGCGCCCCTCGGCC.............................................................................................................................................................................................................181.000.00------1.00-------------------------------------------------
................GCGGCGGGAGGCGCGCCGCG......................................................................................................................................................................................................................201.000.00------1.00-------------------------------------------------
..............................................................................................................................GTCAGGATGGGGGTGTGT..........................................................................................................181.000.00---------------------------1.00----------------------------
..............................................................................................................................GTCAGGATGGGGGTGCGTT.........................................................................................................191.000.00----------------------------------1.00---------------------
..................................................................................................................................................................GGATCCCGGGACGCTA........................................................................161.000.00-------------------------------------1.00------------------
..................................................................................GACCCGGGGCGGGAGT........................................................................................................................................................161.000.00-----------------------------------------1.00--------------
..............................................................................................................................GTCAGGATGGGGGTGCGG..........................................................................................................181.000.001.00-------------------------------------------------------
....................................................ACGCGGGACGCCCGGGTTT...................................................................................................................................................................................191.000.00------------------1.00-------------------------------------
.....................................................................................................GTCGGGAGCCCTGGGGA....................................................................................................................................1720.500.50------------0.50-------------------------------------------
............................................................................GAGGGGGACCCGGGGC..............................................................................................................................................................1640.250.25------------------------------------------------0.25-------
.....................................................................................................GTCGGGAGCCCTGGG......................................................................................................................................1580.250.25------------0.12------------------------------------------0.12
...........................................................................CGAGGGGGACCCGGGCAC.............................................................................................................................................................1850.206.00--------------------------------------------------0.20-----
...........................................................................CGAGGGGGACCCGGGCACC............................................................................................................................................................1950.206.00-----------------------------------------------------0.20--
.....................GGGAGGCGCGCGCGC......................................................................................................................................................................................................................1570.140.14------------------------------------------------------0.14-

Antisense strand
CCGTGCTCAGCCTGCTGCGGCGGGAGGCGCGCGCGCCCCTCGGAGCCCCGGTACGCGGGACGCCCGGAGTCAGGACGAGGGGGACCCGGGGCGGGAGCGGGGTCGGGAGCCCTGGGGACGTCCGGAGTCAGGATGGGGGTGCCGGGACTACGCAGGGAAGGGGGATCCCGGGACGCTGGACGGGCCCCAGGGATCAGGGATGGGGAAGACCCGGGTGTCCCCGGAGCAAGGAAACCAGAACCCAGAGGAA
.......................................................(((.((.((((((.((.(((((.......((((((((.....((....))...))))))))..))))).)).))....)))).)).)))..........................................................................................................
..................................................51..............................................................................................147.....................................................................................................
SizePerfect hitTotal NormPerfect NormTAX577738(Rovira)
total RNA. (breast)
TAX577740(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR189783SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
TAX577742(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR343334SRR037936(GSM510474)
293cand1. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
TAX577746(Rovira)
total RNA. (breast)
SRR040037(GSM532922)
G243T. (cervix)
SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR189785SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
TAX577741(Rovira)
total RNA. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR029130(GSM416759)
DLD2. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
..................................................................................................................................................................GGATCCCGGGACGCTAAA...................................................................... 186.000.00---5.00--------------------------------1.00-------------------
..................................................................................................................................................................GGATCCCGGGACGCTAAT...................................................................... 182.000.00---2.00----------------------------------------------------
.......................................................................................................................................................................................................................CTTGCTCCGGGGACA.................... 1512.002.00--------------1.00-----------------1.00-----------------------
........................AGGCGCGCGCGCCCCTGGA............................................................................................................................................................................................................... 191.000.00----------------------------------------1.00---------------
...........................CGCGCGCGCCCCTCGTGTG............................................................................................................................................................................................................ 191.000.00--1.00-----------------------------------------------------
.........................GGCGCGCGCGCCCCTCGGACCA........................................................................................................................................................................................................... 221.000.00-----------------------------1.00--------------------------
....................CGGGAGGCGCGCGCGCG..................................................................................................................................................................................................................... 171.000.00-----------------1.00--------------------------------------
..................................................GTACGCGGGACGCCCGAAT..................................................................................................................................................................................... 191.000.00------------------------------1.00-------------------------
..................................................................................................................................................................GGATCCCGGGACGCTAAC...................................................................... 181.000.00---1.00----------------------------------------------------
..............................................................................GGGGGACCCGGGGCGGGGCC........................................................................................................................................................ 201.000.00-----------1.00--------------------------------------------
.................................................................................................................................................................GGGATCCCGGGACGCTAT....................................................................... 181.000.00--------------------------------------1.00-----------------
.................................................................................................................................................................GGGATCCCGGGACGCTAA....................................................................... 181.000.00--------------------------1.00-----------------------------
..............................................................................GGGGGACCCGGGGCGGGT.......................................................................................................................................................... 181.000.00-----------------------1.00--------------------------------
................................................................................................................................................................................................................ACCCGGGTGTCCCCGGTC........................ 181.000.00------1.00-------------------------------------------------
.................................................................................................................................................................................................................CCGGGGACACCCGGG.......................... 1530.670.67------0.33----0.33--------------------------------------------
.................................................................................................................................................................................................................CCCGGGTGTCCCCGGGCCG...................... 190.330.00-----------0.33--------------------------------------------
.................................................................................................................................................................................................................CCCGGGTGTCCCCGGC......................... 160.330.00-----------0.33--------------------------------------------