ID: uc002lqc.2_intron_3_0_chr19_861957_f.3p
GENE: (4)
chr19:862892-863141+


(2)
AGO2.ip 		(1)
B-CELL 		(10)
BREAST 		(10)
CELL-LINE 		(6)
CERVIX 		(7)
HEART 		(1)
LIVER 		(1)
OTHER 		(45)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GCGGGCCTAGAGGGGCGTGGCTTGTGGTTGTGGCCTAGGCGATAGGCGTGGCGCGGGGCTATTGACTAGTGAAGACCAAATTAACACGGGAGGGATGAGCGAGCATTGTGGGGCGGGAGCGGCAGCCAGGTGAGGGGGTCTAACACGTGAGGCCGGGGTGGGCGCGGGCCGCCCCTCACGGCCCCGTCCTGTTCCGGCAGGGTGACTCCGGGGGCCCGCTGGTGTGCGGGGGCGTGCTCGAGGGCGTGGT
....................................................................................(((.((.....((.((..((........))....))..)).))..)))....(((((........)))))................................................................................................
.............................................................................78............................................................................156............................................................................................
SizePerfect hitTotal NormPerfect NormSRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577589(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553574(SRX182780)
source: Heart. (Heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		GSM532876(GSM532876)
G547T. (cervix)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040009(GSM532894)
G727T. (cervix)		GSM532874(GSM532874)
G699T. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................................................................................GGGGTCTAACACGTGC....................................................................................................16168.003.009.003.004.005.002.001.004.003.003.002.005.002.002.00--1.00-1.00--2.002.002.001.00-2.00---1.00-2.00-1.00-----1.00-2.00------------1.00---1.00------------1.001.00------1.00---
......................................................................................................................................GGGGTCTAACACGTGCGC..................................................................................................18157.003.005.008.003.002.001.003.001.002.00-1.00-3.00--1.002.00-3.001.001.00-1.00-2.001.001.001.001.002.00-2.00-2.00--1.001.00--1.00---------1.001.00--------1.00--------------------1.00--
......................................................................................................................................GGGGTCTAACACGTGCG...................................................................................................17130.003.001.00-4.001.001.003.00-1.001.001.00--2.00-3.00---2.001.00----2.00-1.001.00------1.00--------1.00--------1.00-------------1.00---------------1.00
......................................................................................................................................GGGGTCTAACACGTGCGCG.................................................................................................1917.003.00---1.00--------------1.00-------------------1.00-----------------1.001.00---------------1.00----1.00----
..................................................................................AACACGGGAGGGATGAG.......................................................................................................................................................1714.004.00----------------4.00------------------------------------------------------------------
..................................................................................................................................................................................................................................CGGGGGCGTGCTCGA.........1514.004.00-------------4.00---------------------------------------------------------------------
......................................................................................................................................GGGGTCTAACACGTG.....................................................................................................1513.003.00----1.00--------------1.00-------------1.00-------------------------------------------------
..................................................................................................................................................................................CGGCCCCGTCCTGTTCCGGCAGA.................................................232.000.00----------------------1.00-------------------------1.00----------------------------------
...................................................................................................................................................................................................................................GGGGGCGTGCTCGAGGGC.....1812.002.00--------------------1.00-----1.00--------------------------------------------------------
......................................................................................................................................GGGGTCTAACACGTGAGCAAG...............................................................................................212.000.00---------------------------------------------------------------1.00-1.00-----------------
.............................................................................AAATTAACACGGGAGGGATGAGCG.....................................................................................................................................................2411.001.00----------------------------------------------------------------1.00------------------
.....................................................................................................................................GGGGGTCTAACACGTGCGG..................................................................................................191.000.00-----------------------------------------------------1.00-----------------------------
.........................................................................................................................................................................................................GTGACTCCGGGGGCCCGCT..............................1911.001.00----------------------------------------------------------------------------1.00------
.................................................................................................................................................................................................................GGGGGCCCGCTGGTGTG........................1711.001.00----1.00------------------------------------------------------------------------------
..................................................................................................................................................................................CGGCCCCGTCCTGTTCCGGCAGT.................................................231.000.00--------------------------------------1.00--------------------------------------------
.......................................................................................................................................GGGTCTAACACGTGAGGGAG...............................................................................................201.000.00----------------------------------------------------------------------1.00------------
..................................................................................................................................................................................................................................CGGGGGCGTGCTCGAGGGCG....2011.001.00----------------------------------------1.00------------------------------------------
.....................................................................................ACGGGAGGGATGAGCGAGCA.................................................................................................................................................2011.001.00------1.00----------------------------------------------------------------------------
...........GGGGCGTGGCTTGTGGCG.............................................................................................................................................................................................................................181.000.00-------------------------------------1.00---------------------------------------------
......................................................................................................................................GGGGTCTAACACGTGCTCG.................................................................................................1911.003.00------------------------------------1.00----------------------------------------------
..........AGGGGCGTGGCTTGTCCA..............................................................................................................................................................................................................................181.000.00-----------------------------------------------------------------------------1.00-----
.....................................................................................................................................GGGGGTCTAACACGTGCGC..................................................................................................191.000.00-----1.00-----------------------------------------------------------------------------
.....................................................................................ACGGGAGGGATGAGCGAGC..................................................................................................................................................1911.001.00----------------------------------1.00------------------------------------------------
.............................................................................................................................................................................................................................GTGTGCGGGGGCGTGCTCGA.........2011.001.00---------------1.00-------------------------------------------------------------------
............................................................................................................TGGGGCGGGAGCGGCT..............................................................................................................................161.000.00--------------------------------------------1.00--------------------------------------
...................................................................................................................................................................................GGCCCCGTCCTGTTCCGGCAGT.................................................221.000.00----------------------------------------------1.00------------------------------------
........................................................................................................................................................................................................................CGCTGGTGTGCGGGGGCGTGCTCGAGGGCGT...3111.001.00----1.00------------------------------------------------------------------------------
........................................................................................................................................................................................................GGTGACTCCGGGGGCCCGCT..............................2011.001.00-----------------------------1.00-----------------------------------------------------
....................................................................................................................................AGGGGGTCTAACACGTGCGCG.................................................................................................211.000.00---------1.00-------------------------------------------------------------------------
.......................................CGATAGGCGTGGCGCGGGGCTACTG..........................................................................................................................................................................................251.000.00-------------------------------------------------------------------1.00---------------
......................................................................................CGGGAGGGATGAGCGAGCATTG..............................................................................................................................................2211.001.00---------------------------------------------------------------------------------1.00-
................................................................................................................................................................................................................................TGCGGGGGCGTGCTCGAGGG......2011.001.00-------------------------------------1.00---------------------------------------------
......................................................................................................................................GGGGTCTAACACGTGCCAG.................................................................................................1911.003.00-------------------------------------------------------------1.00---------------------
..............................................................................................................................................................................................................................TGTGCGGGGGCGTGCTCGAGGGCG....2411.001.00----------------------------------------1.00------------------------------------------
.....................................................................................ACGGGAGGGATGAGCGAG...................................................................................................................................................1811.001.00---------------------------------------------------------------------------1.00-------
.....................................................................................................................................GGGGGTCTAACACGTGCG...................................................................................................181.000.00--1.00--------------------------------------------------------------------------------
..........................................................................................AGGGATGAGCGAGCATTG..............................................................................................................................................1811.001.00------------1.00----------------------------------------------------------------------
.......................................................................................................................................................................................................................CCGCTGGTGTGCGGGGGCG................1911.001.001.00----------------------------------------------------------------------------------
..................................................................................................................................................................................................................GGGGCCCGCTGGTGTGCGGGGGCGT...............2511.001.00--------------------------------------------------------------------------1.00--------
...................................................................................................................................................................................GGCCCCGTCCTGTTCCGGCAGA.................................................221.000.00-------------------------------------------------------1.00---------------------------
......................................................................................................................................................................................................................CCCGCTGGTGTGCGGGGGCGTGCTCGAGG.......2911.001.00--------------------------------------------------------------------1.00--------------
....................................................................................................................................................GAGGCCGGGGTGGGCGGCT...................................................................................191.000.00------------------------------------------------------------1.00----------------------
.........................................................................................................................................................................................................GTGACTCCGGGGGCCCGC...............................1811.001.00--------------------------------------------------------------1.00--------------------

Antisense strand
GCGGGCCTAGAGGGGCGTGGCTTGTGGTTGTGGCCTAGGCGATAGGCGTGGCGCGGGGCTATTGACTAGTGAAGACCAAATTAACACGGGAGGGATGAGCGAGCATTGTGGGGCGGGAGCGGCAGCCAGGTGAGGGGGTCTAACACGTGAGGCCGGGGTGGGCGCGGGCCGCCCCTCACGGCCCCGTCCTGTTCCGGCAGGGTGACTCCGGGGGCCCGCTGGTGTGCGGGGGCGTGCTCGAGGGCGTGGT
....................................................................................(((.((.....((.((..((........))....))..)).))..)))....(((((........)))))................................................................................................
.............................................................................78............................................................................156............................................................................................
SizePerfect hitTotal NormPerfect NormSRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577589(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553574(SRX182780)
source: Heart. (Heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		GSM532876(GSM532876)
G547T. (cervix)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040009(GSM532894)
G727T. (cervix)		GSM532874(GSM532874)
G699T. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................................................................................................................GTGGGCGCGGGCCGCCCGCAG........................................................................ 211.000.00-----------------------------------------------1.00-----------------------------------
...............................................................................................................................................................................................................CCGGGGGCCCGCTGGTGGG........................ 191.000.00--------1.00--------------------------------------------------------------------------
...........................................................................CCAAATTAACACGGGAGTAT........................................................................................................................................................... 201.000.00---------------------------------------------------------------------1.00-------------
...............................................................................................................................................................GGGCGCGGGCCGCCCCGC......................................................................... 181.000.00------------------------------------------1.00----------------------------------------
...................................................................................................................................................................................CGGAACAGGACGGGGCC...................................................... 1711.001.00---------------------------------------------------1.00-------------------------------
...............................................................................................................................................................................................................CCGGGGGCCCGCTGGTTGG........................ 191.000.00---------------------------------------------1.00-------------------------------------
...............................................................................................................................................................................................................CCGGGGGCCCGCTGGT........................... 161.000.00-1.00---------------------------------------------------------------------------------
...............................................................................................................................................................................................................CCGGGGGCCCGCTGGTGG......................... 181.000.00-1.00---------------------------------------------------------------------------------
...............................................................................................................................................................................................................CCGGGGGCCCGCTGGTTG......................... 181.000.00-1.00---------------------------------------------------------------------------------
......................................................................CGTGTTAATTTGGTCTTC.................................................................................................................................................................. 1811.001.00-----------------------------------1.00-----------------------------------------------
......................................................................................................TGCCGCTCCCGCCCCACAATGC.............................................................................................................................. 2211.001.00----1.00------------------------------------------------------------------------------