ID: uc002loa.2_intron_1_0_chr19_77091_r
GENE: (1)
chr19:77041-77379-


(1)
AGO2.ip
(2)
BRAIN
(5)
BREAST
(13)
CELL-LINE
(2)
LIVER
(1)
OTHER
(4)
SKIN

Sense strand
ATTTATGGCTTCGTGAAGTCTTTCCTGACCCCCGATGCTGCTGACTATAGGTAAGTCTGAGCAAATCTGGGGGAGCCTCATCTTGGCATGAGAAAGAGATGGCTTCTTCTAAGCCCACTGGCCGTGATCCCAGGATTATAACACATTCTGGCTCAAGTCCAGACTATTTGTAGAACACAGGAGATCCTCCATGAGAGGTAGTATAATATAGAGGATATGTGTGCTTACTAAGAGGCTGCCTGTCTGACCTTGGACAAGTTGTTTTTATTTATTTATTTATTTTTTATAGAGACAAAGTCTCACTATGTTGCTCAGGCTGGTCTTGAACTCCTGGCCTCA
.........................................................................................................................................................................((((.(((((....((((((.(((.............))).)))))).)))))..))))..((((((.((.(((((......))))).)).)))))).........................................................................
........................................................................................................................................................................169.....................................................................................................................289................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
TAX577745(Rovira)
total RNA. (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
TAX577741(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343335SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR038854(GSM458537)
MM653. (cell line)
.....................................................................................................................................................................................................................................................................TTTTTATTTATTTATTTATTTTTCATG...................................................2719.000.00-8.001.004.001.005.00------------------------
.............................................................................................................................................................................AACACAGGAGATCCTGGGT...................................................................................................................................................199.000.00----1.00-4.00-1.001.001.00------------1.00------
......................................................................................................................................................................................................................................................................TTTTATTTATTTATTTATTTTTTATAG..................................................2757.807.80-2.40-1.801.202.40------------------------
.....................................................................................................................................................................................................................................................................TTTTTATTTATTTATTTATTTCTTG.....................................................253.000.00---1.002.00-------------------------
.....................................................................................................................................................................................................................................................................TTTTTATTTATTTATTTATTTTTTACACG.................................................292.000.00---1.001.00-------------------------
.....................................................................................................................................................................................................................................................................TTTTTATTTATTTATTTATTTTTTATACG.................................................292.000.00-2.00----------------------------
......................................................................................................................................................................................................................................................................................................................CTCAGGCTGGTCTTGAACTCCGCAC....252.000.00--2.00---------------------------
.............................................................................................................................................................................AACACAGGAGATCCTGGGC...................................................................................................................................................191.000.00----------1.00-------------------
....................................................................................................................................................................................................................................................................GTTTTTATTTATTTATTTATTTTTGTG....................................................271.000.00--1.00---------------------------
................................................................................................................................................................................................................................................................................................................ATGTTGCTCAGGCTGGGCGA...............201.000.001.00-----------------------------
......................................................................................................................................................................TTTGTAGAACACAGGAGATCCTCT.....................................................................................................................................................241.000.00----------------------1.00-------
.....................................................................................................................................................................................................................................................................TTTTTATTTATTTATTTATTTTTTAATTG.................................................291.000.00---1.00--------------------------
................................................................................................................................................................................................................................................................................................................................TCTTGAACTCCTGGCCGGCA201.000.00-------------1.00----------------
...................................................................................................................................................................................................................................................................TGTTTTTATTTATTTATTTATTTTCTTG....................................................281.000.001.00-----------------------------
.........................................................................................................................................................................................................................................................................................................TCTCACTATGTTGCTCAGGCTGGTCCCC..............281.000.001.00-----------------------------
...................................................................................................................................................................................................................................................................................................................TTGCTCAGGCTGGTCTTGAACTCCTGGCCTCCC331.000.00--1.00---------------------------
...................................................................................................................................................................................................................................................................................................................TTGCTCAGGCTGGTCTTGAACTCCGAGC....281.000.001.00-----------------------------
..........................................................................................................................................................................TAGAACACAGGAGATTTCT......................................................................................................................................................191.000.00---------------1.00--------------
................................................................................................................................................................................................................................................................................................................................TCTTGAACTCCTGGCCGGC191.000.00-------------------1.00----------
..............................................................................................................................................................................ACACAGGAGATCCTCGGT...................................................................................................................................................181.000.00--------1.00---------------------
...................................................................................................................................................................................................................................................................TGTTTTTATTTATTTATTTATTTCAGA.....................................................271.000.00--1.00---------------------------
...................................................................................................................................................................................................................................................................TGTTTTTATTTATTTATTTATTTCAG......................................................261.000.001.00-----------------------------
.............................................................................................................................................................................................................................................................................................................................TGGTCTTGAACTCCTGGCCTCTGAA251.000.00---------------------1.00--------
.................................................................................................................................................................................................................................................................................................................................CTTGAACTCCTGGCCGGC181.000.00-----------1.00------------------
.....................................................................................................................................................................................................................................................................TTTTTATTTATTTATTTATTGGGG......................................................241.000.00--1.00---------------------------
.....................................................................................................................................................................................................................................................................TTTTTATTTATTTATTTATTTCTCG.....................................................251.000.00----1.00-------------------------
.....................................................................................................................................................................................................................................................................TTTTTATTTATTTATTTATTTTTCACG...................................................271.000.00----1.00-------------------------
......................................................................................................................................................................................................................................................................TTTTATTTATTTATTTATTTTTTATA...................................................2680.380.38-----0.38------------------------
................................................................................................................................................................................................................................................................AGTTGTTTTTATTTATTTATTTATTTT........................................................2740.250.25--0.25---------------------------
........................................................................................................................................................................TGTAGAACACAGGAGATCCTCCATGAGAGG.............................................................................................................................................3060.170.17------------0.17-----------------
....................................................................................................................................................................TATTTGTAGAACACAGGAGATCCT.......................................................................................................................................................2470.140.14----------------------------0.14-
......................................................................................................................................................................................................................................................................TTTTATTTATTTATTTATTTTTTATAACG................................................2980.120.38---0.12--------------------------
......................................................................................................................................................................................................................................................................TTTTATTTATTTATTTATTTTTTATACG.................................................2880.120.38---0.12--------------------------

Antisense strand
ATTTATGGCTTCGTGAAGTCTTTCCTGACCCCCGATGCTGCTGACTATAGGTAAGTCTGAGCAAATCTGGGGGAGCCTCATCTTGGCATGAGAAAGAGATGGCTTCTTCTAAGCCCACTGGCCGTGATCCCAGGATTATAACACATTCTGGCTCAAGTCCAGACTATTTGTAGAACACAGGAGATCCTCCATGAGAGGTAGTATAATATAGAGGATATGTGTGCTTACTAAGAGGCTGCCTGTCTGACCTTGGACAAGTTGTTTTTATTTATTTATTTATTTTTTATAGAGACAAAGTCTCACTATGTTGCTCAGGCTGGTCTTGAACTCCTGGCCTCA
.........................................................................................................................................................................((((.(((((....((((((.(((.............))).)))))).)))))..))))..((((((.((.(((((......))))).)).)))))).........................................................................
........................................................................................................................................................................169.....................................................................................................................289................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
TAX577745(Rovira)
total RNA. (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
TAX577741(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343335SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR038854(GSM458537)
MM653. (cell line)
..........................................................................................................................................................................................................................................................................................................................GGCTGGTCTTGAACTCCTGGCCTCAGGAC 292.000.001.00-1.00---------------------------
......................................................................................................................................................................................................................................................................................................AAGTCTCACTATGTTGCTCAGGCTGGTCTCACC............ 332.000.002.00-----------------------------
..........................................................................................................................................................................................................................................................................................................GAGTTCAAGACCAGCCTGAGCAACATAGTGAG......... 3201.001.00-------1.00----------------------
........................................................................................................................................................................................................................................................................................................GTTCAAGACCAGCCTGAGCAACATAGTGAGAC........... 3201.001.00-------1.00----------------------
................................................................................................................................................................................................................................................................................................................ATGTTGCTCAGGCTGGTCTTGATGAG......... 261.000.00--1.00---------------------------
.......................................................................................................................................................................................................................................................................................................AGTCTCACTATGTTGCTCAGGCTGGTCGT............... 291.000.00--1.00---------------------------
...........................................................................................................................................AACACATTCTGGCTCAATA..................................................................................................................................................................................... 191.000.00--------------1.00---------------
.................................................................................................GATGGCTTCTTCTAAGCCTTT............................................................................................................................................................................................................................. 211.000.00--------------------1.00---------
....................................GCTGCTGACTATAGGTG.............................................................................................................................................................................................................................................................................................. 171.000.00-------------------------1.00----
.......................CCTGACCCCCGATGCGG........................................................................................................................................................................................................................................................................................................... 171.000.00---------1.00--------------------
..................................................................................................................................................................................................GAGGTAGTATAATATCTTG.............................................................................................................................. 191.000.00-----------------1.00------------
......................................................................................................................................................................................................................................................................................................AAGTCTCACTATGTTGCTCAGGCTGGTCTGC.............. 311.000.001.00-----------------------------
.......................................................................................................................................................................................................................................................................................................AGTCTCACTATGTTGCTCAGGCTGGTCTTCG............. 311.000.001.00-----------------------------
.....................................................................................................................................................................................................................................................................................................................GCTCAGGCTGGTCTTGTCTG.......... 201.000.00------------1.00-----------------
..................................................................................................................................................................................................................................................................................................................GTTGCTCAGGCTGGTCTTGAACTCGGC...... 271.000.001.00-----------------------------
.......................................................................................................................................................................................................................................................................................................AGTCTCACTATGTTGCTCAGGCTCG................... 251.000.00--1.00---------------------------
..................................................................................................................................................................................................................................................................................................................GTTGCTCAGGCTGGTCTTGAACTCCTGGTG... 301.000.001.00-----------------------------
...........................................................................................................................................................................................................................................................................................................TCACTATGTTGCTCAGGCTGGTCTCTGG............ 281.000.001.00-----------------------------
........................................................................................................................................................................................................................................................................................................CCAGCCTGAGCAACATAGTGAGAC................... 2401.001.00----------------1.00-------------
........................................................................................................................................................................................................................................................................................................................CAGGCTGGTCTTGAACTCCTGGCCTCACCG 301.000.00--1.00---------------------------
.........................................................................................................................................................................................................................................................................................................TCTCACTATGTTGCTCAAGAA..................... 211.000.00------------------------1.00-----
....................................................................................................................................................................................................................................................................GTTTTTATTTATTTATTTATTTTTTCAG................................................... 281.000.00---1.00--------------------------
............................................................................................................................................................................................................................................................................................................ACCAGCCTGAGCAACATAGTG.................. 2101.001.00------------------1.00-----------
..........................................................................................................CTGGGATCACGGCCAGTGGGCTTAGAA.............................................................................................................................................................................................................. 2750.400.40-----------0.40------------------
............................................................................................................TCACGGCCAGTGGGCTTAG.................................................................................................................................................................................................................... 1950.200.20--------------------------0.20---
.......................TCAGCAGCATCGGGGGTCAGG....................................................................................................................................................................................................................................................................................................... 2170.140.14-----------------------------0.14
.........................................................................CATGCCAAGATGAGGCT......................................................................................................................................................................................................................................................... 1770.140.14---------------------------0.14--