ID: uc002lir.1_intron_0_0_chr18_60249130_f.3p
GENE: DKFZp451A185(1)
chr18:60251479-60251728+


(1)
AGO2.ip 		(7)
BRAIN 		(13)
BREAST 		(9)
CELL-LINE 		(8)
CERVIX 		(1)
FIBROBLAST 		(2)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(5)
SKIN 		(4)
UTERUS

Sense strand
TTCTGTAATGGGGGCACATCACACGTGTGGGGACCGGAGACCCTTCACGCAGTCACCTCCGCCTGCAGAGAATGCGGGCCTTGGTCACCAGAAGCTCTCAATCCCATGATCCGGTTTTGCTCTCTGAAATTTGGCGGTGGGAGTTGTGGTGAGGTGGGGGGTTGGGTGGTTCTTCATTGTTTTTCTTTTTCCTCTTGCAGTTCCAATTTGAGCCGCTGTGAAAAAGGCCTCCACCAGCCTCTCACCAGAA
....................................................................................(((((..((.((((((.(((((..((....(((..((.((........)).))..)))))..))).))..)))))).)).))))).................................................................................
...............................................................................80..........................................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR189787TAX577580(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577588(Rovira)
total RNA. (breast)		SRR040010(GSM532895)
G529N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR343335TAX577579(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR040031(GSM532916)
G013T. (cervix)		SRR040008(GSM532893)
G727N. (cervix)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR037938(GSM510476)
293Red. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)
.....................................................................................................................................................TGAGGTGGGGGGTTGTATA..................................................................................198.000.001.00---1.00-1.00---1.00----1.00-----1.00---1.00--------1.00------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGTGTG..................................................................................194.000.00----------1.00---------------------1.00------1.00-----------1.00-
.....................................................................................................................................................TGAGGTGGGGGGTTGGGTAGTT...............................................................................224.000.00-1.00----1.00-1.00---------------1.00----------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGTAA...................................................................................183.000.00------------1.00---------------1.00----------------1.00-------
.....................................................................................................................................................TGAGGTGGGGGGTTGTATT..................................................................................193.000.00-----1.00-------2.00---------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGTGTT..................................................................................193.000.00--------------------1.001.00------------------------------1.00
.....................................................................................................................................................TGAGGTGGGGGGTTGGGTAG.................................................................................202.000.001.001.00---------------------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGTGTA..................................................................................192.000.00-1.00---1.00-----------------------------------------------
...........................................................................................AAGCTCTCAATCCCAG...............................................................................................................................................162.000.00------------------2.00----------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGAT...................................................................................182.000.00------1.00----------------------1.00-----------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGTAAA..................................................................................192.000.00----1.00--------------------------------------------1.00---
.....................................................................................................................................................TGAGGTGGGGGGTTGTTGT..................................................................................192.000.00--------------------------------------1.00----1.00---------
.....................................................................................................................................................TGAGGTGGGGGGTTGTTAT..................................................................................192.000.00-----1.00------1.00----------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGGTTGTT...............................................................................222.000.00-1.00----------------------------1.00----------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGATGG.................................................................................202.000.00---1.00-------1.00-----------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGATAG.................................................................................202.000.002.00----------------------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGTAGA..................................................................................192.000.00-----------------------------------------------1.001.00----
.....................................................................................................................................................TGAGGTGGGGGGTTGGGTGTCG...............................................................................221.000.00----------------------------------------------1.00------
....................................................................................TCACCAGAAGCTCTCAATCCCATG..............................................................................................................................................2411.001.00---------------------------------1.00-------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGTAGG..................................................................................191.000.00---1.00-------------------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGTGT...................................................................................181.000.00---1.00-------------------------------------------------
...................................................................................................................................................................................TTTTTCTTTTTCCTCGGTT....................................................191.000.00----------------1.00------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGGTATTT...............................................................................221.000.00----------------------------------------1.00------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGACAG.................................................................................201.000.00---------1.00-------------------------------------------
.............................................................................................................................................AGTTGTGGTGAGGTGGGGGG.........................................................................................2011.001.00---------------------------1.00-------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGGTGGTTG..............................................................................2311.001.00--------------------1.00--------------------------------
..........................................................................................................................................................TGGGGGGTTGGGTGGTTTGGT...........................................................................211.000.00-------1.00---------------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGGTAGTC...............................................................................221.000.00--------------------------------------------------1.00--
.....................................................................................................................................................TGAGGTGGGGGGTTGTAGT..................................................................................191.000.00-----------------------1.00-----------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGTTAG.................................................................................201.000.00---1.00-------------------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGGAGA.................................................................................201.000.00---1.00-------------------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGAGAC.................................................................................201.000.001.00----------------------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGAGAG.................................................................................201.000.001.00----------------------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGGTGGTTTT.............................................................................2411.001.00---------------1.00-------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGTAG...................................................................................181.000.00---1.00-------------------------------------------------
..................................................................................................................................................TGGTGAGGTGGGGGGGAA......................................................................................181.000.001.00----------------------------------------------------
..............CACATCACACGTGTGGGGACCGGAGACCCTTCACG.........................................................................................................................................................................................................3511.001.00----------------------1.00------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGGTTGGG...............................................................................221.000.00-1.00---------------------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGGTCGTT...............................................................................221.000.00-1.00---------------------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGTCGA..................................................................................191.000.001.00----------------------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGGTAGTG...............................................................................221.000.00-------1.00---------------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGGTGGTT...............................................................................2211.001.00-----------------------------------1.00-----------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGGTGGTGAT.............................................................................241.000.00-----------1.00-----------------------------------------
................................................................................................................GGTTTTGCTCTCTGAAATTTGGCGGT................................................................................................................2611.001.00--------------1.00--------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGATAT.................................................................................201.000.00-----------------------------------------1.00-----------
.....................................................................................................................................................TGAGGTGGGGGGTTGGGCAG.................................................................................201.000.00---------1.00-------------------------------------------
................................................................................................................................................................................TTGTTTTTCTTTTTCCTCTCC.....................................................211.000.00------------------------------------------1.00----------
.....................................................................................................................................................TGAGGTGGGGGGTTGGGTTGGT...............................................................................221.000.00-------1.00---------------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGGTAT.................................................................................201.000.00----1.00------------------------------------------------
...........................................................................................................................................................................................................CAATTTGAGCCGCTGTGAAAA..........................2111.001.00--------------1.00--------------------------------------
........................................................................TGCGGGCCTTGGTCACCAGAAGCCCTC.......................................................................................................................................................271.000.00----------------1.00------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGTATC..................................................................................191.000.00-----------------1.00-----------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGTC....................................................................................171.000.00----1.00------------------------------------------------
.......................................................................................................................................................AGGTGGGGGGTTGGGTGGT................................................................................1911.001.00--------------------------1.00--------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGGTGGAT...............................................................................221.000.00-1.00---------------------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGAAGC..................................................................................191.000.00-----------------1.00-----------------------------------
.................................................................................................................................TTTGGCGGTGGGAGTGTT.......................................................................................................181.000.00--------1.00--------------------------------------------

Antisense strand
TTCTGTAATGGGGGCACATCACACGTGTGGGGACCGGAGACCCTTCACGCAGTCACCTCCGCCTGCAGAGAATGCGGGCCTTGGTCACCAGAAGCTCTCAATCCCATGATCCGGTTTTGCTCTCTGAAATTTGGCGGTGGGAGTTGTGGTGAGGTGGGGGGTTGGGTGGTTCTTCATTGTTTTTCTTTTTCCTCTTGCAGTTCCAATTTGAGCCGCTGTGAAAAAGGCCTCCACCAGCCTCTCACCAGAA
....................................................................................(((((..((.((((((.(((((..((....(((..((.((........)).))..)))))..))).))..)))))).)).))))).................................................................................
...............................................................................80..........................................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR189787TAX577580(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577588(Rovira)
total RNA. (breast)		SRR040010(GSM532895)
G529N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR343335TAX577579(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR040031(GSM532916)
G013T. (cervix)		SRR040008(GSM532893)
G727N. (cervix)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR037938(GSM510476)
293Red. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)
................................................................GCAGAGAATGCGGGCCC......................................................................................................................................................................... 171.000.00-------------------1.00---------------------------------
.................................................................................................................................................................................TGTTTTTCTTTTTCCTCTCG..................................................... 201.000.00-------------------------------1.00---------------------
............................................................................................................................................................................................................AATTTGAGCCGCTGTGAATGCT........................ 221.000.00--1.00--------------------------------------------------
.............................................................................................................................................................................................................ATTTGAGCCGCTGTGAACTGC........................ 211.000.00--1.00--------------------------------------------------
..........................................................................................................................................................................................TTTTCCTCTTGCAGTTGGC............................................. 191.000.00-------------------------------------1.00---------------
......................................................................................................................................................................TGGTTCTTCATTGTTTTGC................................................................. 191.000.00--------------------------------------------1.00--------
...............................................................................................................................................................................................................TTGAGCCGCTGTGAAC........................... 161.000.00--1.00--------------------------------------------------
....................................GAGACCCTTCACGCAAAC.................................................................................................................................................................................................... 181.000.00------------------------------------1.00----------------
............................................................................................................................................................................................................AATTTGAGCCGCTGTGAATGC......................... 211.000.00--1.00--------------------------------------------------
.............................................................................................................................................................................................................ATTTGAGCCGCTGTGAACTGA........................ 211.000.00--1.00--------------------------------------------------
.............................................................................................................................................................................................................ATTTGAGCCGCTGTGAACTGT........................ 211.000.00--1.00--------------------------------------------------
.....................................................................................................................................................TGAGGTGGGGGGTTGGGTGC................................................................................. 201.000.00-------------------1.00---------------------------------
...............................................................................................................................................................................................................TTGAGCCGCTGTGAAT........................... 161.000.00--1.00--------------------------------------------------