ID: uc002lhc.2_intron_0_0_chr18_55816792_f.5p
GENE: NEDD4L(1)
chr18:55816742-55816991+


(1)
AGO2.ip 		(1)
B-CELL 		(13)
BRAIN 		(12)
BREAST 		(6)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(1)
HELA 		(4)
OTHER 		(1)
SKIN

Sense strand
AAACCTTTAATATTGTATTCTCCTAAATGAGACGTCTCGCATTTGAGCAGGTAACACTCGGTAAGACTTTGCTTGGTGGGGGAGGAGGTTTTACCTTCCTGTGGCATTCTGAAGCTCTCCACATCCACCCATAGTCATGATTGTGTTATATGACCTCAAGATGCTGGAGCTGTTAATTCATCTTTAACATAATTGACCTGATTACTTCTTTCTTGAAGGATTTTGTTCAAACCTCAGGGTTTATTTAGGA
...........................................................................((((((((((((((((((((.......)).....)))))).))))...))).)))))......................................................................................................................
.......................................................................72................................................................138..............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577746(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784TAX577580(Rovira)
total RNA. (breast)		SRR189786SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		TAX577742(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		TAX577745(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR189787SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
............................................................................TGGGGGAGGAGGTTTTACAGTT........................................................................................................................................................2213.000.00-6.00-2.001.002.00-1.00----1.00----------------------------
.............................................................................GGGGGAGGAGGTTTTACAGTT........................................................................................................................................................2112.000.004.001.00-1.003.002.001.00----------------------------------
.............................................................................GGGGGAGGAGGTTTTATAGT.........................................................................................................................................................2010.000.003.00---1.00-1.00--1.00---1.00---1.00--2.00--------------------
.............................................................................GGGGGAGGAGGTTTTACAGGT........................................................................................................................................................2110.000.006.00-----1.00--1.00---1.00-1.00-------------------------
.............................................................................GGGGGAGGAGGTTTTATAGG.........................................................................................................................................................208.000.008.00----------------------------------------
............................................................................TGGGGGAGGAGGTTTTACTGTT........................................................................................................................................................225.000.00-2.00--1.00-1.00------1.00---------------------------
.............................................................................GGGGGAGGAGGTTTTATTGT.........................................................................................................................................................205.000.002.00---------------1.00--------------1.001.00--------
.............................................................................GGGGGAGGAGGTTTTACAG..........................................................................................................................................................195.000.00--3.00----1.00-----------1.00---------------------
............................................................................TGGGGGAGGAGGTTTTATAGT.........................................................................................................................................................2134.330.67--------1.000.330.330.33-0.33---1.00------------------0.67-0.33--
.............................................................................GGGGGAGGAGGTTTTATTGG.........................................................................................................................................................204.000.002.00--1.00----------1.00--------------------------
.............................................................................GGGGGAGGAGGTTTTTTTA..........................................................................................................................................................194.000.001.001.00-1.00--------1.00----------------------------
.............................................................................GGGGGAGGAGGTTTTATAAT.........................................................................................................................................................204.000.003.00--1.00-------------------------------------
.............................................................................GGGGGAGGAGGTTTTACAGT.........................................................................................................................................................204.000.002.00------1.00-------1.00-------------------------
.............................................................................GGGGGAGGAGGTTTTACAGG.........................................................................................................................................................203.000.00---1.00-1.00----------1.00------------------------
.............................................................................GGGGGAGGAGGTTTTACAATT........................................................................................................................................................213.000.002.00---------1.00------------------------------
.............................................................................GGGGGAGGAGGTTTTATAAG.........................................................................................................................................................203.000.001.001.00-----1.00---------------------------------
.............................................................................GGGGGAGGAGGTTTTATAG..........................................................................................................................................................193.000.001.00-2.00--------------------------------------
............................................................................TGGGGGAGGAGGTTTTTT............................................................................................................................................................182.000.00--------------1.00------------1.00-------------
.............................................................................GGGGGAGGAGGTTTTAAAGT.........................................................................................................................................................202.000.00-1.00-------1.00-------------------------------
.............................................................................GGGGGAGGAGGTTTTTTTG..........................................................................................................................................................192.000.001.00------------------------1.00---------------
.............................................................................GGGGGAGGAGGTTTTACCGTT........................................................................................................................................................212.000.001.00---1.00------------------------------------
.............................................................................GGGGGAGGAGGTTTTACTGTT........................................................................................................................................................212.000.00------1.00---1.00------------------------------
...............................................................................GGGAGGAGGTTTTACAGGT........................................................................................................................................................192.000.00-----------2.00-----------------------------
.............................................................................GGGGGAGGAGGTTTTATTA..........................................................................................................................................................192.000.00-1.00--1.00------------------------------------
.............................................................................GGGGGAGGAGGTTTTAAAA..........................................................................................................................................................192.000.00--2.00--------------------------------------
.............................................................................GGGGGAGGAGGTTTTAAAG..........................................................................................................................................................192.000.00--2.00--------------------------------------
.............................................................................GGGGGAGGAGGTTTTACAA..........................................................................................................................................................192.000.00--2.00--------------------------------------
.............................................................................GGGGGAGGAGGTTTTATTAG.........................................................................................................................................................201.000.001.00----------------------------------------
.............................................................................GGGGGAGGAGGTTTTAGAG..........................................................................................................................................................191.000.00---------1.00-------------------------------
.............................................................................GGGGGAGGAGGTTTTTGTT..........................................................................................................................................................191.000.00-1.00---------------------------------------
.............................................................................GGGGGAGGAGGTTTTACCAGTT.......................................................................................................................................................221.000.00------------1.00----------------------------
.............................................................................GGGGGAGGAGGTTTTTA............................................................................................................................................................171.000.00---------------1.00-------------------------
............................................................................TGGGGGAGGAGGTTTTACAAGT........................................................................................................................................................221.000.00-1.00---------------------------------------
.............................................................................GGGGGAGGAGGTTTTACCGGT........................................................................................................................................................211.000.001.00----------------------------------------
.............................................................................GGGGGAGGAGGTTTTGTGT..........................................................................................................................................................191.000.00-1.00---------------------------------------
.............................................................................GGGGGAGGAGGTTTTATAA..........................................................................................................................................................191.000.00------------------1.00----------------------
...................................................................................................................TCTCCACATCCACCCAGCA....................................................................................................................191.000.00---------------------1.00-------------------
............................................................................TGGGGGAGGAGGTTTTACCGTTT.......................................................................................................................................................231.000.00----------1.00------------------------------
............................................................................TGGGGGAGGAGGTTTTTTT...........................................................................................................................................................191.000.00--------1.00--------------------------------
............................................................................TGGGGGAGGAGGTTTTTTAG..........................................................................................................................................................201.000.00------1.00----------------------------------
............................................................................TGGGGGAGGAGGTTTTACCGGT........................................................................................................................................................221.000.00-1.00---------------------------------------
.............................................................................GGGGGAGGAGGTTTTACCAG.........................................................................................................................................................201.000.001.00----------------------------------------
.............................................................................GGGGGAGGAGGTTTTATTG..........................................................................................................................................................191.000.00--------------1.00--------------------------
............................................................................TGGGGGAGGAGGTTTTGT............................................................................................................................................................181.000.00----------------------------------1.00------
.........................................................................................TTTACCTTCCTGTGGACTA..............................................................................................................................................191.000.00-----------------------1.00-----------------
.............................................................................GGGGGAGGAGGTTTTACAGC.........................................................................................................................................................201.000.001.00----------------------------------------
.............................................................................GGGGGAGGAGGTTTTTTAG..........................................................................................................................................................191.000.00-----1.00-----------------------------------
.............................................................................GGGGGAGGAGGTTTTACTGGT........................................................................................................................................................211.000.00-1.00---------------------------------------
.............................................................................GGGGGAGGAGGTTTTACAGAT........................................................................................................................................................211.000.001.00----------------------------------------
.............................................................................GGGGGAGGAGGTTTTTGTG..........................................................................................................................................................191.000.00----------1.00------------------------------
............................................................................TGGGGGAGGAGGTTTTACTAGT........................................................................................................................................................221.000.00---1.00-------------------------------------
.............................................................................GGGGGAGGAGGTTTTATTGA.........................................................................................................................................................201.000.001.00----------------------------------------
.............................................................................GGGGGAGGAGGTTTTACAAT.........................................................................................................................................................201.000.00-------1.00---------------------------------
............................................................................TGGGGGAGGAGGTTTTACAGT.........................................................................................................................................................211.000.00--------1.00--------------------------------
.............................................................................GGGGGAGGAGGTTTTATTAT.........................................................................................................................................................201.000.00---1.00-------------------------------------
...............................................................................GGGAGGAGGTTTTACAGG.........................................................................................................................................................181.000.00-----------1.00-----------------------------
............................................................................TGGGGGAGGAGGTTTTGTGG..........................................................................................................................................................201.000.00-----------------------------1.00-----------
.............................................................................GGGGGAGGAGGTTTTAAAAT.........................................................................................................................................................201.000.001.00----------------------------------------
.............................................................................GGGGGAGGAGGTTTTAATAG.........................................................................................................................................................201.000.001.00----------------------------------------
............................................................................TGGGGGAGGAGGTTTTTTA...........................................................................................................................................................191.000.00-1.00---------------------------------------
.............................................................................GGGGGAGGAGGTTTTGTTG..........................................................................................................................................................191.000.001.00----------------------------------------
.............................................................................GGGGGAGGAGGTTTTAACGG.........................................................................................................................................................201.000.00---1.00-------------------------------------
...............................................................................................................................................................GATGCTGGAGCTGTTATTTT.......................................................................201.000.00--------------------------1.00--------------
.............................................................................GGGGGAGGAGGTTTTTGT...........................................................................................................................................................181.000.00----1.00------------------------------------
............................................................................TGGGGGAGGAGGTTTTACTGGT........................................................................................................................................................221.000.00-1.00---------------------------------------
............................................................................TGGGGGAGGAGGTTTTACCGC.........................................................................................................................................................211.000.00-1.00---------------------------------------
.............................................................................GGGGGAGGAGGTTTTAAAGG.........................................................................................................................................................201.000.00-----------------------------------1.00-----
.............................................................................GGGGGAGGAGGTTTTATAAA.........................................................................................................................................................201.000.001.00----------------------------------------
............................................................................TGGGGGAGGAGGTTTTGCTG..........................................................................................................................................................201.000.00------------------------------1.00----------
............................................................................TGGGGGAGGAGGTTTTACCGT.........................................................................................................................................................211.000.00------------------1.00----------------------
............................................................................TGGGGGAGGAGGTTTTTTTG..........................................................................................................................................................201.000.00--------1.00--------------------------------
.............................................................................GGGGGAGGAGGTTTTACCGTTA.......................................................................................................................................................221.000.001.00----------------------------------------
...........................................................................GTGGGGGAGGAGGTTTTATAG..........................................................................................................................................................211.000.00--1.00--------------------------------------
............................................................................TGGGGGAGGAGGTTTTACAATT........................................................................................................................................................221.000.00-------1.00---------------------------------
............................................................................TGGGGGAGGAGGTTTTACGGTC........................................................................................................................................................221.000.00---------------------1.00-------------------
.............................................................................GGGGGAGGAGGTTTTAAAAA.........................................................................................................................................................201.000.001.00----------------------------------------
.............................................................................GGGGGAGGAGGTTTTACAAGT........................................................................................................................................................211.000.001.00----------------------------------------
............................................................................TGGGGGAGGAGGTTTTATAAT.........................................................................................................................................................2130.670.67--------0.33----------------------------0.33---
............................................................................TGGGGGAGGAGGTTTTATAG..........................................................................................................................................................2030.670.67--0.33-------------0.33------------------------
............................................................................TGGGGGAGGAGGTTTTA.............................................................................................................................................................1730.670.67---------------0.33---------------------0.33---
............................................................................TGGGGGAGGAGGTTTTATTGT.........................................................................................................................................................2130.330.67--------0.33--------------------------------
............................................................................TGGGGGAGGAGGTTTTATCG..........................................................................................................................................................2030.330.67-----------------0.33-----------------------
............................................................................TGGGGGAGGAGGTTTTATGG..........................................................................................................................................................2030.330.67----------------------------------------0.33
............................................................................TGGGGGAGGAGGTTTTATAGG.........................................................................................................................................................2130.330.67------------0.33----------------------------
............................................................................TGGGGGAGGAGGTTTTAGTTA.........................................................................................................................................................2130.330.67---------------------------------------0.33-
............................................................................TGGGGGAGGAGGTTTTATT...........................................................................................................................................................1930.330.67--------------0.33--------------------------
............................................................................TGGGGGAGGAGGTTTTATAAA.........................................................................................................................................................2130.330.67--------------------------------------0.33--
............................................................................TGGGGGAGGAGGTTTTATGTT.........................................................................................................................................................2130.330.67-----0.33-----------------------------------
............................................................................TGGGGGAGGAGGTTTTATTGG.........................................................................................................................................................2130.330.67------0.33----------------------------------
............................................................................TGGGGGAGGAGGTTTTAGA...........................................................................................................................................................1930.330.67-0.33---------------------------------------

Antisense strand
AAACCTTTAATATTGTATTCTCCTAAATGAGACGTCTCGCATTTGAGCAGGTAACACTCGGTAAGACTTTGCTTGGTGGGGGAGGAGGTTTTACCTTCCTGTGGCATTCTGAAGCTCTCCACATCCACCCATAGTCATGATTGTGTTATATGACCTCAAGATGCTGGAGCTGTTAATTCATCTTTAACATAATTGACCTGATTACTTCTTTCTTGAAGGATTTTGTTCAAACCTCAGGGTTTATTTAGGA
...........................................................................((((((((((((((((((((.......)).....)))))).))))...))).)))))......................................................................................................................
.......................................................................72................................................................138..............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577746(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784TAX577580(Rovira)
total RNA. (breast)		SRR189786SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		TAX577742(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		TAX577745(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR189787SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
....................................................................................................................................................................................................................TTGAAGGATTTTGTTCATC................... 191.000.00----------------------1.00------------------
.......................................................................................GTTTTACCTTCCTGTTCTG................................................................................................................................................ 191.000.00------------------------1.00----------------
...........................................................................................TACCTTCCTGTGGCATGCTG........................................................................................................................................... 201.000.00----------------------------1.00------------
....................................................................................................................................................................................................................TTGAAGGATTTTGTTCATT................... 191.000.00----------------------1.00------------------
......................................................................................................................................................................................................TGATTACTTCTTTCTTGACTA............................... 211.000.00---------------------------------1.00-------
.....TTTAATATTGTATTCTCCATA................................................................................................................................................................................................................................ 211.000.00-------------------1.00---------------------