ID: uc002lgi.2_intron_7_0_chr18_54305737_r.3p
GENE: (2)
chr18:54305687-54305936-


(1)
AGO2.ip 		(12)
B-CELL 		(4)
BRAIN 		(23)
BREAST 		(30)
CELL-LINE 		(11)
CERVIX 		(1)
FIBROBLAST 		(7)
HEART 		(3)
HELA 		(9)
LIVER 		(4)
OTHER 		(27)
SKIN 		(1)
XRN.ip

Sense strand
GGGCCCTGCCGCGCGGTGGCTGCTGGGTGCCGCACGCCTTCCCATCCTCCTCCTCTCCCCTCCCCCATCCCTCCCCGCCCCCTCGGCCGCTCCGCTCCCTGGCGTGACTCGGCACTGAGAGTCCCGGGAGAAGACTCGGCGGTCGCCACCTCTTCTGTCCAGGCCTCGGCCTTCCTGAGCATCTCTCCTTCCTCTCCCAGATCGTCTTCTCCTTCAGTTTCAAAGCCAGTGGCGTCGCGGCCACCCTGCC
.............................................................................................................................(((((((((...(((....)))...)))))).))).(((....)))...............................................................................
........................................................................................................................121..................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		TAX577740(Rovira)
total RNA. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		TAX577745(Rovira)
total RNA. (breast)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040028(GSM532913)
G026N. (cervix)		GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		SRR040016(GSM532901)
G645N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR040008(GSM532893)
G727N. (cervix)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR040030(GSM532915)
G013N. (cervix)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191519(GSM715629)
86genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM532874(GSM532874)
G699T. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR040031(GSM532916)
G013T. (cervix)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040007(GSM532892)
G601T. (cervix)		SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532890(GSM532890)
G576T. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM339994(GSM339994)
hues6. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR038860(GSM458543)
MM426. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR038863(GSM458546)
MM603. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
.............................................................................................................................GGGAGAAGACTCGGCGGT...........................................................................................................1818.008.00-----1.00---1.00-----------------------------1.00-----------------1.00--------------------------------1.00-----1.00----------------1.00-------1.00-----------
..........................................................................................................................CCCGGGAGAAGACTCGGC..............................................................................................................1816.006.00-------------------3.00---------------------------------------------------------------------------1.00-----------1.00-----------------1.00-------
.................................................................................................................ACTGAGAGTCCCGGGAGAA......................................................................................................................1915.005.00------------1.00---------1.00-------1.00----------------1.00--------------------------------------1.00----------------------------------------------
.................................................................................................................ACTGAGAGTCCCGGGAGAAGA....................................................................................................................2115.005.00-4.00---------------------------------------------------------------------1.00-------------------------------------------------------------
..........................................................................................................................CCCGGGAGAAGACTCGGCG.............................................................................................................1915.005.00---------------------2.00----------1.00------------------------------------------------------------------------1.00-----------1.00---------------
.............................................................................................................CGGCACTGAGAGTCCCGGGAGAAGA....................................................................................................................2514.004.00----------2.00---------------1.00------------------------------------------------------------------1.00---------------------------------------
..............................................................................CCCCTCGGCCGCTCCGCTCCCTGGCGTGACTCGGCA........................................................................................................................................3614.004.00------------2.00---------2.00--------------------------------------------------------------------------------------------------------------
.............................................................................................................CGGCACTGAGAGTCCCGGG..........................................................................................................................1914.004.00---1.00------------------------------------2.00-------------------------------------------------------------------------1.00------------------
.............................................................................................................CGGCACTGAGAGTCCCGG...........................................................................................................................1814.004.00-------3.00--------------------------------------------------1.00--------------------------------------------------------------------------
.............................................................................................................................GGGAGAAGACTCGGCGGG...........................................................................................................1814.001.00----1.00-----1.00---------------------------1.00------------------------1.00---------------------------------------------------------------------
.....................................................................................................................................ACTCGGCGGTCGCCACCTC..................................................................................................1913.003.003.00------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................GAGAGTCCCGGGAGAAGA....................................................................................................................1813.003.00----------------------------------------------------------------------------------1.00-----------1.00---------------------1.00----------------
............................................................................................................TCGGCACTGAGAGTCCCGGGAG........................................................................................................................2213.003.00-----3.00-------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................TCTGTCCAGGCCTCGGC................................................................................1713.003.001.002.00-----------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................AGTCCCGGGAGAAGACTCGG...............................................................................................................2013.003.00---------------------------------1.00------------1.00-----------------------1.00--------------------------------------------------------------
.................................................................................................................ACTGAGAGTCCCGGGAGAAGACTCGG...............................................................................................................2613.003.00-----------------------------1.00-------------------------------------------------------1.00----------------------------------------1.00------
.........................................................................................................................TCCCGGGAGAAGACTCGG...............................................................................................................1813.003.00--2.00----1.00-----------------------------------------------------------------------------------------------------------------------------
..............................................................................................................GGCACTGAGAGTCCCGGGAGAA......................................................................................................................2213.003.00------3.00------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................CGGCACTGAGAGTCCCGGGAGAAG.....................................................................................................................2413.003.00-----------2.00------------------------------------1.00------------------------------------------------------------------------------------
..........................................................................CCGCCCCCTCGGCCGCGG..............................................................................................................................................................183.000.00--------------------------------------------2.00----------------------------1.00-----------------------------------------------------------
..........................................................................................................................CCCGGGAGAAGACTCGGCGGT...........................................................................................................2113.003.00------------------------------------------------------------1.00--------1.00--------------------------------------------------1.00------------
.................................................................................................................ACTGAGAGTCCCGGGAGAAGAC...................................................................................................................2213.003.00---1.00-------------------------------1.00---1.00---------------------------------------------------------------------------------------------
..................................................................................................................................................CACCTCTTCTGTCCAGGC......................................................................................1812.002.00-------------------------------1.00--------------------------------------------------------------------------------------------1.00--------
.................................................................................................................ACTGAGAGTCCCGGGAGAAGACTCGGCGG............................................................................................................2912.002.00-----------------------------1.00-------------------------------------------------------------------------------------1.00-----------------
..........................................................................................................................CCCGGGAGAAGACTCGGCGGTCG.........................................................................................................2312.002.00-------------------------------------------2.00-----------------------------------------------------------------------------------------
..................................................................................................................CTGAGAGTCCCGGGAGAAGA....................................................................................................................2012.002.00--------------------------------------------------1.00---------------------1.00------------------------------------------------------------
..................................................................................................................................AAGACTCGGCGGTCGC........................................................................................................1612.002.00---2.00---------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................CGGCGGTCGCCACCTCTTCTGTCCAGGC......................................................................................2812.002.001.00------------------------------------------------------------------------------------------------1.00-----------------------------------
................................................................................................................................................................................................TCTCCCAGATCGTCTTCT........................................1812.002.00----2.00--------------------------------------------------------------------------------------------------------------------------------
....................................................................................................GGCGTGACTCGGCACTGAGAG.................................................................................................................................2112.002.00--------2.00----------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCGGCACTGAGAGTCCCGGGAGAAG.....................................................................................................................2512.002.00--------1.00----------------1.00-----------------------------------------------------------------------------------------------------------
.................................................................................................................................................CCACCTCTTCTGTCCAGG.......................................................................................1812.002.002.00------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................CGGGAGAAGACTCGGCGGT...........................................................................................................1912.002.001.001.00-----------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................CGGCACTGAGAGTCCTTGC..........................................................................................................................191.000.00--1.00----------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................CTGAGAGTCCCGGGAGAAGAC...................................................................................................................2111.001.00-----------------1.00-------------------------------------------------------------------------------------------------------------------
..............................................................................................................GGCACTGAGAGTCCCGGGAGAAGACT..................................................................................................................2611.001.00----1.00--------------------------------------------------------------------------------------------------------------------------------
..................................................................................................CTGGCGTGACTCGGCACTGAGA..................................................................................................................................2211.001.00------------------------1.00------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................CTCTCCTTCCTCTCCCAGATCGTCAA..........................................261.000.00---------------------------------------------------------------------------------------------------1.00---------------------------------
.....................................................................................................................................................CTCTTCTGTCCAGGCCTCGGCCTT.............................................................................2411.001.00------------------------------------------------------------------------------------------------------------1.00------------------------
.............................................................................................GCTCCCTGGCGTGACTCGGCACTGA....................................................................................................................................2511.001.00---------------1.00---------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................CTCTCCTTCCTCTCCCAGATCGTCTTCTCC......................................3011.001.00-----------------------1.00-------------------------------------------------------------------------------------------------------------
...............................................................................CCCTCGGCCGCTCCGGCCG........................................................................................................................................................191.000.00----------------------------------------------------1.00--------------------------------------------------------------------------------
...................................................................................................................TGAGAGTCCCGGGAGAAGACTCGGCGGT...........................................................................................................2811.001.00------------------1.00------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................CTTCTGTCCAGGCCTCGGCCTTCCTGA........................................................................2711.001.00---------------------------1.00---------------------------------------------------------------------------------------------------------
..........................................................................................................................CCCGGGAGAAGACTCGGCGGG...........................................................................................................2111.001.00--------------------1.00----------------------------------------------------------------------------------------------------------------
.............................................................................................GCTCCCTGGCGTGACTCGGCACTGAGA..................................................................................................................................2711.001.00--------------------------1.00----------------------------------------------------------------------------------------------------------
.............................................................................................................CGGCACTGAGAGTCCCGGGAGAAGACTC.................................................................................................................2811.001.00----------------1.00--------------------------------------------------------------------------------------------------------------------
.............................................................................................................................GGGAGAAGACTCGGCGGGG..........................................................................................................1911.001.00---------------------------------------------------1.00---------------------------------------------------------------------------------
...............................................................................................................................GAGAAGACTCGGCGGGCGC........................................................................................................191.000.00--------------------------------------1.00----------------------------------------------------------------------------------------------
......................................................................................................................................CTCGGCGGTCGCCACCTCTTCTGTCCAGGC......................................................................................3011.001.00------------------1.00------------------------------------------------------------------------------------------------------------------
..........................................................................................................ACTCGGCACTGAGAGTCCCGGGAGAAGAC...................................................................................................................2911.001.001.00------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................AGAGTCCCGGGAGAAGAC...................................................................................................................1811.001.00-----------------------------------------------------------------------------------1.00-------------------------------------------------
.................................................................................................................................GAAGACTCGGCGGTCGC........................................................................................................1711.001.00---------------1.00---------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TCTCCCAGATCGTCTTCTCCTTCAG.................................2511.001.00----------------1.00--------------------------------------------------------------------------------------------------------------------
.......................................................................................................................AGTCCCGGGAGAAGACTCGGC..............................................................................................................2111.001.00---------------------------------------------1.00---------------------------------------------------------------------------------------
.............................................................................................................CGGCACTGAGAGTCCCGGGTGCA......................................................................................................................2311.004.00---------------------------------------------------------------------------1.00---------------------------------------------------------
.............................................................................................................................GGGAGAAGACTCGGCGGTCGCCAC.....................................................................................................2411.001.00-----------------------------------------------------------------1.00-------------------------------------------------------------------
..........................................................................................................ACTCGGCACTGAGAGTCCCGGGAGAAGA....................................................................................................................2811.001.00-------------------------------------------------------------------------------------------------------------1.00-----------------------
........................................................................................................................GTCCCGGGAGAAGACTCGGCGGTCGC........................................................................................................2611.001.00-------------------------------------------------------------------------------------------------------1.00-----------------------------
........................................................................................................................................................................................................ATCGTCTTCTCCTTCACT................................181.000.00-----------------------------------------1.00-------------------------------------------------------------------------------------------
..........................................................................................................................CCCGGGAGAAGACTCGGCGGTCGC........................................................................................................2411.001.00---1.00---------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................ACTGAGAGTCCCGGGAGA.......................................................................................................................1811.001.00----------------------------------1.00--------------------------------------------------------------------------------------------------
..................................................................................................CTGGCGTGACTCGGCACTGA....................................................................................................................................2011.001.00-------------1.00-----------------------------------------------------------------------------------------------------------------------
...........................................................................................................................CCGGGAGAAGACTCGGCGGT...........................................................................................................2011.001.00-------------------------------------------------------1.00-----------------------------------------------------------------------------
...........................................................................................................................................................................................CTTCCTCTCCCAGATCGTC............................................1911.001.00------------------------------------------------------------------------------------1.00------------------------------------------------
.........................................................................................................................TCCCGGGAGAAGACT..................................................................................................................1511.001.00-------------------------------------------------------------------1.00-----------------------------------------------------------------
...............................................................................................................................................CGCCACCTCTTCTGTCCAGGC......................................................................................2111.001.00--------1.00----------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCGGCACTGAGAGTCCCGGGAGAAGACTCG................................................................................................................3011.001.00-----------------1.00-------------------------------------------------------------------------------------------------------------------
..........................................................................................TCCGCTCCCTGGCGTGACTCGGCA........................................................................................................................................2411.001.00---------------------1.00---------------------------------------------------------------------------------------------------------------
..............................................................................................CTCCCTGGCGTGACTCGGCA........................................................................................................................................2011.001.00--------------------------------------------------------------------------------------------------1.00----------------------------------
...................................................................................................................................................................CCTCGGCCTTCCTGAGCATCTCTCCTTC...........................................................2811.001.00------------------------1.00------------------------------------------------------------------------------------------------------------
...................................................................................................................................................ACCTCTTCTGTCCAGGCCTC...................................................................................2011.001.00--------------------------------1.00----------------------------------------------------------------------------------------------------
.................................................................................................................ACTGAGAGTCCCGGGAGAAG.....................................................................................................................2011.001.00------1.00------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................CGGTCGCCACCTCTTCTGTCC..........................................................................................2111.001.00--------------1.00----------------------------------------------------------------------------------------------------------------------
...........................................ATCCTCCTCCTCTCCACCC............................................................................................................................................................................................191.000.00--------------------------------------------------------------------------------------------1.00----------------------------------------
.............................................................................................GCTCCCTGGCGTGACTCGG..........................................................................................................................................1911.001.00--------------------------------------------------------------------------------------------------------------1.00----------------------
...................................................................................................................................................................CCTCGGCCTTCCTGAGCATCTCTCCT.............................................................2611.001.00---------1.00---------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................AGAGTCCCGGGAGAAGACTCGG...............................................................................................................2211.001.00--------------1.00----------------------------------------------------------------------------------------------------------------------
..................................................................................................................CTGAGAGTCCCGGGAGAAGACTCG................................................................................................................2411.001.00------------------------------------------1.00------------------------------------------------------------------------------------------
...................................................................................................................................................................................................CCCAGATCGTCTTCTCCTTCAGT................................2311.001.00---------1.00---------------------------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCGGCACTGAGAGT................................................................................................................................2011.001.00--------------------------------------------------------------------1.00----------------------------------------------------------------
.............................................................................................................................GGGAGAAGACTCGGCGGTC..........................................................................................................1911.001.00--------------------1.00----------------------------------------------------------------------------------------------------------------
......................................................................................................................GAGTCCCGGGAGAAGACTCGGCGGT...........................................................................................................2511.001.00------------------------------------------1.00------------------------------------------------------------------------------------------
....................................................................................................GGCGTGACTCGGCACTGA....................................................................................................................................1811.001.00-------------------------------------1.00-----------------------------------------------------------------------------------------------
.............................................................................................................CGGCACTGAGAGTCCCGGGAGAA......................................................................................................................2311.001.00-------------------------------------------------------------------------------------------------------------------------------1.00-----
.................................................................................................................................................................GGCCTCGGCCTTCCTGAGCAT....................................................................2111.001.00----1.00--------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................CGGGAGAAGACTCGGCGGTCGCC.......................................................................................................2311.001.00---------------------------------------------------------------------------------------1.00---------------------------------------------
.............................................................................................................................GGGAGAAGACTCGGCGG............................................................................................................1711.001.00---------------1.00---------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................CTCCTTCCTCTCCCAGATCGTCTTCT........................................2611.001.00--------------------------------------------------------------------------1.00----------------------------------------------------------
...................................................................................................................TGAGAGTCCCGGGAGAAGACTC.................................................................................................................2211.001.00---1.00---------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................CGGTCGCCACCTCTTCTG.............................................................................................1811.001.00--------------------------------------------------------------------------------------------------------------------------------1.00----
...........................................................................................CCGCTCCCTGGCGTGACTCGG..........................................................................................................................................2111.001.00--1.00----------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................GAGTCCCGGGAGAAGACTCG................................................................................................................2011.001.00------------------------------------------------------------------1.00------------------------------------------------------------------
....................................................................................................................GAGAGTCCCGGGAGAA......................................................................................................................1631.001.00---------------------------------------------------------------------------------------------------------------------------------0.67--0.33
..............................................................CCCCATCCCTCCCCGCCCCCGACT....................................................................................................................................................................241.000.00-------------------------------1.00-----------------------------------------------------------------------------------------------------
..................................................................................................................CTGAGAGTCCCGGGAGAAG.....................................................................................................................1911.001.00-----------------------------------------------------------------------------------------------------------------------1.00-------------
.............................................................................................................................GGGAGAAGACTCGGCGGTG..........................................................................................................1911.008.00----------------------------------------------------------------1.00--------------------------------------------------------------------
..............................................................................................................................GGAGAAGACTCGGCGGTCGC........................................................................................................2011.001.00-------------------------------------------------------------1.00-----------------------------------------------------------------------
..........................................................................................................ACTCGGCACTGAGAGTCCCGGGAGAAGACT..................................................................................................................3011.001.00------------------1.00------------------------------------------------------------------------------------------------------------------
.....................................................................................................GCGTGACTCGGCACTGAGA..................................................................................................................................1911.001.00-------------------------------------------------1.00-----------------------------------------------------------------------------------
.........................................................................................................GACTCGGCACTGAGAG.................................................................................................................................1611.001.00-------------1.00-----------------------------------------------------------------------------------------------------------------------
...................................................................................................TGGCGTGACTCGGCACTGA....................................................................................................................................1911.001.00-------------------------------------------------------------------------------1.00-----------------------------------------------------
............................................................................................................................CGGGAGAAGACTCGGCGGGTT.........................................................................................................211.000.00-----------------------------------------------------------1.00-------------------------------------------------------------------------
..................................................................................................................................................CACCTCTTCTGTCCAGGCCTCGGC................................................................................2411.001.00---------------------------------------------------------------------------------1.00---------------------------------------------------
......................................................................................................................GAGTCCCGGGAGAAGACTCGG...............................................................................................................2111.001.00-----------------------------------------------------------------------------------------1.00-------------------------------------------
................................................................................................................................................................AGGCCTCGGCCTTCCTGAGCATCTC.................................................................2511.001.00--------------------------------------------------------------------------------------------------------------------------1.00----------
.................................................................................................................................................................GGCCTCGGCCTTCCTGAG.......................................................................1811.001.00--------------------------------------------------------------1.00----------------------------------------------------------------------
........................................................................................................................................................................................CTCCTTCCTCTCCCAGATCGTCTTCTCCTTCAG.................................3311.001.00-----------------------1.00-------------------------------------------------------------------------------------------------------------
..........................................................................................................................CCCGGGAGAAGACTCGG...............................................................................................................1711.001.001.00------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................CCCGGGAGAAGACTCGGCGG............................................................................................................2011.001.00--------------1.00----------------------------------------------------------------------------------------------------------------------
............................................................................................................................CGGGAGAAGACTCGGCGGTCGCCACCT...................................................................................................2711.001.00------------------------------------------------------------------------------1.00------------------------------------------------------
.........................................................................................................................TCCCGGGAGAAGACTCGGCG.............................................................................................................2011.001.00----------------------------1.00--------------------------------------------------------------------------------------------------------
............................................................................................................................CGGGAGAAGACTCGGCG.............................................................................................................1711.001.00-------------------------------------1.00-----------------------------------------------------------------------------------------------
...................................................................................................................................................................................CATCTCTCCTTCCTCTCCCAGATCG..............................................2511.001.00--------------------------------------------------------------------------------1.00----------------------------------------------------
.................................................................................CTCGGCCGCTCCGCTCCCTGGCG..................................................................................................................................................2311.001.00--------------------------------------------------------------------------------------------------------1.00----------------------------
...............................................................................................................................................................................................CTCTCCCAGATCGTCTTCTCC......................................2111.001.00---------------------------------------------------------------------------------------------------------------1.00---------------------
................................................................................................................................................................AGGCCTCGGCCTTCCTGAGCATCTCTC...............................................................2711.001.00-----------------------------------------1.00-------------------------------------------------------------------------------------------
...............................................................................................................................................................CAGGCCTCGGCCTTCCTGAGCATA...................................................................241.000.00-----------------1.00-------------------------------------------------------------------------------------------------------------------
............................................................................................................................CGGGAGAAGACTCGGCGGTC..........................................................................................................2011.001.00----------------------------------------------------------------------------------------------------------1.00--------------------------
.............................................................................................................................................................................................TCCTCTCCCAGATCGTCTTCTCCTCCAG.................................281.000.00------------------------------------1.00------------------------------------------------------------------------------------------------
............................................................................................................................CGGGAGAAGACTCGGCGGG...........................................................................................................191.000.00--------------------1.00----------------------------------------------------------------------------------------------------------------
...........................................................................................................................CCGGGAGAAGACTCGGCGGG...........................................................................................................201.000.00--1.00----------------------------------------------------------------------------------------------------------------------------------
...........................................................................................CCGCTCCCTGGCGTGACTCGGCA........................................................................................................................................2311.001.00-----------1.00-------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................CAGGCCTCGGCCTTCCTGAGCATCTCTC...............................................................2811.001.00----------------------------------------------------------------------------------------------------1.00--------------------------------
.............................................................................................................................GGGAGAAGACTCGGCGGTCGCA.......................................................................................................221.000.00-----------------------------------------------------------------------------------------------------1.00-------------------------------
...............................................................................................TCCCTGGCGTGACTCGGCA........................................................................................................................................1911.001.00----------------------------------------------------------------------------------------------------------------1.00--------------------
......................................................................................................CGTGACTCGGCACTGAG...................................................................................................................................1711.001.00-------------------------------------------------------------------------------------------1.00-----------------------------------------
...................................................................................CGGCCGCTCCGCTCCCTG.....................................................................................................................................................1811.001.00----------------------------------1.00--------------------------------------------------------------------------------------------------
.............................................................................................................................................GTCGCCACCTCTTCTGTCCAG........................................................................................2111.001.00-----------------------------------------------------------------------------1.00-------------------------------------------------------
.......................................................................................................................AGTCCCGGGAGAAGACTCG................................................................................................................1911.001.00-------------1.00-----------------------------------------------------------------------------------------------------------------------
...................................................................................................................TGAGAGTCCCGGGAGAAGA....................................................................................................................1911.001.00----------------------------1.00--------------------------------------------------------------------------------------------------------
...................................................................................................................................................ACCTCTTCTGTCCAGGC......................................................................................1711.001.00-------------------------1.00-----------------------------------------------------------------------------------------------------------
...........................................................................................................CTCGGCACTGAGAGTCCCGGG..........................................................................................................................2111.001.00--1.00----------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................TCTTCTGTCCAGGCCTCGGC................................................................................2011.001.00----------------1.00--------------------------------------------------------------------------------------------------------------------
...........................................................................................................CTCGGCACTGAGAGTCCCGGGAG........................................................................................................................2311.001.00---------------------------------1.00---------------------------------------------------------------------------------------------------
.............................................................................................................................................GTCGCCACCTCTTCTGTCCAGG.......................................................................................2211.001.00------------------------------------------------------------------------------------------------------1.00------------------------------
.................................................CTCCTCTCCCCTCCCCCATCCC...................................................................................................................................................................................2220.500.50----------------------------------------------------------------------------------------------------------------------------------0.50--
..........................................................................................................................................................CTGTCCAGGCCTCGGCC...............................................................................1720.500.500.50------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................TGAGCATCTCTCCTTCC..........................................................1730.330.33-----------------------------------------------------------------------------------------------------------------------------------0.33-

Antisense strand
GGGCCCTGCCGCGCGGTGGCTGCTGGGTGCCGCACGCCTTCCCATCCTCCTCCTCTCCCCTCCCCCATCCCTCCCCGCCCCCTCGGCCGCTCCGCTCCCTGGCGTGACTCGGCACTGAGAGTCCCGGGAGAAGACTCGGCGGTCGCCACCTCTTCTGTCCAGGCCTCGGCCTTCCTGAGCATCTCTCCTTCCTCTCCCAGATCGTCTTCTCCTTCAGTTTCAAAGCCAGTGGCGTCGCGGCCACCCTGCC
.............................................................................................................................(((((((((...(((....)))...)))))).))).(((....)))...............................................................................
........................................................................................................................121..................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		TAX577740(Rovira)
total RNA. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		TAX577745(Rovira)
total RNA. (breast)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040028(GSM532913)
G026N. (cervix)		GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		SRR040016(GSM532901)
G645N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR040008(GSM532893)
G727N. (cervix)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR040030(GSM532915)
G013N. (cervix)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191519(GSM715629)
86genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM532874(GSM532874)
G699T. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR040031(GSM532916)
G013T. (cervix)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040007(GSM532892)
G601T. (cervix)		SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532890(GSM532890)
G576T. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM339994(GSM339994)
hues6. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR038860(GSM458543)
MM426. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR038863(GSM458546)
MM603. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
...................................................................................CGGCCGCTCCGCTCCCT...................................................................................................................................................... 171.000.00----------------------------------------------------------------------------------------------------------------------1.00--------------
........................................................................CCCCGCCCCCTCGGCGAGA............................................................................................................................................................... 191.000.00----------------------------------------------1.00--------------------------------------------------------------------------------------
.....................................................................................................................................................................................TCTCTCCTTCCTCTCCCAGGGG............................................... 221.000.00------------------------------------1.00------------------------------------------------------------------------------------------------
...............................................................................CCCTCGGCCGCTCCGCTAGC....................................................................................................................................................... 201.000.00------------------------------------------------------1.00------------------------------------------------------------------------------
....................................................................................................................................................................CTCGGCCTTCCTGAGCGGT................................................................... 191.000.00---------------------------------------------1.00---------------------------------------------------------------------------------------
.........................................................................................CTCCGCTCCCTGGCGTAAG.............................................................................................................................................. 191.000.00----------------------------------------------------------------------------------------1.00--------------------------------------------
....CCTGCCGCGCGGTGGCC..................................................................................................................................................................................................................................... 171.000.00-----------------------------------1.00-------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................CGCGGCCACCCTGCCCGGT 191.000.00------------------------------1.00------------------------------------------------------------------------------------------------------
..............................................................CCCCATCCCTCCCCGCT........................................................................................................................................................................... 171.000.00---------------------------1.00---------------------------------------------------------------------------------------------------------
........................................CCCATCCTCCTCCTCTCCT............................................................................................................................................................................................... 191.000.00-----------------------------------------------------1.00-------------------------------------------------------------------------------
...........................................................................CGCCCCCTCGGCCGCAG.............................................................................................................................................................. 171.000.00--------------------------------------------------------1.00----------------------------------------------------------------------------
....................................................................................................................................................CCTCTTCTGTCCAGGCAA.................................................................................... 181.000.00----------------------------------------------------------------------------1.00--------------------------------------------------------