ID: uc002lce.3_intron_18_0_chr18_44122819_r.5p
GENE: (3)
chr18:44125080-44125329-


(1)
AGO2.ip
(1)
B-CELL
(1)
BRAIN
(9)
BREAST
(25)
CELL-LINE
(3)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(2)
HELA
(6)
LIVER
(1)
OTHER
(4)
SKIN
(1)
UTERUS

Sense strand
CACAGATGCTAATGTCTTCATCACACTCTTTGGCACACAGGATGACACTGGTAAGAAAGCAGTGCAGGGCCAAGATTCACCCACATTCTTCCCCAGGGAGACCAGAAGACTCAGCAGAAATTTCCAAGGGGAATCCTAATTATGCTTTTGTCTCTCAATAGGATGCAAGCAATTAGCCCCATCGAGAAAGGCAGTTCCTTTTTTTCTAAAAATTTTCTTTTTCTCTGAGCCAGCTTTCTTTTTCTGTTCT
...................................................................................................................................................(((((((((.((.((..((((....)).)))).)).))))..)))))........................................................
...................................................................................................................................................148.......................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR037937(GSM510475)
293cand2. (cell line)
SRR343334SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR189782SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR037931(GSM510469)
293GFP. (cell line)
SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR040015(GSM532900)
G623T. (cervix)
SRR444064(SRX128912)
Sample 21cDNABarcode: AF-PP-334: ACG CTC TTC . (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR038854(GSM458537)
MM653. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR029130(GSM416759)
DLD2. (cell line)
SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)
SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR191394(GSM715504)
23genomic small RNA (size selected RNA from t. (breast)
GSM532876(GSM532876)
G547T. (cervix)
........................................................................................................................................................................................AGAAAGGCAGTTCCTGAA................................................18139.000.0038.0022.009.006.00-5.003.005.005.005.003.006.004.004.005.004.002.00--3.002.002.00-1.00--1.00-----1.001.00--1.00---1.00------------------
........................................................................................................................................................................................AGAAAGGCAGTTCCTGATT...............................................1950.000.00-22.0024.00---2.001.00--1.00------------------------------------------------
........................................................................................................................................................................................AGAAAGGCAGTTCCTGAAA...............................................1931.000.0019.00--1.00-1.004.001.00--1.00-----1.00-----2.00------------1.00-----------------------
........................................................................................................................................................................................AGAAAGGCAGTTCCTGAAT...............................................1911.000.004.00---------1.00-1.00---1.003.00-------1.00---------------------------------
........................................................................................................................................................................................AGAAAGGCAGTTCCTGAGA...............................................199.000.008.00------------1.00---------------------------------------------
.......................................................................................................................................................................................GAGAAAGGCAGTTCCT...................................................1667.177.17----6.50-------------------------------------0.33--0.170.17------------
........................................................................................................................................................................................AGAAAGGCAGTTCCTGATA...............................................196.000.00---2.00-2.00---1.00------------------1.00------------------------------
.......................................................................................................................................................................................GAGAAAGGCAGTTCCTGAA................................................1963.337.17----1.33-------0.33-------0.17--0.17------------------0.17-0.17--0.17-0.170.17--0.17-0.17-0.17-
........................................................................................................................................................................................AGAAAGGCAGTTCCTGTT................................................182.000.00---2.00-------------------------------------------------------
.......................................................................................................................................................................................GAGAAAGGCAGTTCCTGAAC...............................................2061.337.17--------1.33--------------------------------------------------
........................................................................................................................................................................................................................................GCTTTCTTTTTCTGTTGCCC201.000.00----------------------------------1.00------------------------
........................................................................................................................................................TCTCAATAGGATGCATAG................................................................................181.000.00------------------------1.00----------------------------------
........................................................................................................................................................................................AGAAAGGCAGTTCCTGAG................................................181.000.00------------------------------1.00----------------------------
........................................................................................................................................................................................AGAAAGGCAGTTCCTTATT...............................................191.000.00--1.00--------------------------------------------------------
.......................................................................................................................................................................................GAGAAAGGCAGTTCCGGA.................................................181.000.00-----------------------------------------1.00-----------------
...................................................................................................................................................................................................................................AGCCAGCTTTCTTTTCACA....191.000.00-------------------------------------1.00---------------------
......................................................................................................................................................................................CGAGAAAGGCAGTTCCT...................................................1711.001.00-----------------------------1.00-----------------------------
........................................................................................................................................................................................AGAAAGGCAGTTCCTGAC................................................181.000.00-----1.00-----------------------------------------------------
....................................................................................................................................................................................ATCGAGAAAGGCAGTTCCTGA.................................................211.000.001.00----------------------------------------------------------
................................................................................................................................................CTTTTGTCTCTCAATAGAAAC.....................................................................................211.000.00---------------------------1.00-------------------------------
.......................................................................................................................................................................................................................................AGCTTTCTTTTTCTGAGG.181.000.00---------------------------------------1.00-------------------
......................................................................................................................................................................................CGAGAAAGGCAGTTCCTGA.................................................1911.001.00-------------------------------1.00---------------------------
.......................................................................................................................................................................................GAGAAAGGCAGTTCCTGAAA...............................................2061.007.17----0.67-------------------------------------------0.17-------0.17--
.......................................................................................CTTCCCCAGGGAGACGTG.................................................................................................................................................181.000.00--------------------------------------1.00--------------------
.......................................................................................................................................................................................GAGAAAGGCAGTTCCTAT.................................................1860.677.17----0.67------------------------------------------------------
.......................................................................................................................................................................................GAGAAAGGCAGTTCCTGAG................................................1960.507.17-------------------------------------------0.33-------0.17-------
.......................................................................................................................................................................................GAGAAAGGCAGTTCCTA..................................................1760.177.17------------------------------------------------------0.17----
.......................................................................................................................................................................................GAGAAAGGCAGTTCCTGG.................................................1860.177.17---------0.17-------------------------------------------------
.......................................................................................................................................................................................GAGAAAGGCAGTTCCTGATC...............................................2060.177.17-------------0.17---------------------------------------------
.......................................................................................................................................................................................GAGAAAGGCAGTTCCTGCC................................................1960.177.17----------------------------------------------------0.17------

Antisense strand
CACAGATGCTAATGTCTTCATCACACTCTTTGGCACACAGGATGACACTGGTAAGAAAGCAGTGCAGGGCCAAGATTCACCCACATTCTTCCCCAGGGAGACCAGAAGACTCAGCAGAAATTTCCAAGGGGAATCCTAATTATGCTTTTGTCTCTCAATAGGATGCAAGCAATTAGCCCCATCGAGAAAGGCAGTTCCTTTTTTTCTAAAAATTTTCTTTTTCTCTGAGCCAGCTTTCTTTTTCTGTTCT
...................................................................................................................................................(((((((((.((.((..((((....)).)))).)).))))..)))))........................................................
...................................................................................................................................................148.......................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR037937(GSM510475)
293cand2. (cell line)
SRR343334SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR189782SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR037931(GSM510469)
293GFP. (cell line)
SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR040015(GSM532900)
G623T. (cervix)
SRR444064(SRX128912)
Sample 21cDNABarcode: AF-PP-334: ACG CTC TTC . (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR038854(GSM458537)
MM653. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR029130(GSM416759)
DLD2. (cell line)
SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)
SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR191394(GSM715504)
23genomic small RNA (size selected RNA from t. (breast)
GSM532876(GSM532876)
G547T. (cervix)
..............................................................................................AGGGAGACCAGAAGAAGAG......................................................................................................................................... 191.000.00------------------1.00----------------------------------------
...........................................................................................CCCAGGGAGACCAGAAAG............................................................................................................................................. 181.000.00------------------1.00----------------------------------------
............................................................................................................................................................................................................................TTCTCTGAGCCAGCTGCAC........... 191.000.00------------------1.00----------------------------------------
................................................................................................................................................................................................................AGAGAAAAAGAAAATTTT........................ 1890.110.11----------------------------------------------------------0.11