| (2) B-CELL | (1) BRAIN | (1) BREAST | (5) CELL-LINE | (1) FIBROBLAST | (1) HEART | (9) HELA | (5) LIVER | (3) OTHER | (7) SKIN |
| GAGAAATGCACAATTTGTCTGTCTATGCTGGAAGATGGAGAAGATGTGAGGTAGGAGACCGCCATTTTGATTCCCTCTCCCCTCTCTTATAGGTATTGGTGACCAATCACTGCACCGTGTGTCTGGGAGTTGGGGTGCTTGTTTGCTTGTGCACGTATGTGCCAAGTGTGCTATAATGTGCTTCATGGTTGCCCTGGGAAGGTGGGGTATGAAATGTTCTAGATGTGTGATGCCCGGGTACGGACGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCGTCTAAGACAAAGTTGTGGCTTTGTTTCAGGCTGATCTGAAAGCGCTTCCTGGCGGAGGCTTCATGGTTTCCCATCTCAGCCACAGCCTCCCTCCATAGCCGGGCAGTTCCCCAGGAGTCCTAGGTGTGTGTCCCTGCTCCGCTCAGTGTCCCTCAGCTCTTGCCGGGCCTCTGACTCTCCCTCCTCTCTTCCAGACGCCTACCCTGTATGCATCTCTTTCACCAACTGTGCGTGGACCAGTGGC ....................................................((.((((...(((((..((((((............(((((((...(((((....)))))..))).))))...))))))..)))))...)))).))....................................................................................................................................................................................................................................................................................................................................................................................................... ..................................................51.................................................................................................150.................................................................................................................................................................................................................................................................................................................................................................................................. | Size | Perfect hit | Total Norm | Perfect Norm | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | DRR001487(DRX001041) "Hela long nuclear cell fraction, LNA(+)". (hela) | DRR001484(DRX001038) "Hela long nuclear cell fraction, control". (hela) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | DRR001482(DRX001036) "Hela long total cell fraction, control". (hela) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | DRR001483(DRX001037) "Hela long cytoplasmic cell fraction, control. (hela) | SRR189784 | SRR037936(GSM510474) 293cand1. (cell line) | SRR039615(GSM531978) Severe Chronic Hepatitis B Liver Tissue. (liver) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039616(GSM531979) HBV(+) Distal Tissue Sample 1. (liver) | SRR330905(SRX091743) tissue: normal skindisease state: normal. (skin) | GSM359202(GSM359202) hepg2_untreated_a. (cell line) | SRR029124(GSM416753) HeLa. (hela) | SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell) | SRR330914(SRX091752) tissue: normal skindisease state: normal. (skin) | TAX577746(Rovira) total RNA. (breast) | SRR207111(GSM721073) Whole cell RNA. (cell line) | SRR189787 | GSM450601(GSM450601) miRNA sequencing raw reads from post-mortem s. (brain) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR342901(SRX096797) small RNA seq of Left atrial tissue. (heart) | SRR037876(GSM522374) fibroblasts_cell_culture. (fibroblast) | SRR039617(GSM531980) HBV(+) Adjacent Tissue Sample 1. (liver) | SRR189786 | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR330866(SRX091704) tissue: skin psoriatic involveddisease state:. (skin) | SRR330878(SRX091716) tissue: skin psoriatic involveddisease state:. (skin) | SRR033711(GSM497056) GCB DLBCL (GCB110). (B cell) | SRR330912(SRX091750) tissue: normal skindisease state: normal. (skin) | SRR330880(SRX091718) tissue: skin psoriatic involveddisease state:. (skin) | SRR330902(SRX091740) tissue: skin psoriatic uninvolveddisease stat. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCGTCTAAGACAAAGTTGTGGCTTTGTTTCAGGCTGATCTGAAA........................................................................................................................................................................................................... | 91 | 1 | 162.00 | 162.00 | 104.00 | 20.00 | - | 37.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAAT....................................................................................................................................................................................................................................................... | 47 | 1 | 141.00 | 141.00 | 4.00 | 39.00 | 87.00 | 9.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................ACGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCGTC.................................................................................................................................................................................................................................................. | 53 | 1 | 45.00 | 45.00 | 5.00 | 27.00 | 8.00 | 4.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................ACGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAAT....................................................................................................................................................................................................................................................... | 48 | 1 | 16.00 | 16.00 | 1.00 | 3.00 | 10.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................ACGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCGT................................................................................................................................................................................................................................................... | 52 | 1 | 15.00 | 15.00 | 1.00 | 9.00 | 4.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAA........................................................................................................................................................................................................................................................ | 46 | 1 | 15.00 | 15.00 | 2.00 | 10.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................ACGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCGTCTAAGACAAAGTTGTGGCTTTGTTTCAGGCTGATCTGAAA........................................................................................................................................................................................................... | 92 | 1 | 14.00 | 14.00 | 14.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................ACGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCG.................................................................................................................................................................................................................................................... | 51 | 1 | 12.00 | 12.00 | - | 7.00 | 2.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGG................................................................................................................................................................................................................................................................................. | 21 | 1 | 9.00 | 9.00 | - | - | - | - | 3.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCGTCTAAGACAAAGTTGTGGCTTTGTTTCAG....................................................................................................................................................................................................................... | 79 | 1 | 8.00 | 8.00 | 8.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................ACGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGC..................................................................................................................................................................................................................................................... | 50 | 1 | 5.00 | 5.00 | - | 2.00 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................AGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCGTCTAAGACAAAGTTGTGGCTTTGTTTCAGGCTGATCTGAAA........................................................................................................................................................................................................... | 78 | 1 | 5.00 | 5.00 | - | - | - | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................ACAGTGTGGTGTTCGGTCTGAATGCGTCTAAGACAAAGTTGTGGCTTTGTTTCAGGCTGATCTGAAA........................................................................................................................................................................................................... | 67 | 1 | 5.00 | 5.00 | - | - | - | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGAGA.............................................................................................................................................................................................................................................................................. | 24 | 1 | 3.00 | 3.00 | - | - | - | - | - | 1.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................GCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATAAA.................................................................................................................................................................................................................................................... | 49 | 1 | 3.00 | 2.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGA................................................................................................................................................................................................................................................................................ | 22 | 1 | 3.00 | 3.00 | - | - | - | - | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCGT................................................................................................................................................................................................................................................... | 51 | 1 | 3.00 | 3.00 | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................GAACAGTGTGGTGTTCGGTCTGAAT....................................................................................................................................................................................................................................................... | 25 | 1 | 3.00 | 3.00 | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................ACGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCA.................................................................................................................................................................................................................................................... | 51 | 1 | 2.00 | 5.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................ACGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCGTCTAAGACAAAGTTGTGGCTTTGTTTCAGGCTGATCTGAAAGCGC....................................................................................................................................................................................................... | 96 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCGTC.................................................................................................................................................................................................................................................. | 52 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTG..................................................................................................................................................................................................................................................................................... | 17 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGT.................................................................................................................................................................................................................................................................................... | 18 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................TGAGGTAGGAGACCGCATAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 20 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................................................................................ACGCGAGGATGAAAAGTGTAGGA................................................................................................................................................................................................................................................................................ | 23 | 1 | 2.00 | 2.00 | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................ACGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCGTCTAAGACAAAGTTGTGGCTT............................................................................................................................................................................................................................... | 72 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCG.................................................................................................................................................................................................................................................... | 50 | 1 | 2.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................TGAGGTAGGAGACCGCCTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 21 | 2.00 | 0.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCAA................................................................................................................................................................................................................................................... | 51 | 1 | 2.00 | 1.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................TCTGTCTATGCTGGAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAG....................................................................................................................................................................................................................................................................................... | 15 | 2 | 2.00 | 2.00 | - | - | - | - | 1.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................GCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAAT....................................................................................................................................................................................................................................................... | 46 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATA...................................................................................................................................................................................................................................................... | 48 | 1 | 1.00 | 141.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGT.................................................................................................................................................................................................................................................................. | 36 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................ACGCGAGGATGAAAAGTGTAGGAGAAC............................................................................................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................TGGAAGATGGAGAAGATGTGAGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 24 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................................................................................ACGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCGTA.................................................................................................................................................................................................................................................. | 53 | 1 | 1.00 | 15.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................CCTGGGAAGGTGGGGTATGAAATGTTCTAG............................................................................................................................................................................................................................................................................................................................ | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCGTCTAAGACAAAGTTGTGGCTTTGTTTCAGGCTGATC................................................................................................................................................................................................................ | 86 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGT.................................................................................................................................................................................................................................................................... | 34 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTG................................................................................................................................................................................................................................................................... | 35 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGAGAACAGT......................................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................TATGCTGGAAGATGGAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................ACGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCATC.................................................................................................................................................................................................................................................. | 53 | 1 | 1.00 | 5.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................TGGAAGATGGAGAAGATGTGAGACGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGCAT....................................................................................................................................................................................................................................................... | 47 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................ATGGAGAAGATGTGAGCTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................................................GAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAAT....................................................................................................................................................................................................................................................... | 44 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................GCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCGTC.................................................................................................................................................................................................................................................. | 51 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................CTATGCTGGAAGATGGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ....................GTCTATGCTGGAAGATGGAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTC............................................................................................................................................................................................................................................................ | 42 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................GAACAGTGTGGTGTTCGGTCTGAA........................................................................................................................................................................................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TAGGAGACCGCCATTTGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................................................................................ACGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATG...................................................................................................................................................................................................................................................... | 49 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCGA................................................................................................................................................................................................................................................... | 51 | 1 | 1.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAG.................................................................................................................................................................................................................................................................................. | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGAGAACAG.......................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................GACGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCGT................................................................................................................................................................................................................................................... | 53 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................TGGAAGATGGAGAAGCTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ...................................................................................................................................................................................................................................................ACGCGAGGATGAAAAGTGTAGGAGAACA........................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGT...................................................................................................................................................................................................................................................................................... | 16 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGAG............................................................................................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGGCCTCTGACTCTCCCTCCTCTCT....................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................AGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAA........................................................................................................................................................................................................................................................ | 33 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................ACGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAA........................................................................................................................................................................................................................................................ | 47 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................ACGCGAGGATGAAAAGTGT.................................................................................................................................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................ACAGTGTGGTGTTCGGTCTGAAT....................................................................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................CGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGC..................................................................................................................................................................................................................................................... | 49 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................ACGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCAA................................................................................................................................................................................................................................................... | 52 | 1 | 1.00 | 5.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCTCCCTCCTCTCT....................................................... | 17 | 6 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.17 |
| ................................................................................................................................................................................................................................................................................................................AGTTGTGGCTTTGTTT.......................................................................................................................................................................................................................... | 16 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GAGAAATGCACAATTTGTCTGTCTATGCTGGAAGATGGAGAAGATGTGAGGTAGGAGACCGCCATTTTGATTCCCTCTCCCCTCTCTTATAGGTATTGGTGACCAATCACTGCACCGTGTGTCTGGGAGTTGGGGTGCTTGTTTGCTTGTGCACGTATGTGCCAAGTGTGCTATAATGTGCTTCATGGTTGCCCTGGGAAGGTGGGGTATGAAATGTTCTAGATGTGTGATGCCCGGGTACGGACGCGAGGATGAAAAGTGTAGGAGAACAGTGTGGTGTTCGGTCTGAATGCGTCTAAGACAAAGTTGTGGCTTTGTTTCAGGCTGATCTGAAAGCGCTTCCTGGCGGAGGCTTCATGGTTTCCCATCTCAGCCACAGCCTCCCTCCATAGCCGGGCAGTTCCCCAGGAGTCCTAGGTGTGTGTCCCTGCTCCGCTCAGTGTCCCTCAGCTCTTGCCGGGCCTCTGACTCTCCCTCCTCTCTTCCAGACGCCTACCCTGTATGCATCTCTTTCACCAACTGTGCGTGGACCAGTGGC ....................................................((.((((...(((((..((((((............(((((((...(((((....)))))..))).))))...))))))..)))))...)))).))....................................................................................................................................................................................................................................................................................................................................................................................................... ..................................................51.................................................................................................150.................................................................................................................................................................................................................................................................................................................................................................................................. | Size | Perfect hit | Total Norm | Perfect Norm | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | DRR001487(DRX001041) "Hela long nuclear cell fraction, LNA(+)". (hela) | DRR001484(DRX001038) "Hela long nuclear cell fraction, control". (hela) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | DRR001482(DRX001036) "Hela long total cell fraction, control". (hela) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | DRR001483(DRX001037) "Hela long cytoplasmic cell fraction, control. (hela) | SRR189784 | SRR037936(GSM510474) 293cand1. (cell line) | SRR039615(GSM531978) Severe Chronic Hepatitis B Liver Tissue. (liver) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039616(GSM531979) HBV(+) Distal Tissue Sample 1. (liver) | SRR330905(SRX091743) tissue: normal skindisease state: normal. (skin) | GSM359202(GSM359202) hepg2_untreated_a. (cell line) | SRR029124(GSM416753) HeLa. (hela) | SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell) | SRR330914(SRX091752) tissue: normal skindisease state: normal. (skin) | TAX577746(Rovira) total RNA. (breast) | SRR207111(GSM721073) Whole cell RNA. (cell line) | SRR189787 | GSM450601(GSM450601) miRNA sequencing raw reads from post-mortem s. (brain) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR342901(SRX096797) small RNA seq of Left atrial tissue. (heart) | SRR037876(GSM522374) fibroblasts_cell_culture. (fibroblast) | SRR039617(GSM531980) HBV(+) Adjacent Tissue Sample 1. (liver) | SRR189786 | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR330866(SRX091704) tissue: skin psoriatic involveddisease state:. (skin) | SRR330878(SRX091716) tissue: skin psoriatic involveddisease state:. (skin) | SRR033711(GSM497056) GCB DLBCL (GCB110). (B cell) | SRR330912(SRX091750) tissue: normal skindisease state: normal. (skin) | SRR330880(SRX091718) tissue: skin psoriatic involveddisease state:. (skin) | SRR330902(SRX091740) tissue: skin psoriatic uninvolveddisease stat. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................................................................................................................GGGAAGGTGGGGTATCTA..................................................................................................................................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................TTCATGGTTGCCCTGAGG................................................................................................................................................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGGAGCAGGGACAC.................................................................................................... | 17 | 2 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................CGGCTATGGAGGGAGGC............................................................................................................................................... | 17 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................AAGTTGTGGCTTTGTTTAACC...................................................................................................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGACGCCTACCCGCCG.................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTGCTCCGCTCTG.................................................................................................. | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGCCTCTGACTCTCGTG.............................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................TGGAAGATGGAGAAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................GTGAGGTAGGAGACCGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGCGGAGCAGGGACA.................................................................................................. | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................GGCTATGGAGGGAGGC................................................................................................................................................ | 16 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - |