| (3) BREAST | (13) CELL-LINE | (1) CERVIX | (1) HELA | (1) LIVER | (1) RRP40.ip | (9) SKIN | (1) UTERUS | (1) XRN.ip |
| GAGCATTTAATATTAGATGATAATTTTTTCCCCAATTAACTGGTATTTATGGAGTTTTAAGGGTGTTTTTTTTTCTAGGCCACTGAAAACTTTCCAACCAAGGAAATTTTTTCTCATCTTGCCCTATCTAGCTACATTTTGAATATTTCCTTGGCAAAAATCATTAAGAATGACTCATTTCTCTAATTCTTCTTTTCCAGGGCACCGTTGAGCTGTTGCAACTGTTCTGCTGGTAAGTGCTTTTATGTGC ...................................................(((((.....((((.(((((((((.((....)))))))........((((((((((...(((.......((........))........))).))))))))))..)))).))))......))))).......................................................................... ..................................................51...................................................................................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR037943(GSM510481) 293DcrTN. (cell line) | SRR037944(GSM510482) 293DcrTN_cand5. (cell line) | SRR029124(GSM416753) HeLa. (hela) | SRR330864(SRX091702) tissue: skin psoriatic involveddisease state:. (skin) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037934(GSM510472) 293cand4_rep3. (cell line) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR094129(GSM651905) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR330868(SRX091706) tissue: skin psoriatic involveddisease state:. (skin) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330880(SRX091718) tissue: skin psoriatic involveddisease state:. (skin) | SRR037936(GSM510474) 293cand1. (cell line) | SRR330908(SRX091746) tissue: normal skindisease state: normal. (skin) | SRR191469(GSM715579) 117genomic small RNA (size selected RNA from . (breast) | SRR040028(GSM532913) G026N. (cervix) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR191566(GSM715676) 94genomic small RNA (size selected RNA from t. (breast) | SRR330891(SRX091729) tissue: skin psoriatic uninvolveddisease stat. (skin) | GSM416733(GSM416733) HEK293. (cell line) | SRR037931(GSM510469) 293GFP. (cell line) | SRR330887(SRX091725) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR330877(SRX091715) tissue: skin psoriatic involveddisease state:. (skin) | SRR330858(SRX091696) tissue: skin psoriatic involveddisease state:. (skin) | SRR330916(SRX091754) tissue: normal skindisease state: normal. (skin) | TAX577745(Rovira) total RNA. (breast) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR037933(GSM510471) 293cand4_rep2. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................................TTCTCTAATTCTTCTTTTCCAGA................................................. | 23 | 1 | 24.00 | 1.00 | 8.00 | 4.00 | 3.00 | - | - | - | 2.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | - | - | - | - |
| .................................................................................................................................................................................TTTCTCTAATTCTTCTTTTCCAGA................................................. | 24 | 12.00 | 0.00 | - | 2.00 | - | 1.00 | - | 1.00 | - | 2.00 | - | 2.00 | 1.00 | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| .................................................................................................................................................................................TTTCTCTAATTCTTCTTTTCCAGAA................................................ | 25 | 5.00 | 0.00 | 4.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TTCTCTAATTCTTCTTTTCCAGAA................................................ | 24 | 1 | 3.00 | 1.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ................................................................................................................................................................................ATTTCTCTAATTCTTCTTTTCCAGAA................................................ | 26 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................AGGGTGTTTTTTTTTATCA............................................................................................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................TTTCTCTAATTCTTCTTTTCCATAA................................................ | 25 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | |
| ...........................................................................................................................................................................................TCTTCTTTTCCAGGGCACCGTTGAGCTG................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........TATTAGATGATAATTTTC.............................................................................................................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................AGGGTGTTTTTTTTTGC.............................................................................................................................................................................. | 17 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................TTTCTCTAATTCTTCTTTTCAAGA................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................AAGGGTGTTTTTTTTTGCT............................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................TTTCTCTAATTCTTCTTTTCCAGC................................................. | 24 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TTCTCTAATTCTTCTTTTCCAG.................................................. | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................................................AGGGTGTTTTTTTTTCTCTT........................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TTCTCTAATTCTTCTTTTCCATA................................................. | 23 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................TTTCTCTAATTCTTCTTTTC..................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................TTTCTCTAATTCTTCTTTTCCATA................................................. | 24 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GAGCATTTAATATTAGATGATAATTTTTTCCCCAATTAACTGGTATTTATGGAGTTTTAAGGGTGTTTTTTTTTCTAGGCCACTGAAAACTTTCCAACCAAGGAAATTTTTTCTCATCTTGCCCTATCTAGCTACATTTTGAATATTTCCTTGGCAAAAATCATTAAGAATGACTCATTTCTCTAATTCTTCTTTTCCAGGGCACCGTTGAGCTGTTGCAACTGTTCTGCTGGTAAGTGCTTTTATGTGC ...................................................(((((.....((((.(((((((((.((....)))))))........((((((((((...(((.......((........))........))).))))))))))..)))).))))......))))).......................................................................... ..................................................51...................................................................................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR037943(GSM510481) 293DcrTN. (cell line) | SRR037944(GSM510482) 293DcrTN_cand5. (cell line) | SRR029124(GSM416753) HeLa. (hela) | SRR330864(SRX091702) tissue: skin psoriatic involveddisease state:. (skin) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037934(GSM510472) 293cand4_rep3. (cell line) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR094129(GSM651905) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR330868(SRX091706) tissue: skin psoriatic involveddisease state:. (skin) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330880(SRX091718) tissue: skin psoriatic involveddisease state:. (skin) | SRR037936(GSM510474) 293cand1. (cell line) | SRR330908(SRX091746) tissue: normal skindisease state: normal. (skin) | SRR191469(GSM715579) 117genomic small RNA (size selected RNA from . (breast) | SRR040028(GSM532913) G026N. (cervix) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR191566(GSM715676) 94genomic small RNA (size selected RNA from t. (breast) | SRR330891(SRX091729) tissue: skin psoriatic uninvolveddisease stat. (skin) | GSM416733(GSM416733) HEK293. (cell line) | SRR037931(GSM510469) 293GFP. (cell line) | SRR330887(SRX091725) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR330877(SRX091715) tissue: skin psoriatic involveddisease state:. (skin) | SRR330858(SRX091696) tissue: skin psoriatic involveddisease state:. (skin) | SRR330916(SRX091754) tissue: normal skindisease state: normal. (skin) | TAX577745(Rovira) total RNA. (breast) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR037933(GSM510471) 293cand4_rep2. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................................TTTTGAATATTTCCTGAG................................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| ....................................................................................................................................................................................................................CTGTTGCAACTGTTCTCG.................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............AGATGATAATTTTTTTCC.......................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |