ID: uc002lad.2_intron_0_0_chr18_34647509_f.5p
GENE: (1)
chr18:34647459-34647708+


(4)
AGO2.ip
(3)
B-CELL
(4)
BRAIN
(2)
BREAST
(23)
CELL-LINE
(4)
CERVIX
(2)
HEART
(2)
HELA
(4)
LIVER
(1)
OTHER
(10)
SKIN
(1)
XRN.ip

Sense strand
CTTCTTCTAAAACAGCAGCAGCTTCACCAGTCTCGACTGGATTACAATTGGTGAGTACTGCCTGTTCTTTTTTTTTTTTTTTTGAGACGAAATCTCGCCCTGTTGCCCAGGCTGGAGTGTAGTGGCACAATCTCAGCTCACTGCAGCCTCCGCCTCCCGAGTTCAAGCAGTTCTCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCCGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGA
..................................................(((..((((((((....................((((.....))))..((((.....))))....)).)))))).)))..........................................................................................................................
..................................................51.............................................................................130......................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM532874(GSM532874)
G699T. (cervix)
SRR189786SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR040019(GSM532904)
G701T. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
GSM416733(GSM416733)
HEK293. (cell line)
GSM956925PAZD5SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR040031(GSM532916)
G013T. (cervix)
SRR037931(GSM510469)
293GFP. (cell line)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR038860(GSM458543)
MM426. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
....................................................................................................................................................................AAGCAGTTCTCTGCCTCAGCCTCCCCCC..........................................................282.000.002.00---------------------------------------------------------
...........................................................................................................................................................................................................ACAGGCGCCCGCCACCATGCCCGGCGG....................272.000.002.00---------------------------------------------------------
.................................................................................................................................ATCTCAGCTCACTGCAGCCTCCGCCCTGG............................................................................................292.000.00-2.00--------------------------------------------------------
......................................................................................................TTGCCCAGGCTGGAGTGTAGGAGG............................................................................................................................242.000.002.00---------------------------------------------------------
.......................................................TACTGCCTGTTCTTTTAAGG...............................................................................................................................................................................202.000.00-2.00--------------------------------------------------------
......................................................................................................................................AGCTCACTGCAGCCTCCGCCCAGG............................................................................................242.000.002.00---------------------------------------------------------
.................................................................................................................................ATCTCAGCTCACTGCAGCCTCCGCCTGTG............................................................................................292.000.002.00---------------------------------------------------------
....................................................................................................................................TCAGCTCACTGCAGCCTCCGCCTGGG............................................................................................262.000.002.00---------------------------------------------------------
..................................................................................................................................TCTCAGCTCACTGCAGCCTCCGCCTCCACG..........................................................................................301.000.001.00---------------------------------------------------------
......................................................................................................TTGCCCAGGCTGGAGTGTAGTGGCACAGCCA.....................................................................................................................311.000.001.00---------------------------------------------------------
...........................................................................................................................................................................................................ACAGGCGCCCGCCACCATGCCCGGCTCTG..................291.000.001.00---------------------------------------------------------
.................................................................TCTTTTTTTTTTTTTTTTGAGCTT.................................................................................................................................................................241.000.001.00---------------------------------------------------------
..........................................................TGCCTGTTCTTTTTTTTTTAGG..........................................................................................................................................................................221.000.001.00---------------------------------------------------------
.......................................................................................................TGCCCAGGCTGGAGTGTAGTGGATA..........................................................................................................................251.000.00----------------------1.00-----------------------------------
.............................................................CTGTTCTTTTTTTTTTTTTTAGCC.....................................................................................................................................................................241.000.001.00---------------------------------------------------------
..........................................................TGCCTGTTCTTTTTTTTCCTG...........................................................................................................................................................................211.000.001.00---------------------------------------------------------
..........................................................................................................................................................................TTCTCTGCCTCAGCCTCCCGTT..........................................................221.000.00------------------------1.00---------------------------------
...........................................................................................................................................ACTGCAGCCTCCGCCCATG............................................................................................191.000.00-1.00--------------------------------------------------------
.............................................................CTGTTCTTTTTTTTTGCTC..........................................................................................................................................................................191.000.001.00---------------------------------------------------------
.................................................................TCTTTTTTTTTTTTTTTTGAGCCGT................................................................................................................................................................251.000.00-1.00--------------------------------------------------------
........................................................................................................................................................................................................ATTACAGGCGCCCGCCACCAGGG...........................231.000.00-------------------------------------------------------1.00--
...................................................................................................CTGTTGCCCAGGCTGGAGTGTAGTGGAGGG.........................................................................................................................301.000.00--------------------------------------1.00-------------------
..............................................................................................................................................................................................................................CCCGGCTAATTTTTGTATTTAGGA....241.000.00------------------------------1.00---------------------------
.........................................................CTGCCTGTTCTTTTTTTTTG.............................................................................................................................................................................201.000.00-----------------1.00----------------------------------------
.......................................................................................................TGCCCAGGCTGGAGTGTAGCGCG............................................................................................................................231.000.001.00---------------------------------------------------------
.........................................................CTGCCTGTTCTTTTTTTTTTTTTTTG.......................................................................................................................................................................261.000.00------------------1.00---------------------------------------
..........................................................TGCCTGTTCTTTTTTTTCCT............................................................................................................................................................................201.000.001.00---------------------------------------------------------
..............................................................................................................................................................................................................GGCGCCCGCCACCATGCCCGAAG.....................231.000.00------------1.00---------------------------------------------
...........................................................................................................................................ACTGCAGCCTCCGCCTCCCGAGCCC......................................................................................251.000.00-1.00--------------------------------------------------------
...........................................................................................................................................................................................................ACAGGCGCCCGCCACCATGCCAGGG......................251.000.001.00---------------------------------------------------------
........................................................................................................GCCCAGGCTGGAGTGTAGTGGAAAG.........................................................................................................................251.000.001.00---------------------------------------------------------
.....TCTAAAACAGCAGCAGCTTCAC...............................................................................................................................................................................................................................2211.001.00---------------------------------------------------1.00------
..............................................................TGTTCTTTTTTTTTTTTTTTTGGG....................................................................................................................................................................241.000.001.00---------------------------------------------------------
.............................................................................................................................................................................................................AGGCGCCCGCCACCATGCCCGGGCA....................251.000.001.00---------------------------------------------------------
..............................................................................................................................ACAATCTCAGCTCACTGCAGCTAGG...................................................................................................251.000.001.00---------------------------------------------------------
......................................................................................................TTGCCCAGGCTGGAGTGTAGCGCT............................................................................................................................241.000.00-1.00--------------------------------------------------------
......................................................................................................................................AGCTCACTGCAGCCTCCGCCTGGGT...........................................................................................251.000.001.00---------------------------------------------------------
....................................................................................................................................................................................................................CGCCACCATGCCCGGCTAATTTCGC.............251.000.001.00---------------------------------------------------------
......................................................................................................TTGCCCAGGCTGGAGTGTAGTGGATCG.........................................................................................................................271.000.00-1.00--------------------------------------------------------
.................................................................................................................................................................................................AGCTGGGATTACAGGCGCCCGCCACCATGCGGC........................331.000.001.00---------------------------------------------------------
..................................................................................................CCTGTTGCCCAGGCTGGAGGCAC.................................................................................................................................231.000.001.00---------------------------------------------------------
..........................................................TGCCTGTTCTTTTTTTTTTTTTTTTCAGG...................................................................................................................................................................291.000.001.00---------------------------------------------------------
...................................................................TTTTTTTTTTTTTTTTGAGACGAAAGC............................................................................................................................................................271.000.00-1.00--------------------------------------------------------
..........................................................................................................................................................................................................TACAGGCGCCCGCCACCATGCCCGGCGG....................281.000.001.00---------------------------------------------------------
............................................................................................TCTCGCCCTGTTGCCCAGGCTGGAGGGTG.................................................................................................................................291.000.001.00---------------------------------------------------------
..............................................................TGTTCTTTTTTTTTTTTTTTTGGTAG..................................................................................................................................................................261.000.00-1.00--------------------------------------------------------
....................................................................................................TGTTGCCCAGGCTGGAGTGTAGTGGGAAG.........................................................................................................................291.000.00-------1.00--------------------------------------------------
....................................................................................................TGTTGCCCAGGCTGGAGTGTAGCGCT............................................................................................................................261.000.001.00---------------------------------------------------------
.........................................................................................................................................TCACTGCAGCCTCCGCCCCAG............................................................................................211.000.00-1.00--------------------------------------------------------
....................................................................................................................................................................................................................CGCCACCATGCCCGGCTAATTTTCACC...........271.000.00---------1.00------------------------------------------------
....................................................................................................................................TCAGCTCACTGCAGCCTCCGCCTGGGT...........................................................................................271.000.001.00---------------------------------------------------------
.....................................................................................................................................................................AGCAGTTCTCTGCCTCAGCCCCA..............................................................231.000.00-1.00--------------------------------------------------------
.............................................................................................................................................................................................................AGGCGCCCGCCACCATGCCCGGCTAACCGG...............301.000.001.00---------------------------------------------------------
..............................................................TGTTCTTTTTTTTTTTTTTTTGTTC...................................................................................................................................................................251.000.001.00---------------------------------------------------------
...........................................................................................................CAGGCTGGAGTGTAGTGGCACAATAA.....................................................................................................................261.000.00------------------------------------------------------1.00---
...................................................................................................................................................................................................................CCGCCACCATGCCCGGCTAAGTC................231.000.00---------1.00------------------------------------------------
................................................................TTCTTTTTTTTTTTTTTTTGAGCAGC................................................................................................................................................................261.000.001.00---------------------------------------------------------
.............................................................................................................................................................................TCTGCCTCAGCCTCCCGAGTAGCCCGG..................................................271.000.001.00---------------------------------------------------------
...........................................................................................................................................ACTGCAGCCTCCGCCTGGGC...........................................................................................201.000.001.00---------------------------------------------------------
....................................................................................................TGTTGCCCAGGCTGGAGTGTAGTCGTC...........................................................................................................................271.000.001.00---------------------------------------------------------
................................................................TTCTTTTTTTTTTTTTTTTGAGCGG.................................................................................................................................................................251.000.001.00---------------------------------------------------------
..........................................................................................................................................................................................................TACAGGCGCCCGCCACCATGCCCGCCC.....................271.000.001.00---------------------------------------------------------
...........................................................................................................................................ACTGCAGCCTCCGCCTCCCGAGTCC......................................................................................251.000.001.00---------------------------------------------------------
............................................................................................................................................................................................................CAGGCGCCCGCCACCATGCCCCCC......................241.000.00-1.00--------------------------------------------------------
..........................................................................................................CCAGGCTGGAGTGTAGTGGCAGGGG.......................................................................................................................251.000.00------------1.00---------------------------------------------
.................................................................TCTTTTTTTTTTTTTTTTGAGCGG.................................................................................................................................................................241.000.001.00---------------------------------------------------------
..........................................................TGCCTGTTCTTTTTTTTTAGG...........................................................................................................................................................................211.000.00-1.00--------------------------------------------------------
......................................................................................................................................AGCTCACTGCAGCCTCCGCCGGGT............................................................................................241.000.001.00---------------------------------------------------------
.......................................................................................................TGCCCAGGCTGGAGTGTAGCGGG............................................................................................................................231.000.00-1.00--------------------------------------------------------
.....................................................................................................................................................................AGCAGTTCTCTGCCTCAGCCCCCG.............................................................241.000.001.00---------------------------------------------------------
............................................................................................................................................................................................................CAGGCGCCCGCCACCATGCCCGCTG.....................251.000.001.00---------------------------------------------------------
........................................................................................................GCCCAGGCTGGAGTGTATTTG.............................................................................................................................211.000.00-------------1.00--------------------------------------------
..........................................................TGCCTGTTCTTTTTTTTTTTTTGAG.......................................................................................................................................................................251.000.00-1.00--------------------------------------------------------
................................................................................................................................................................................................TAGCTGGGATTACAGGCGCCCGCCAAGTT.............................291.000.00---------1.00------------------------------------------------
..............................................................................................................GCTGGAGTGTAGTGGCAGGGG.......................................................................................................................211.000.00-------1.00--------------------------------------------------
..............................................................................................................GCTGGAGTGTAGTGGCACATA.......................................................................................................................211.000.00-------1.00--------------------------------------------------
............................................................................................................AGGCTGGAGTGTAGTGGCACA.........................................................................................................................2101.001.00------1.00---------------------------------------------------
......................................................................................................................................AGCTCACTGCAGCCTCCGCCTGGG............................................................................................241.000.001.00---------------------------------------------------------
..........................................................TGCCTGTTCTTTTTTTTTTTTTTTAG......................................................................................................................................................................261.000.001.00---------------------------------------------------------
...................................................................................................CTGTTGCCCAGGCTGGAGTGTATTGA.............................................................................................................................261.000.00----1.00-----------------------------------------------------
......................................................................................................TTGCCCAGGCTGGAGTGTAGTGGCTCTG........................................................................................................................281.000.001.00---------------------------------------------------------
........................................................................................................................................................................AGTTCTCTGCCTCAGCCTCCCCG...........................................................231.000.001.00---------------------------------------------------------
.....................................................................................................................................................................AGCAGTTCTCTGCCTCAGCCCCGG.............................................................241.000.00-1.00--------------------------------------------------------
....................................................................................................................................................................................................................CGCCACCATGCCCGGCTTTGT.................211.000.00-1.00--------------------------------------------------------
......................................................................................................TTGCCCAGGCTGGAGTGTAGCGTT............................................................................................................................241.000.001.00---------------------------------------------------------
......................................................................................................................................AGCTCACTGCAGCCTCCGCCCCAG............................................................................................241.000.001.00---------------------------------------------------------
...........................................................................................................................................ACTGCAGCCTCCGCCTGGGG...........................................................................................201.000.001.00---------------------------------------------------------
......................................................................................................TTGCCCAGGCTGGAGTGTAGTGGCACACCT......................................................................................................................301.000.001.00---------------------------------------------------------
......................................................................................................TTGCCCAGGCTGGAGTGTAGGCAT............................................................................................................................241.000.001.00---------------------------------------------------------
.........................................................CTGCCTGTTCTTTTTTTTTTTTG..........................................................................................................................................................................231.000.00-----------------1.00----------------------------------------
.....................................................................................................................................................................AGCAGTTCTCTGCCTCAGCCTGGA.............................................................241.000.00-1.00--------------------------------------------------------
.............................................................................TTTTTTGAGACGAAACGG...........................................................................................................................................................181.000.001.00---------------------------------------------------------
............................................................CCTGTTCTTTTTTTTTTTTTTTTG......................................................................................................................................................................2460.170.17------------------0.17---------------------------------------
............................................................CCTGTTCTTTTTTTTTTTTTTTTGCG....................................................................................................................................................................2660.170.17---------------------------------------------------------0.17

Antisense strand
CTTCTTCTAAAACAGCAGCAGCTTCACCAGTCTCGACTGGATTACAATTGGTGAGTACTGCCTGTTCTTTTTTTTTTTTTTTTGAGACGAAATCTCGCCCTGTTGCCCAGGCTGGAGTGTAGTGGCACAATCTCAGCTCACTGCAGCCTCCGCCTCCCGAGTTCAAGCAGTTCTCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCCGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGA
..................................................(((..((((((((....................((((.....))))..((((.....))))....)).)))))).)))..........................................................................................................................
..................................................51.............................................................................130......................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM532874(GSM532874)
G699T. (cervix)
SRR189786SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR040019(GSM532904)
G701T. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
GSM416733(GSM416733)
HEK293. (cell line)
GSM956925PAZD5SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR040031(GSM532916)
G013T. (cervix)
SRR037931(GSM510469)
293GFP. (cell line)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR038860(GSM458543)
MM426. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
........................................................................................................................................................................AGTTCTCTGCCTCAGCTG................................................................ 183.000.00---------------2.00------------1.00-----------------------------
.......................................................................................................................................GCTCACTGCAGCCTCCGCCTCCCGAGTCAGC.................................................................................... 312.000.002.00---------------------------------------------------------
..................................................................................................................................................................................................................CCCGCCACCATGCCCGGCTAATGCCC.............. 262.000.00-2.00--------------------------------------------------------
.........................................................................................................................................................................GTTCTCTGCCTCAGCCTCCCGACTG........................................................ 252.000.00-----------2.00----------------------------------------------
............................................................................................................................................................................................................CAGGCGCCCGCCACCATGCCCGGCTCAGG................. 292.000.002.00---------------------------------------------------------
.........GTCGAGACTGGTGAAGCTGCTGCTGTTT..................................................................................................................................................................................................................... 2812.002.00----2.00-----------------------------------------------------
..............................................................................................................................................................................................................GGCGCCCGCCACCATGCCCGGCTAATCC................ 282.000.001.001.00--------------------------------------------------------
.............................................................................................................................................................................TCTGCCTCAGCCTCCCGAGTCTGC..................................................... 242.000.00-2.00--------------------------------------------------------
.........................................................................................................................................................................................................TTACAGGCGCCCGCCACAA.............................. 192.000.00--------------------------------1.00---1.00---------------------
.......................................................................................................................................................................AGGCTGAGGCAGAGAACTG................................................................ 1901.001.00------1.00---------------------------------------------------
.....................................................................................................................................................TTGAACTCGGGAGGCGG.................................................................................... 1701.001.00-----1.00----------------------------------------------------
.......................................................................................................................................GCTCACTGCAGCCTCCGCCTCCCGAGTTCCGG................................................................................... 321.000.00--------------1.00-------------------------------------------
................................................................................................................................................................................................................CGCCCGCCACCATGCCCGGCTAAAACG............... 271.000.00-1.00--------------------------------------------------------
.......................................................................................................................................................................CAGTTCTCTGCCTCAGCTAA............................................................... 201.000.00----------------------------------1.00-----------------------
................................................................................................GCCCTGTTGCCCAGGCTGGTGGG................................................................................................................................... 231.000.00-----------------------------1.00----------------------------
......................................................................................................................................................GCTTGAACTCGGGAGGCG.................................................................................. 1801.001.00---1.00------------------------------------------------------
............................................................................................................................................CTGCAGCCTCCGCCTCCCGAGTGGAG.................................................................................... 261.000.001.00---------------------------------------------------------
........................................................................................................................................CTCACTGCAGCCTCCGCAGAA............................................................................................. 211.000.00----1.00-----------------------------------------------------
.........................................................................................................................................TCACTGCAGCCTCCGCCTCCCGAGTTACC.................................................................................... 291.000.001.00---------------------------------------------------------
..............................................................................................................................................................................................................GGCGCCCGCCACCATGCCCGGCTAGC.................. 261.000.00-1.00--------------------------------------------------------
.....................................................................................................................................CAGCTCACTGCAGCCTCCGCCTGGAC........................................................................................... 261.000.00-1.00--------------------------------------------------------
................................................................................................................................................................................................................CGCCCGCCACCATGCCCGGCTGCCG................. 251.000.00-1.00--------------------------------------------------------
......................................................................................................................................GAGGCGGAGGCTGCAGTGAGCT.............................................................................................. 2201.001.00--------1.00-------------------------------------------------
.......................................................................................................................................GCTCACTGCAGCCTCCGCCTCCCGAGTTAGAG................................................................................... 321.000.001.00---------------------------------------------------------
...............................................................................................................................................CAGCCTCCGCCTCCCGAGTTGAGC................................................................................... 241.000.00-1.00--------------------------------------------------------
........................................................................................................................................CTCACTGCAGCCTCCGCCAAAA............................................................................................ 221.000.00--------------------------------------------------1.00-------
..................................................................................................................................................CTCGGGAGGCGGAGG......................................................................................... 1501.001.00---1.00------------------------------------------------------
..............................................................................................................................................................................................................GGCGCCCGCCACCATGCCCGGCTCC................... 251.000.001.00---------------------------------------------------------
..............................................................................................................................................GCAGCCTCCGCCTCCCGAGAGC...................................................................................... 221.000.001.00---------------------------------------------------------
..................................................................................................................................................................................................................CCCGCCACCATGCCCGGCTAATTGTTC............. 271.000.00-1.00--------------------------------------------------------
...............................................................................................................................................................................................................GCGCCCGCCACCATGCCCGGCTAAGG................. 261.000.001.00---------------------------------------------------------
............................................................................................TCTCGCCCTGTTGCCCAGGCTGGAGTGTACCCC............................................................................................................................. 331.000.001.00---------------------------------------------------------
..................................................................................................................................................................................................TGGTGGCGGGCGCCTGTAATCCCAGC.............................. 2601.001.00---1.00------------------------------------------------------
.........................................................................................................................................................................................................................CCATGCCCGGCTAATTAAA.............. 191.000.00--------------------1.00-------------------------------------
..............................................................................................................................................................................................................CCGGGCATGGTGGCGGGCGCC....................... 2101.001.00-----1.00----------------------------------------------------
....................................................................................................................................................TTGAACTCGGGAGGCGGA.................................................................................... 1801.001.00--1.00-------------------------------------------------------
........................................................................................................................................CTCACTGCAGCCTCCGACCA.............................................................................................. 201.000.00-------------------------------------------------1.00--------
................................................................................................................................................................................................................CGCCCGCCACCATGCCCGGCTTCGG................. 251.000.001.00---------------------------------------------------------
..................................................................................................................................GCGGAGGCTGCAGTGAGCTGAGA................................................................................................. 2301.001.00--------1.00-------------------------------------------------
..........................................................................................................................................................................................CCCGAGTAGCTGGGATTACAGGCGT....................................... 251.000.00-----------------------1.00----------------------------------
..........................................................................................................................................CACTGCAGCCTCCGCCTGGA............................................................................................ 201.000.00--------------------------------------------1.00-------------
............................................................................................................................CTGCAGTGAGCTGAGATTGTGC........................................................................................................ 2201.001.00---------------------------------1.00------------------------
......................................................................................................................................................CTTGAACTCGGGAGGCG................................................................................... 1701.001.00------1.00---------------------------------------------------
................................................................................................................................................................................................................CGCCCGCCACCATGCCCGGCTAGT.................. 241.000.00-1.00--------------------------------------------------------
..........................................................................................................................................................................TTCTCTGCCTCAGCCTCCCGAGTACGC..................................................... 271.000.00-1.00--------------------------------------------------------
.................................................................................................................................................................................................................GCCCGCCACCATGCCCGGCTAATTCGC.............. 271.000.00-1.00--------------------------------------------------------
................................................................................................................................................................................................................CGCCCGCCACCATGCCCGGCTAAGCCG............... 271.000.001.00---------------------------------------------------------
..................................................................................................................................................................................................GCTGGGATTACAGGCGCCCGACCC................................ 241.000.00-1.00--------------------------------------------------------
................................................................................................................................................................................................................CGCCCGCCACCATGCCCGGCTAATTTGCC............. 291.000.00-1.00--------------------------------------------------------
...........................................................................................................................................ACTGCAGCCTCCGCCTCTTA........................................................................................... 201.000.00-1.00--------------------------------------------------------
............................................................................................................................................................CCGAGTTCAAGCAGTTCTCT.......................................................................... 201.000.00----------------1.00-----------------------------------------
................................................................................................GCCCTGTTGCCCAGGCTGGACGTA.................................................................................................................................. 241.000.00-1.00--------------------------------------------------------
...........................................................................................................................................................................................CCGAGTAGCTGGGATTACAGGCGACGG.................................... 271.000.00---------------------------1.00------------------------------
.............................................................................................CTCGCCCTGTTGCCCAGTCAC........................................................................................................................................ 211.000.00----------------1.00-----------------------------------------
...............................................................................................................................................CAGCCTCCGCCTCCCGAGTTCAGAG.................................................................................. 251.000.00-1.00--------------------------------------------------------
.........................................................................................................................................TCACTGCAGCCTCCGCCTCCCGAGTACCA.................................................................................... 291.000.00-1.00--------------------------------------------------------
.......................................................................................................................................GCTCACTGCAGCCTCCGCCTCCCGAGTTAG..................................................................................... 301.000.001.00---------------------------------------------------------
..............................................................................................................................................................................CTGCCTCAGCCTCCCGAGTAGCTGGGATCCG............................................. 311.000.001.00---------------------------------------------------------
...............................................................................................................................................CAGCCTCCGCCTCCCGAGTTGACG................................................................................... 241.000.00-1.00--------------------------------------------------------
............................................................................................................................................CTGCAGCCTCCGCCTCCCGAGTGAG..................................................................................... 251.000.001.00---------------------------------------------------------
..................................................................................................................................................................................................................CCCGCCACCATGCCCGGCGGAG.................. 221.000.00-1.00--------------------------------------------------------
...................................................................................................................................................................................................................CCGCCACCATGCCCGGCTCGTC................. 221.000.001.00---------------------------------------------------------
.....................................................................................................................................CAGCTCACTGCAGCCTCCGCGGAC............................................................................................. 241.000.001.00---------------------------------------------------------
............................................................................................................................................CTGCAGCCTCCGCCTCCCGAGTTGG..................................................................................... 251.000.00----------1.00-----------------------------------------------
...........................................................................................................................................................................TCTCTGCCTCAGCCTCCCGAGTA........................................................ 231.000.00---------------------------------------1.00------------------
........................................................................................................................................................CCTCCCGAGTTCAAGCAGTTTC............................................................................ 221.000.001.00---------------------------------------------------------
.......................................................................................................................................GCTCACTGCAGCCTCCGCCTCCCGAGTCAAT.................................................................................... 311.000.001.00---------------------------------------------------------
.................................................................................................................................................GCCTCCGCCTCCCGAGTACAG.................................................................................... 211.000.00-1.00--------------------------------------------------------
...............................................................................................................................................................................................................GCGCCCGCCACCATGCCCGGCTACGC................. 261.000.001.00---------------------------------------------------------
............................................................................................................................................................................................................CCGGGCATGGTGGCGGGCGCCTG....................... 2301.001.00-----1.00----------------------------------------------------
...........................................................................................................................................................................................................ACAGGCGCCCGCCACCCCAT........................... 201.000.00----------------------------------------1.00-----------------
....................................................................................................................................................................................................................CGCCACCATGCCCGGCTAACC................. 211.000.00-1.00--------------------------------------------------------
.................................................................................................................................................GCCTCCGCCTCCCGAGTCAG..................................................................................... 201.000.00-1.00--------------------------------------------------------
.............................................................................................................GGCTGGAGTGTAGTGGCAGGAC....................................................................................................................... 221.000.00-1.00--------------------------------------------------------
..........................................................................................................................................................................................CCCGAGTAGCTGGGATTACACGT......................................... 231.000.00-----------------------------------1.00----------------------
.......................................................................................................................................................................CAGTTCTCTGCCTCAGCCTAA.............................................................. 211.000.00----------------------------------------------------1.00-----
......................................................................................................................................................................................GCCTCCCGAGTAGCTGGGATTACAGGCGCGTA.................................... 321.000.00------------------------------------------1.00---------------
.............................................................................................................GGCTGGAGTGTAGTGGCACAATGGAC................................................................................................................... 261.000.00-1.00--------------------------------------------------------
..................................................................................................................................................................................................................CCCGCCACCATGCCCGGCTAATTGTCC............. 271.000.00-1.00--------------------------------------------------------
..............................................................................................................................................................................................................GGCGCCCGCCACCATGCCCGGCTACC.................. 261.000.00-1.00--------------------------------------------------------
..........................................................................................................................................CACTGCAGCCTCCGCCGCG............................................................................................. 191.000.00-------------------1.00--------------------------------------
............................................................................................TCTCGCCCTGTTGCCCAGGCTGGAGTGTCCCG.............................................................................................................................. 321.000.001.00---------------------------------------------------------
..............................................................................................................................................................................................................GGCGCCCGCCACCATGCCCGGCTAATCGC............... 291.000.00-1.00--------------------------------------------------------
..................................................................................................................................................CCTCCGCCTCCCGAGTTCAAGGGC................................................................................ 241.000.00-------------------------1.00--------------------------------
...................................................................................................................................................CTCCGCCTCCCGAGTTCAAGCCC................................................................................ 231.000.00--------------------------------------------------------1.00-
................................................................................................................TGGAGTGTAGTGGCACCCA....................................................................................................................... 191.000.00----------------------------------------------1.00-----------
...............................................................................................................................................................................................................CGGGCATGGTGGCGGGCGC........................ 1901.001.00--------1.00-------------------------------------------------
....................................................................................................................................................................................................................CGCCACCATGCCCGGCTACTG................. 211.000.001.00---------------------------------------------------------
.............................................................................................................GGCTGGAGTGTAGTGGCACAGGGC..................................................................................................................... 241.000.001.00---------------------------------------------------------
..................................................................................................................................................................................................................CCCGCCACCATGCCCGGCTAAGCCC............... 251.000.00-1.00--------------------------------------------------------
..............................................................................................................................................GCAGCCTCCGCCTCCCAGC......................................................................................... 191.000.00-------------1.00--------------------------------------------
...........................................................................................................................................................................................................ACAGGCGCCCGCCACCATGCCCGGCTAATCGG............... 321.000.00-------------------------------------1.00--------------------
.......................................................................................................................................GCTCACTGCAGCCTCCGCCTCCCGAGTCTAG.................................................................................... 311.000.001.00---------------------------------------------------------
............................................................................................TCTCGCCCTGTTGCCCAGGG.......................................................................................................................................... 201.000.00--------------------------1.00-------------------------------
...................................................................................................................................................................................................................CCGCCACCATGCCCGGCTAATTTTT.............. 251.000.00--------------1.00-------------------------------------------
.............................................................................................CTCGCCCTGTTGCCCGAGG.......................................................................................................................................... 191.000.00----------1.00-----------------------------------------------
......................................................................................................................................................CGCCTCCCGAGTTCAAGCAA................................................................................ 201.000.00--1.00-------------------------------------------------------
..........................................................................................................................................................................................GTGGCGGGCGCCTGTAATCCCAGCTACTCGGG................................ 3201.001.00--1.00-------------------------------------------------------
..................................................................................................................................................................................................................CCCGCCACCATGCCCGGCTAATTGTC.............. 261.000.00-1.00--------------------------------------------------------
........................................................................................................................................................................AGTTCTCTGCCTCAGCCTCCCGAGTACTG..................................................... 291.000.00-----------------------------------------------------1.00----
...............................................................................................................................................................................................................GGGCATGGTGGCGGGCGC......................... 1801.001.00-------------------------------------------1.00--------------
...............................................................................................................................................CAGCCTCCGCCTCCCGAGTGAA..................................................................................... 221.000.00-1.00--------------------------------------------------------
...................................................................................................................................CTCAGCTCACTGCAGCCTCCGCCTCTTG........................................................................................... 281.000.00-1.00--------------------------------------------------------
............................................................................................................................................................................AGCTACTCGGGAGGCTGAGGCAGAG..................................................... 2501.001.00---------------------------------------------1.00------------
......................................................................................................................................................................................................TGGTGGCGGGCGCCTGTAATCC.............................. 2201.001.00--1.00-------------------------------------------------------
.......................................................................................................................................GCTCACTGCAGCCTCCGCCTCCCGAGTTCAA.................................................................................... 311.000.001.00---------------------------------------------------------
............................................................................................................................................................................CTACTCGGGAGGCTGAGGCAGAG....................................................... 2301.001.00-------------------------------1.00--------------------------
....................................................................................................................................................................................................................CGCCACCATGCCCGGCAAAA.................. 201.000.00-----------------------------------------------1.00----------
...................................................................................................................................................CTCCGCCTCCCGAGTTCAAGCTAT............................................................................... 241.000.00---------------------1.00------------------------------------
........................................................................................................................................CTCACTGCAGCCTCCGCACC.............................................................................................. 201.000.00-1.00--------------------------------------------------------
...................................................................................................................................................................................................................CCGCCACCATGCCCGGCTAATTTTTTCT........... 281.000.00------------------------------------------------1.00---------
.......................................................................................................................................GCTCACTGCAGCCTCCGCCTCCCGAGTAG...................................................................................... 291.000.00-1.00--------------------------------------------------------
..........................................................................................................................................................................CGGGAGGCTGAGGCAGAGAA............................................................ 2001.001.00---1.00------------------------------------------------------
...............................................................................................................................................................................................................GCGCCCGCCACCATGCCCGGCTAATAA................ 271.000.00-----------------------------------------1.00----------------
..............................................................................................................................................................AGGCTGAGGCAGAGAACTGCTTGAACTC................................................................ 2880.120.12-0.12--------------------------------------------------------