ID: uc002kzp.2_intron_0_0_chr18_33760354_r.5p
GENE: (1)
chr18:33766998-33767247-


(2)
AGO2.ip
(2)
B-CELL
(1)
BRAIN
(12)
BREAST
(9)
CELL-LINE
(2)
CERVIX
(1)
HEART
(2)
HELA
(6)
LIVER
(1)
OTHER
(1)
RRP40.ip
(42)
SKIN
(2)
UTERUS

Sense strand
GTTCAAGTTTAGCTATGTCTCGCGGAGAGGCCGGTGGAAGAAGCAACGAGGTGATCTTTCCTGCTTGGCATCGGCATCCTGGAACCCCGCGACCCTCCTCCTCGCAGGGGTCTCGGGACCCTCACCCTCTCAAGCGGGAACCGGCGTCTGGCGGGGGCGGGGGTGGGGGCGTTCTCGGGTTGCTGCTACCCAGCGGGGCGTGTGCTTGCCGTTTGTTAGAATGCGGCTGACCAAAGGGTAGAAAAGGGGA
............................................................................(((((..(((((((((.........)))).)))))..)))))(((((((((((((..((.(((.......))).))...)).))))))))))).................................................................................
.....................................................................70......................................................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040036(GSM532921)
G243N. (cervix)
TAX577589(Rovira)
total RNA. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
TAX577588(Rovira)
total RNA. (breast)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038854(GSM458537)
MM653. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577453(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343337DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
TAX577743(Rovira)
total RNA. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
.....................................................................................................................................................GGCGGGGGCGGGGGTGGGCGG................................................................................21060.001.002.006.003.003.00-2.004.002.002.001.001.001.001.003.00-1.001.001.001.00--2.002.001.00-1.00--1.001.001.001.001.00-1.00-1.00-1.001.00---1.00---1.00-------1.00------1.00---------1.001.00-1.001.00--1.001.00-
.....................................................................................................................................................GGCGGGGGCGGGGGTGGGCG.................................................................................20031.001.007.003.001.002.00-1.001.002.00-1.001.00---1.00---1.00-2.00--1.001.00---------------------1.00--1.00---1.001.00------------1.00--1.00-----------
.....................................................................................................................................................GGCGGGGGCGGGGGTGGGCGGG...............................................................................22013.001.00--1.00--2.00--1.001.00--1.00----1.00------1.00----1.001.00----------1.00--------1.00-------------1.00-----------------
......................................................................................................................................................GCGGGGGCGGGGGTGGGCGG................................................................................2012.000.001.00-1.00-------1.001.001.00--1.001.00--------1.00-----------1.00--1.00------------------------1.00--1.00-------------
......................................................................................................................................................GCGGGGGCGGGGGTGGGCG.................................................................................197.000.003.00---------------1.00----------1.00--------------------------------------1.00--1.00------------
.....................................................................................................................................................................................................................................ACCAAAGGGTAGAAACACG..193.000.00----3.00-----------------------------------------------------------------------------
.....................................................................................................................................................................................................................................ACCAAAGGGTAGAAACAC...183.000.00----2.00-------------------------------------1.00---------------------------------------
......................................................................................................................................................GCGGGGGCGGGGGTGGGCGGG...............................................................................212.000.00-----------1.00---1.00------------------------------------------------------------------
.....................................................................................................................................................GGCGGGGGCGGGGGTGGGTG.................................................................................2001.001.00-------------------1.00--------------------------------------------------------------
..........................................................................CATCCTGGAACCCCGATTT.............................................................................................................................................................191.000.00-----------------------------------------------------------1.00----------------------
............................................................................................CCCTCCTCCTCGCAGTCTC...........................................................................................................................................191.000.00---------------------------------------------1.00------------------------------------
.....................................................................................................................................................GGCGGGGGCGGGGGTGGGCC.................................................................................2001.001.00-1.00--------------------------------------------------------------------------------
..........................GAGGCCGGTGGAAGAAGC..............................................................................................................................................................................................................1811.001.00---------------------------------------------------------------1.00------------------
.....................................................................................................................................................GGCGGGGGCGGGGGTGTGG..................................................................................191.000.001.00---------------------------------------------------------------------------------
.....................................................................................................................................................GGCGGGGGCGGGGGTGGG...................................................................................1801.001.00---------------------------1.00------------------------------------------------------
.....................................................................................................................................................GGCGGGGGCGGGGGTGGGCGT................................................................................2101.001.00-----------------------------------------------------------------------1.00----------
...................................................................................................................................................CTGGCGGGGGCGGGGGTGGGGGGG...............................................................................241.000.00------------------------------------------------------------1.00---------------------
.....................................................................................................................................................................................................................................ACCAAAGGGTAGAAAAAAG..191.000.00------------------------------------------------1.00---------------------------------
...........................................................................................................................................................................................................................................GGGTAGAAAAGGGGAATCA191.000.00---------------------------------1.00------------------------------------------------
.....................................................................................................................................................GGCGGGGGCGGGGGTGGATC.................................................................................201.000.00----------------------------------------------------------1.00-----------------------
.....................................................................................................................................................GGCGGGGGCGGGGGTGGGAA.................................................................................2001.001.00--------------------------1.00-------------------------------------------------------
.....................................................................................................................................................GGCGGGGGCGGGGGTGGGCCGG...............................................................................2201.001.00--------------1.00-------------------------------------------------------------------
.....................................................................................................................................................GGCGGGGGCGGGGGTGGGCGAG...............................................................................2201.001.00-------------------1.00--------------------------------------------------------------
....................CGCGGAGAGGCCGGTGGAAGAAGCA.............................................................................................................................................................................................................2511.001.00---------------------------------------------------------1.00------------------------
.......................................................................................................................................................CGGGGGCGGGGGTGGGAGGG...............................................................................201.000.00--------------------------------------------------------------------------1.00-------
......................................................................TCGGCATCCTGGAACTGG..................................................................................................................................................................181.000.00--------------------------------------------1.00-------------------------------------
........................GAGAGGCCGGTGGAACCT................................................................................................................................................................................................................181.000.00----------------------------------------------------1.00-----------------------------
....................................................................................................................................................TGGCGGGGGCGGGGGTGGG...................................................................................1960.330.33--------------------------------0.170.17------------------------------------------------
....................................................................................................................................................................GGGGGCGTTCTCGGG.......................................................................1530.330.33---------------------------------------------------------------------------------0.33
....................................................................................................................................................TGGCGGGGGCGGGGGTGGGTGT................................................................................2260.170.33----------------------------------0.17-----------------------------------------------

Antisense strand
GTTCAAGTTTAGCTATGTCTCGCGGAGAGGCCGGTGGAAGAAGCAACGAGGTGATCTTTCCTGCTTGGCATCGGCATCCTGGAACCCCGCGACCCTCCTCCTCGCAGGGGTCTCGGGACCCTCACCCTCTCAAGCGGGAACCGGCGTCTGGCGGGGGCGGGGGTGGGGGCGTTCTCGGGTTGCTGCTACCCAGCGGGGCGTGTGCTTGCCGTTTGTTAGAATGCGGCTGACCAAAGGGTAGAAAAGGGGA
............................................................................(((((..(((((((((.........)))).)))))..)))))(((((((((((((..((.(((.......))).))...)).))))))))))).................................................................................
.....................................................................70......................................................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040036(GSM532921)
G243N. (cervix)
TAX577589(Rovira)
total RNA. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
TAX577588(Rovira)
total RNA. (breast)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038854(GSM458537)
MM653. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577453(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343337DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
TAX577743(Rovira)
total RNA. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
..........................................................................CATCCTGGAACCCCGGTC.............................................................................................................................................................. 181.000.00--------------------------1.00-------------------------------------------------------
..........................................................................................................................................................GGGCGGGGGTGGGGGCACA............................................................................. 191.000.00--------------------------------------------------------1.00-------------------------
.........................................................................................................................................................................CACGCCCCGCTGGGTAGCAGCAACCCGAGAACG................................................ 3311.001.00--------------1.00-------------------------------------------------------------------
.........................................................................................................................................................GGGGCGGGGGTGGGGGCGTTCAT.......................................................................... 231.000.00------------------------------------------------------------------------------1.00---
...............................................................................................................................................................................CGGGTTGCTGCTACCCCC......................................................... 181.000.00-----------------------------------1.00----------------------------------------------
..........................................................................................................................................CACCCCCGCCCCCGCCAGACGCCGGTT..................................................................................... 2711.001.00----------------------------1.00-----------------------------------------------------
...........................................................................................ACCCTCCTCCTCGCAAC.............................................................................................................................................. 171.000.00-------------------------------------------------------------1.00--------------------
....................................................CCAAGCAGGAAAGATC...................................................................................................................................................................................... 1621.001.00--------0.50----------------------0.50--------------------------------------------------
...............................................................................................................CTCGGGACCCTCACCCGG......................................................................................................................... 181.000.00-----------------------------------------------------------------------------1.00----
.......................................................................................................................................................................................................TCTAACAAACGGCAAGCACAC.............................. 2111.001.00---------------------------------------------------1.00------------------------------