ID: uc002kyw.1_intron_1_0_chr18_33058314_r.3p
GENE: INO80C(3)
chr18:33058264-33058513-


(1)
B-CELL 		(1)
BRAIN 		(11)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(3)
HELA 		(2)
LIVER 		(1)
OTHER 		(2)
SKIN 		(1)
UTERUS

Sense strand
TGCACTTGGCCTGTGACATACTGTCTTGTTTCTGAGAATCCTCCCCTACTTCTCTAGTTAATCTCCAGAGACTTCTGTGACTACTTAATCACAAAGGAAATTTTCAGGAATATTATCAAATACTATTTTAGAAAAAAAAAGAGAAGGGATTTGAATGTTTTCAGTTCAGTTTAGTTATCTTTTTTTTTTTTTTTTCCCAGACTTCAGTATTGATGCTCCTCCATCCTTTAAGCCAGCTAAGAAGTATTCT
..................................................................................................................................((((((((((((((((((((((((((.......)))))).......))))))))))))))))))))......................................................
..............................................................................................................................127......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM532880(GSM532880)
G659T. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTCCCAATTG...............................................266.000.00-4.00-2.00--------------------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTCCCAATTT...............................................264.000.00-3.00----1.00-----------------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTCCCGG..................................................233.000.002.00----1.00------------------
..................................................................................................................................................................................CTTTTTTTTTTTTTTTTCCCGG..................................................222.000.002.00-----------------------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTCCCACTTG...............................................262.000.00-2.00----------------------
................................................................................................................................................................................ATCTTTTTTTTTTTTTTTTCGCC...................................................232.000.002.00-----------------------
................................................................................................................................................................................................TTTCCCAGACTTCAGTATTGAT....................................2212.002.00---------2.00--------------
..................................................................................................................................................................................CTTTTTTTTTTTTTTTTCCCACAG................................................242.000.00-1.00-1.00--------------------
...ACTTGGCCTGTGACATAC.....................................................................................................................................................................................................................................1812.002.00--------2.00---------------
...............................................................................................................................................................................TATCTTTTTTTTTTTTTTTTCCGGAG.................................................262.000.00----2.00-------------------
......................................................................................................................................................................................................................GCTCCTCCATCCTTTAAGCCAGC.............2311.001.00----------------1.00-------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTCCCAGGCC...............................................261.000.00------1.00-----------------
.........................................................................................................................................................................................TTTTTTTTTTCCCAGACTTA.............................................201.000.00--1.00---------------------
.........................................................................................................................................................................TTTAGTTATCTTTTTTCTTG.............................................................201.000.001.00-----------------------
................................................................................................................................................................................ATCTTTTTTTTTTTTTTTTCCTCGC.................................................251.000.00----1.00-------------------
...............................................................................................................................................................................TATCTTTTTTTTTTTTTTTTCGT....................................................231.000.00--1.00---------------------
................................................................................................................................................................................ATCTTTTTTTTTTTTTTTTCGGTG..................................................241.000.001.00-----------------------
................................................................................................................................................................................ATCTTTTTTTTTTTTTTTTCCCCTG.................................................251.000.00------1.00-----------------
............................................................................................................................................................................AGTTATCTTTTTTTTTTCCTG.........................................................211.000.001.00-----------------------
................................................................................................................................................................................ATCTTTTTTTTTTTTTTTTCGGC...................................................231.000.001.00-----------------------
........................CTTGTTTCTGAGAATCCTTCT.............................................................................................................................................................................................................211.000.00-----------------1.00------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTCCCAGACATAG............................................291.000.00--1.00---------------------
...........................................................................................................................................................................TAGTTATCTTTTTTTTTTTTTTTGG......................................................251.000.001.00-----------------------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTCCCAAATG...............................................261.000.00-1.00----------------------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTCCCACAAG...............................................261.000.00-1.00----------------------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTCCCATTTG...............................................261.000.00-1.00----------------------
............................................................................................................................................................................AGTTATCTTTTTTTTTTTTTTTGC......................................................241.000.001.00-----------------------
..............................................................................................................................................................................TTATCTTTTTTTTTTTTTTTTCCCAAG.................................................271.000.00--1.00---------------------
.....................................................................................................................................................................................TTTTTTTTTTTTTTCCCAGACCGG.............................................241.000.00-----1.00------------------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTCCCAACTG...............................................261.000.00-1.00----------------------
.....................................................................................................................................................................TCAGTTTAGTTATCTTTTTTTTTTCTTT.........................................................281.000.00----1.00-------------------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTCCCAGACAAAG............................................291.000.00--1.00---------------------
..................................................................................................................................................................................CTTTTTTTTTTTTTTTTCCCAGGTGG..............................................261.000.001.00-----------------------
...................................................................................................................................................................................TTTTTTTTTTTTTTTTCCCAGGTGG..............................................251.000.001.00-----------------------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTCCCATGG................................................251.000.00----1.00-------------------
............................................................................................................................................................................AGTTATCTTTTTTTTTTTTTCC........................................................221.000.001.00-----------------------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTCCCGGC.................................................241.000.00----1.00-------------------
..................................................................................................................................................................................CTTTTTTTTTTTTTTTTCCCACCGG...............................................251.000.00-----1.00------------------
................................................................................................................................................................................ATCTTTTTTTTTTTTTTTTCCCCTGG................................................261.000.001.00-----------------------
..................................................................................................................................................................................CTTTTTTTTTTTTTTTTCCCACACT...............................................251.000.001.00-----------------------
............................................................................................................................................................................AGTTATCTTTTTTTTTTTTTGCT.......................................................231.000.001.00-----------------------
................................................................................................................................................................................ATCTTTTTTTTTTTTTTTTCGCTC..................................................241.000.001.00-----------------------
...................................................................................................................................AAAAAAAAAGAGAAGGGATCAT.................................................................................................221.000.00--1.00---------------------
................................................................................................................................................................................ATCTTTTTTTTTTTTTTTTCGAA...................................................231.000.001.00-----------------------
.......................................................AGTTAATCTCCAGAGACTTCTGTGAC.........................................................................................................................................................................2611.001.00----------1.00-------------
..................................................................................................................................................................................CTTTTTTTTTTTTTTTTCCCATCG................................................241.000.00-1.00----------------------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTCCCGGGC................................................251.000.001.00-----------------------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTCCCGGG.................................................241.000.001.00-----------------------
.............................................................................................................................................................................GTTATCTTTTTTTTTTTTTTCGAG.....................................................241.000.001.00-----------------------
............................................................................................................................................................................AGTTATCTTTTTTTTTTTTTTTTCT.....................................................251.000.001.00-----------------------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTCCCACCGG...............................................261.000.001.00-----------------------
.............................................................................................................................................AGAAGGGATTTGAATGTGTT.........................................................................................201.000.00---------------------1.00--
.......................................................................................................................................................................AGTTTAGTTATCTTTTTGG................................................................191.000.001.00-----------------------
..................................................................................................................................................................................CTTTTTTTTTTTTTTTTCCCATTG................................................241.000.00-----1.00------------------
................................................................................................................................................................................ATCTTTTTTTTTTTTTTTTCCCAAAA................................................261.000.001.00-----------------------
..................................................................................................................................................................................CTTTTTTTTTTTTTTTTCCCAGGGGG..............................................261.000.00-1.00----------------------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTCCCACGGG...............................................261.000.00----1.00-------------------
.................................................................................................................................................................................TCTTTTTTTTTTTTTTTTCCCAGAAAG..............................................271.000.001.00-----------------------
..................................................................................................................................................................................CTTTTTTTTTTTTTTTTCCCACTTG...............................................251.000.00------1.00-----------------
................................................................................................................................................................................ATCTTTTTTTTTTTTTTTTCCCCGGG................................................261.000.001.00-----------------------
..............................................................................................................................................................................TTATCTTTTTTTTTTTTTTTTCGACG..................................................261.000.001.00-----------------------
..................................................................................................................................................................................CTTTTTTTTTTTTTTTTCCCGGA.................................................231.000.001.00-----------------------

Antisense strand
TGCACTTGGCCTGTGACATACTGTCTTGTTTCTGAGAATCCTCCCCTACTTCTCTAGTTAATCTCCAGAGACTTCTGTGACTACTTAATCACAAAGGAAATTTTCAGGAATATTATCAAATACTATTTTAGAAAAAAAAAGAGAAGGGATTTGAATGTTTTCAGTTCAGTTTAGTTATCTTTTTTTTTTTTTTTTCCCAGACTTCAGTATTGATGCTCCTCCATCCTTTAAGCCAGCTAAGAAGTATTCT
..................................................................................................................................((((((((((((((((((((((((((.......)))))).......))))))))))))))))))))......................................................
..............................................................................................................................127......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM532880(GSM532880)
G659T. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
................................................................................................................................................................................................TTTCCCAGACTTCAGGGT........................................ 185.000.00-------3.00---1.00-----------1.00
.................................................................................................................................AGAAAAAAAAAGAGAAGGTCTG................................................................................................... 223.000.00--1.001.00-1.00------------------
...................................................................................................................................................................................TTTTTTTTTTTTTTTTCCCATTTT............................................... 242.000.00------------------1.001.00----
.................................................................................................................................AGAAAAAAAAAGAGAAGGGG..................................................................................................... 201.000.00---1.00--------------------
............................................................................................................................................................................................TTTTTTTCCCAGACTTCG............................................ 181.000.00---------------1.00--------
....................................................................................................................................AAAAAAAAGAGAAGGCACT................................................................................................... 191.000.00---1.00--------------------
.....................................................................................................................................................................................TGGGAAAAAAAAAAAAAA................................................... 1801.001.00-------------1.00----------
...............................................................................................................................TTAGAAAAAAAAAGAGAAGTTTG.................................................................................................... 231.000.00-----1.00------------------
.....................................................................................................................................................................................................................TGCTCCTCCATCCTTGTCT.................. 191.000.00------------1.00-----------
................................................................................................................................TAGAAAAAAAAAGAGAAGTGAG.................................................................................................... 221.000.00--1.00---------------------
.................................................................................................................................AGAAAAAAAAAGAGAAGCTCG.................................................................................................... 211.000.00------1.00-----------------
...................................................................................................................................................................................TTTTTTTTTTTTTTTTCCCTTTT................................................ 231.000.00--------------------1.00---
..............................................................................................................................TTTAGAAAAAAAAAGAGTTTG....................................................................................................... 211.000.00-----1.00------------------
..............................................................................................................................TTTAGAAAAAAAAAGAGCG......................................................................................................... 191.000.00---1.00--------------------
................................................................................................................................................................................................TTTCCCAGACTTCAGTGGT....................................... 191.000.00--------------1.00---------
..................................................................................................................................................................AGTTCAGTTTAGTTACTG...................................................................... 181.000.00----------------------1.00-
...............................................................................................................................TTAGAAAAAAAAAGAGATA........................................................................................................ 191.000.00--1.00---------------------
.................................................................................................................................AGAAAAAAAAAGAGAAGGTTAG................................................................................................... 221.000.00---1.00--------------------