ID: uc002kwi.3_intron_15_0_chr18_28612243_r.3p
GENE: (1)
chr18:28612193-28612442-


(1)
B-CELL 		(3)
CELL-LINE 		(1)
OTHER 		(43)
SKIN 		(1)
XRN.ip

Sense strand
CTTTAAATATGAAGTTAGTTGTTGTTTTTCATAAATGAACTTTACCATATTGAGCAAATTCCTTTCTATTCCTAGTTTGCTGGGGTTTATTGTAAATGGGTGTTGGACTTTGTCAGTTGCTTGTTTTACATCTATTGATATGATTATGTTTTTTTTAATCTTTATTTTCTACTGTATTAATGTGACCTTTTAAATTCTAGATCTTCAGTCGTGCTGGTGAAGCCTGCAAAAAGGTGATACTTAATGTACC
.......................................................................((((......(((((((((((..(((((((((..(((...((.....))..)))..))))))))).....(((((.........))))).................))))).)))))).......))))..................................................
......................................................................71...............................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................................................................................................TAATGTGACCTTTTAAATTCTAG..................................................23134.0034.003.00--1.00-4.004.001.001.002.003.001.001.001.00--1.003.00-1.00--2.00---1.00--1.00-----1.00---1.00-----1.00--
...........................................................................................................................................................................CTGTATTAATGTGACCTTTTAAATTCTAGAA................................................31112.002.001.002.003.001.00-------1.00--------1.00----1.00-2.00--------------------
................................................................................................................................................................................TTAATGTGACCTTTTAAATTCTAG..................................................24111.0011.002.00------3.00-1.00--1.00-----1.001.00-1.00----------------------1.00---
.................................................................................................................................................................................TAATGTGACCTTTTAAATTCTAGA.................................................2418.008.001.002.00-1.00-1.001.00---1.00-----1.00-------------------------------
................................................................................................................................................................................TTAATGTGACCTTTTAAATTCTAGA.................................................2516.006.00-2.00------1.00---1.00-------------1.00---------1.00-----------
.................................................................................................................................................................................TAATGTGACCTTTTAAATTCTAGAA................................................2515.008.001.00-------1.00--------------1.00------1.00-1.00---------------
.........................................................................................................................................................................TACTGTATTAATGTGACCTTTTAAATTCTAGA.................................................3214.004.00---2.00----------1.00----------1.00----------------------
.........................................................................................................................................................................TACTGTATTAATGTGACCTTTTAAATTCTAGAA................................................3314.004.00--1.00-2.00---1.00---------------------------------------
............................................................................................................................................................................................................TCAGTCGTGCTGGTGAAGCC..........................2013.003.002.00---------------------------1.00-------------------
..........................................................................................................................................................................................................CTTCAGTCGTGCTGGTGAAGC...........................2113.003.00----2.00--------------------------------1.00----------
.......................................................................................................................................................................................................GATCTTCAGTCGTGCTGGTGA..............................2112.002.00---------------1.00---------------1.00----------------
...........................................................................................................................................................................CTGTATTAATGTGACCTTTTAAATTCTAGA.................................................3012.002.001.00----------------------------1.00------------------
.........................................................................................................................................................................................................TCTTCAGTCGTGCTGGTGC..............................191.000.00-------------1.00----------------------------------
..............................................................................................................................................................TCTTTATTTTCTACTGTACTAG......................................................................221.000.00---------------------------------1.00--------------
........................................................................................................................................................................................................ATCTTCAGTCGTGCT...................................1511.001.00----------------------------1.00-------------------
..........................................................................................................................................................................................................CTTCAGTCGTGCTGGTGAAGCCTGC.......................2511.001.00---1.00--------------------------------------------
.......................................................................................................................................................................................................GATCTTCAGTCGTGCTGG.................................1811.001.00---------------1.00--------------------------------
...........................................................................TTTGCTGGGGTTTATTGT.............................................................................................................................................................1811.001.00------------------------1.00-----------------------
.............................................................................................................................................................................................................CAGTCGTGCTGGTGAAGC...........................1811.001.00-----------------------1.00------------------------
..............................................................................................................................................................................TATTAATGTGACCTTTTAAATTCTAG..................................................2611.001.00--------------------1.00---------------------------
............................................................................................TAAATGGGTGTTGGATC.............................................................................................................................................171.000.00----------------------------------1.00-------------
.........................................................................................................................................................................................................TCTTCAGTCGTGCTGG.................................1611.001.00-------------1.00----------------------------------
................................................................................................................................................................................................................TCGTGCTGGTGAAGCCTGC.......................1911.001.00--1.00---------------------------------------------
...................................................................................................GTGTTGGACTTTGTCAGTTGCT.................................................................................................................................2211.001.00--------------1.00---------------------------------
.........................................................................................................................................................................................................TCTTCAGTCGTGCTGGTGAAGCCTG........................2511.001.00--------------------------------------1.00---------
.........................................................................................................................................................................TACTGTATTAATGTGACCTTTTAAATTCTAG..................................................3111.001.00-1.00----------------------------------------------
.......................................................................................................................................................................................................GATCTTCAGTCGTGCTG..................................1711.001.00---------------1.00--------------------------------
...............................................................................................................................................................................ATTAATGTGACCTTTTAAATTCTAG..................................................2511.001.00-----------1.00------------------------------------
.............................................................................................................................................................................................................CAGTCGTGCTGGTGAAGCCTG........................2111.001.00----------------------------------------1.00-------
....................................................................................................................................................TTTTTTTTAATCTTTATTGCTA................................................................................221.000.00----------------------------------------------1.00-
................................................................................................................................................................................TTAATGTGACCTTTTAAATTCTAGAA................................................2611.006.00---------1.00--------------------------------------
....................................................................................................................................................................................TGTGACCTTTTAAATTCTAGAA................................................221.000.00------------------1.00-----------------------------
..............................................................................................................................................................................TATTAATGTGACCTTTTAAATTCTAGA.................................................2711.001.00----------------1.00-------------------------------
...........................................................................................................................................................................CTGTATTAATGTGACCTTTTAAATTCTAG..................................................2911.001.00--1.00---------------------------------------------
...............................................................................................................................................................................ATTAATGTGACCTTTTAAATTCTAGA.................................................2611.001.00------------------------------------------1.00-----
.................................................................................................................................................................................TAATGTGACCTTTTAAATTCTAGC.................................................2411.0034.00----1.00-------------------------------------------
........................................................................................................................................................................................................ATCTTCAGTCGTGCTGGTGAAGCCTGCA......................2811.001.00--------------1.00---------------------------------
...................................................................................................................................................................................ATGTGACCTTTTAAATTCTAGA.................................................2211.001.00---------------------1.00--------------------------
.......................................................................................................................................................................................................GATCTTCAGTCGTGCTGGT................................1911.001.00----1.00-------------------------------------------
...........................................................................TTTGCTGGGGTTTATTGTCTGG.........................................................................................................................................................2211.001.00------------------------1.00-----------------------
.......................................................................................TATTGTAAATGGGTGTT..................................................................................................................................................1730.330.33-----------------------------------------------0.33

Antisense strand
CTTTAAATATGAAGTTAGTTGTTGTTTTTCATAAATGAACTTTACCATATTGAGCAAATTCCTTTCTATTCCTAGTTTGCTGGGGTTTATTGTAAATGGGTGTTGGACTTTGTCAGTTGCTTGTTTTACATCTATTGATATGATTATGTTTTTTTTAATCTTTATTTTCTACTGTATTAATGTGACCTTTTAAATTCTAGATCTTCAGTCGTGCTGGTGAAGCCTGCAAAAAGGTGATACTTAATGTACC
.......................................................................((((......(((((((((((..(((((((((..(((...((.....))..)))..))))))))).....(((((.........))))).................))))).)))))).......))))..................................................
......................................................................71...............................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...........................................................TCCTTTCTATTCCTAGGTT............................................................................................................................................................................ 191.000.00-------------------------------------------1.00----
..................................................................................................................................................................................................TTCTAGATCTTCAGTCTGA..................................... 191.000.00-----------------------------------------1.00------