ID: uc002kvm.2_intron_7_0_chr18_23637707_r.3p
GENE: (3)
chr18:23637657-23637906-


(1)
AGO2.ip 		(2)
B-CELL 		(13)
BREAST 		(17)
CELL-LINE 		(3)
CERVIX 		(2)
FIBROBLAST 		(4)
HEART 		(3)
HELA 		(2)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(24)
SKIN 		(1)
XRN.ip

Sense strand
CTGAGATTTTATAAAGTAAATATGCTTTAAAGTTTTGGGGGTTATTAACTATGTTCATGATGAAAATGCATTAGAAGAATTCGAAATGCATTTGTGTTTTTGTTCTTACTGCAATTTAGTAACATAAGCAACTCTTTTACCCTATGCATCTTTCGTATATTAGTCTGTTTCTCTTGTTTTACTAAACTGTCTTCTTTCAGCCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGG
.............................................................................................................................((((((......((..((((((.......)))...)))..))......)))))).......(((........)))..................................................
............................................................................................................................125........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR189783SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191468(GSM715578)
116genomic small RNA (size selected RNA from . (breast)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR038855(GSM458538)
D10. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191502(GSM715612)
9genomic small RNA (size selected RNA from to. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR038856(GSM458539)
D11. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038862(GSM458545)
MM472. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
.................................................................................................................................................................................TTTACTAAACTGTCTTCTTTCAGA.................................................24133.005.003.005.00-1.001.002.00--1.00----2.00-1.001.002.00-1.001.00-1.00------1.001.00-1.00-1.00------------1.001.00----1.001.00-1.00----1.00---------1.00--
................................................................................................................................................................................TTTTACTAAACTGTCTTCTTTCAGA.................................................25132.003.009.004.001.002.002.00-1.00-2.001.00-----1.00-----1.00-1.00--1.00-1.00--------------1.00-------------1.00-1.00---------1.00--1.00-
.................................................................................................................................................................................TTTACTAAACTGTCTTCTTTCAGAA................................................2518.005.004.00---------1.00-------------2.00--------------------------------------1.00----------
................................................................................................................................................................................TTTTACTAAACTGTCTTCTTTCAGAA................................................2616.003.002.00-3.00-----------------------------------------------------------------1.00-----
.................................................................................................................................................................................TTTACTAAACTGTCTTCTTTCAG..................................................2315.005.00---------------------1.00-1.00--------------1.00-----------------------1.00---1.00-------
................................................................................................................................................................................TTTTACTAAACTGTCTTCTTTCAGAG................................................2615.003.004.00----1.00--------------------------------------------------------------------
.................................................................................................................................AACTCTTTTACCCTATGCAT.....................................................................................................2014.004.00------1.00-----------1.00---------------------------------1.00-----------1.00---------
...............................................................................................................................................................................GTTTTACTAAACTGTCTTCTTTCAGA.................................................263.000.00---------2.00-1.00--------------------------------------------------------------
...............................................................................................................................................................................................................................GGGTCCTGGAGGGATGAATC.......2013.003.00-------3.00------------------------------------------------------------------
...........................................................................................................................ATAAGCAACTCTTTTACCCTATGCAT.....................................................................................................2613.003.00-----------------------------------------1.00--1.00-1.00---------------------------
................................................................................................................................................................................TTTTACTAAACTGTCTTCTTTCAG..................................................2413.003.00-------------------------------1.00-----------------------1.00--1.00---------------
..................................................................................................................................................................................TTACTAAACTGTCTTCTTTCAGA.................................................232.000.00----1.00----------------------------------------1.00----------------------------
.............................................................................................................TGCAATTTAGTAACATAAGCAACTCTTTTA...............................................................................................................3012.002.00------------2.00-------------------------------------------------------------
............................................................................................................................TAAGCAACTCTTTTACCCTATGCAT.....................................................................................................2512.002.00-----------1.00--------1.00-----------------------------------------------------
...........................................................................................................................................................TATATTAGTCTGTTTCTCTT...........................................................................2012.002.00--------------2.00-----------------------------------------------------------
.................................................................................................................................................................................TTTACTAAACTGTCTTCTTTCAGG.................................................2412.005.00---------------------------------1.00---1.00------------------------------------
................................................................................................................................CAACTCTTTTACCCTATGCAT.....................................................................................................2112.002.00---------------------------------------1.00---------------------------1.00------
.................................................................................................................................................................................TTTACTAAACTGTCTTCTTTCATA.................................................241.000.00------1.00-------------------------------------------------------------------
........................................................................................................................................................................................................................................AGGGATGAATCAGAGCGG1811.001.00---------------------------------------------------1.00----------------------
................................................................................................................................................................................TTTTACTAAACTGTCTTCTTTCATAA................................................261.000.00--1.00-----------------------------------------------------------------------
..................................................................................................................................................................................TTACTAAACTGTCTTCTTTCAGAA................................................241.000.00-------------------1.00------------------------------------------------------
.............................................................................................................................AAGCAACTCTTTTACCCTATGCAT.....................................................................................................2411.001.00------------------1.00-------------------------------------------------------
...................................................................................................................................................................................................................................CCTGGAGGGATGAATCAGAGCG.2211.001.00---------------------------1.00----------------------------------------------
................................................................................................................................................................................TTTTACTAAACTGTCTTCTTTCAGAC................................................2611.003.00-----1.00--------------------------------------------------------------------
.................................................................................................................................................................................TTTACTAAACTGTCTTCTTTC....................................................2111.001.00-----------------------------------1.00--------------------------------------
..............................................................................................................................AGCAACTCTTTTACCCTATGCAT.....................................................................................................2311.001.00---1.00----------------------------------------------------------------------
..........................................................................AAGAATTCGAAATGCATTTGTG..........................................................................................................................................................2211.001.00----------------------------------------------------------------------1.00---
.......................................................................................................................................................................................................................ATGCCTATGGGTCCTGGAGGGACG...........241.000.00-------------------------------------------------1.00------------------------
.................................................................................................................................................................................TTTACTAAACTGTCTTCTTTCAGC.................................................2411.001.00-1.00------------------------------------------------------------------------
.................................................................................................................................................................................TTTACTAAACTGTCTTCTTTCAGCA................................................2511.001.00------------------------------------1.00-------------------------------------
...............................................................................................................................................................................................................................GGGTCCTGGAGGGATCAG.........181.000.00------------------------------------------1.00-------------------------------
............................................................................................................................................................................................................................TATGGGTCCTGGAGGGAT............1811.001.00----------------1.00---------------------------------------------------------
.............................................................................................................................................................................................................................ATGGGTCCTGGAGGGAT............1711.001.00-------------------------1.00------------------------------------------------
..................................................................................................................................................................................TTACTAAACTGTCTTCTTTCAGATA...............................................251.000.001.00-------------------------------------------------------------------------
.................................................................................................................................................................................TTTACTAAACTGTCTTCTTTCATAA................................................251.000.00----------1.00---------------------------------------------------------------
....................................................................................................................................................................................................................AATATGCCTATGGGTCCTGGAGGGATGAATC.......3111.001.00----------------------1.00---------------------------------------------------
......................................................................................................................................................................................................................................GGAGGGATGAATCAGAGCG.1911.001.00--------------------------------------------------1.00-----------------------
.....................................................................................................................................CTTTTACCCTATGCAT.....................................................................................................1640.250.25-------------------------------------------------------------------------0.25

Antisense strand
CTGAGATTTTATAAAGTAAATATGCTTTAAAGTTTTGGGGGTTATTAACTATGTTCATGATGAAAATGCATTAGAAGAATTCGAAATGCATTTGTGTTTTTGTTCTTACTGCAATTTAGTAACATAAGCAACTCTTTTACCCTATGCATCTTTCGTATATTAGTCTGTTTCTCTTGTTTTACTAAACTGTCTTCTTTCAGCCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGG
.............................................................................................................................((((((......((..((((((.......)))...)))..))......)))))).......(((........)))..................................................
............................................................................................................................125........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR189783SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191468(GSM715578)
116genomic small RNA (size selected RNA from . (breast)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR038855(GSM458538)
D10. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191502(GSM715612)
9genomic small RNA (size selected RNA from to. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR038856(GSM458539)
D11. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038862(GSM458545)
MM472. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
.........................................................................................ATTTGTGTTTTTGTTCCCG.............................................................................................................................................. 191.000.00----------------------------------------1.00---------------------------------
................................................................................................................................................................................................TCTTTCAGCCACCCACGG........................................ 181.000.00-----------------------------------------------------------------1.00--------
.................................................................................................................................................................................................CTTTCAGCCACCCACACG....................................... 181.000.00------------------------------------------------------------1.00-------------