ID: uc002ktw.2_intron_15_0_chr18_20586396_f.5p
GENE: (16)
chr18:20586346-20586595+


(1)
AGO1.ip
(1)
AGO2.ip
(1)
B-CELL
(1)
BREAST
(15)
CELL-LINE
(1)
CERVIX
(1)
HEART
(1)
HELA
(1)
LIVER
(2)
OTHER
(1)
RRP40.ip
(8)
SKIN
(1)
XRN.ip

Sense strand
AAAGTCAAGCAGAAAGCGTTTGTGGAGCCGTATTTTAAAGGTGATGAAAGGTAAGTTGGTTTTTATTTATACCAGCAATGTGACTGGAAGTACAATAGAGCTGTCTTTTATTTCTCTCTCTTTTTTCTTTTTTTTTAAAGACAGAGTCTTGCTCTGTCACCCAGGCTAGAGTGCAATGGCGTAAACTCAGCTCACTGCAACCTCTGCCTCCTAGGCTCAAGCAATACTCCCACCTCAGCCTCCTGAGTAT
.......................................................................((((((...)).))))..((((..(((..(((........................(((......)))(((((((.....)))))))...))).)))..))))............................................................................
....................................................................69...........................................................................................................178......................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR040035(GSM532920)
G001T. (cervix)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................................................................................................................TCTGTCACCCAGGCTAGAGGGA............................................................................223.000.00----------2.00----------------1.00---
........................................................................................................................................................TCTGTCACCCAGGCTAGAGGGG............................................................................223.000.00----3.00--------------------------
..........AGAAAGCGTTTGTGGAGCCGTACTTT......................................................................................................................................................................................................................263.000.00--3.00----------------------------
.........................................................................AGCAATGTGACTGGAGTG...............................................................................................................................................................182.000.00------2.00------------------------
..........AGAAAGCGTTTGTGGA................................................................................................................................................................................................................................1612.002.00---------2.00---------------------
.......................................................................................................................CTTTTTTCTTTTTTTTTAACTCG............................................................................................................232.000.00-------1.001.00----------------------
........................................................................................................................................................................................ACTCAGCTCACTGCAACCTCTGCCGCC.......................................272.000.002.00------------------------------
..................................................................................................................TCTCTCTTTTTTCTTTTTTCCCA.................................................................................................................232.000.002.00------------------------------
....................................................................................................................TCTCTTTTTTCTTTTTTTTTCAG...............................................................................................................232.000.00---2.00---------------------------
..............AGCGTTTGTGGAGCCAAA..........................................................................................................................................................................................................................182.000.00----------------------1.00-1.00------
......................................................................................................................................................................................................................GCTCAAGCAATACTCCCACC................2001.001.00-----1.00-------------------------
..................................................................................................................TCTCTCTTTTTTCTTTTTTTTTCAG...............................................................................................................251.000.00-1.00-----------------------------
...................................................................................................................CTCTCTTTTTTCTTTTTTTTTAAG...............................................................................................................241.000.00-1.00-----------------------------
.....................................................................................................................................................TGCTCTGTCACCCAGGCTAGAGTGCCAAG........................................................................291.000.001.00------------------------------
.......AGCAGAAAGCGTTTGTGGAGCCG............................................................................................................................................................................................................................2311.001.00-----------------------1.00-------
..............................................................................................................................................................................................CTCACTGCAACCTCTGCCTCCTAGGCTAAAG.............................311.000.00-----------1.00-------------------
...................................................................................................................CTCTCTTTTTTCTTTTTTTTACAG...............................................................................................................241.000.00-1.00-----------------------------
...........................................................................................................TTATTTCTCTCTCTTTTTTCTTTTTTTTTTTG...............................................................................................................321.000.00-1.00-----------------------------
............................................................................................................................................................TCACCCAGGCTAGAGTGCAACGAC......................................................................241.000.001.00------------------------------
.................................................................................................................CTCTCTCTTTTTTCTTTTTTTTCAG................................................................................................................251.000.00-1.00-----------------------------
.......................................................................................................................CTTTTTTCTTTTTTTTTAACG..............................................................................................................211.000.00-------1.00-----------------------
...............................................................................................................TTCTCTCTCTTTTTTCTTTTTTGCCT.................................................................................................................261.000.00--1.00----------------------------
..................................................................................................................TCTCTCTTTTTTCTTTTTTTCAG.................................................................................................................231.000.00-1.00-----------------------------
........................................................................................................................TTTTTTCTTTTTTTTTAACTCG............................................................................................................221.000.00---1.00---------------------------
..................................................................................................................TCTCTCTTTTTTCTTTTTTCG...................................................................................................................211.000.00-1.00-----------------------------
......AAGCAGAAAGCGTTTGTGGAGCCGT...........................................................................................................................................................................................................................2511.001.00-------------------------1.00-----
........................................................................................................................................AAAGACAGAGTCTTGCGCTG..............................................................................................201.000.00--1.00----------------------------
....................................................................................................................TCTCTTTTTTCTTTTTTTCGTT................................................................................................................221.000.001.00------------------------------
....................................................................................................................TCTCTTTTTTCTTTTTTTTTACAGG.............................................................................................................251.000.001.00------------------------------
.......................................................................................................................CTTTTTTCTTTTTTTTTAACCAG............................................................................................................231.000.001.00------------------------------
......................................................................................................................TCTTTTTTCTTTTTTTTTAAGGG.............................................................................................................231.000.001.00------------------------------
......................................................................................................................TCTTTTTTCTTTTTTTTTAAAAAG............................................................................................................241.000.00--------1.00----------------------
...................................................................................................................CTCTCTTTTTTCTTTTTTTTTCTG...............................................................................................................241.000.00-1.00-----------------------------
..................................................................................................................TCTCTCTTTTTTCTTTTTTTTTCCC...............................................................................................................251.000.001.00------------------------------
...............................................................................................................TTCTCTCTCTTTTTTCTTTTTTTTACG................................................................................................................271.000.00-1.00-----------------------------
...............................................................................................................................................................................................TCACTGCAACCTCTGCCTCCTA.....................................2201.001.00--------------------1.00----------
....................................................................................................................TCTCTTTTTTCTTTTTTTTTAAG...............................................................................................................231.000.00-1.00-----------------------------
................................................................................................................TCTCTCTCTTTTTTCTTTTTTTTTCTT...............................................................................................................271.000.00---1.00---------------------------
...................................................................................................................CTCTCTTTTTTCTTTTTTTTAATG...............................................................................................................241.000.00---1.00---------------------------
................................................................................................................TCTCTCTCTTTTTTCGTCT.......................................................................................................................191.000.00---------------1.00---------------
..............................................................................................................TTTCTCTCTCTTTTTTCTTTG.......................................................................................................................211.000.001.00------------------------------
........................................................................................................................................................TCTGTCACCCAGGCTAGAGG..............................................................................201.000.00-----1.00-------------------------
.................................TTTAAAGGTGATGAAAGGTAAGTTG................................................................................................................................................................................................2511.001.00---------------------1.00---------
........................................................TGGTTTTTATTTATATATA...............................................................................................................................................................................191.000.00-----------------1.00-------------
.................................................................................................................CTCTCTCTTTTTTCTTTTTTTTTACTG..............................................................................................................271.000.00-1.00-----------------------------
.....................................AAGGTGATGAAAGGTAAGT..................................................................................................................................................................................................1911.001.00-------------------1.00-----------
................................TTTTAAAGGTGATGAAAGA.......................................................................................................................................................................................................191.000.00----------------1.00--------------
.....................................................................................................................CTCTTTTTTCTTTTTTTTTCAG...............................................................................................................221.000.00-------1.00-----------------------
........................................................................................................................................................TCTGTCACCCAGGCTAGAGGGAT...........................................................................231.000.00------1.00------------------------
...................................................................................................................CTCTCTTTTTTCTTTTTTTTTCAAG..............................................................................................................251.000.00-1.00-----------------------------
.....................................................................................................................................................................................................................GGCTCAAGCAATACTCCCACCTCCG............251.000.00--------------1.00----------------
...................................................................................................................................................................................................TGCAACCTCTGCCTCCTAGCTC.................................221.000.00--1.00----------------------------
.....................................................................................................................CTCTTTTTTCTTTTTTTTTCCTG..............................................................................................................231.000.00-----------1.00-------------------
........................................................................................................................TTTTTTCTTTTTTTTTAACGGG............................................................................................................221.000.001.00------------------------------
...............................................................................................................................................................................................................................ATACTCCCACCTCAGCCTCCTGC....231.000.00--1.00----------------------------
.....................................................................................................................CTCTTTTTTCTTTTTTTTTAAACAG............................................................................................................251.000.00---1.00---------------------------
...............GCGTTTGTGGAGCCGTATTTTAAAGGT................................................................................................................................................................................................................2711.001.00------------1.00------------------
...............................................................................................................................................................................ATGGCGTAAACTCAGCTCACTGC....................................................2311.001.00--1.00----------------------------
.....................................................................................................................CTCTTTTTTCTTTTTTTTTAAAG..............................................................................................................2330.330.33-0.33-----------------------------
..................................................................................................................TCTCTCTTTTTTCTTTTTTTTTA.................................................................................................................2360.170.170.17------------------------------
...................................................................................................................................................................................................................TAGGCTCAAGCAATACTCCCACC................2390.110.11------------------------------0.11

Antisense strand
AAAGTCAAGCAGAAAGCGTTTGTGGAGCCGTATTTTAAAGGTGATGAAAGGTAAGTTGGTTTTTATTTATACCAGCAATGTGACTGGAAGTACAATAGAGCTGTCTTTTATTTCTCTCTCTTTTTTCTTTTTTTTTAAAGACAGAGTCTTGCTCTGTCACCCAGGCTAGAGTGCAATGGCGTAAACTCAGCTCACTGCAACCTCTGCCTCCTAGGCTCAAGCAATACTCCCACCTCAGCCTCCTGAGTAT
.......................................................................((((((...)).))))..((((..(((..(((........................(((......)))(((((((.....)))))))...))).)))..))))............................................................................
....................................................................69...........................................................................................................178......................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR040035(GSM532920)
G001T. (cervix)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................................................................................................................................................ACCTCTGCCTCCTAGGCTCAGT............................. 221.000.001.00------------------------------
............................................................................................................................................................................................AGCTCACTGCAACCTCTGCCTCCTACTG.................................. 281.000.00------------------1.00------------
........................................................................................................................................................................................ACTCAGCTCACTGCAACCTCTAT........................................... 231.000.00----------------------------1.00--
.......................................................................................................................................................................................................ACCTCTGCCTCCTAGGCTCAGGCG........................... 241.000.001.00------------------------------
.........................................................................................................................................................................................................................CAAGCAATACTCCCACCTGGT............ 211.000.00-------------1.00-----------------
.....................................................................................................................................................................................................CAACCTCTGCCTCCTAA.................................... 171.000.00-----1.00-------------------------
..................................................................................................................................................................................................CTGCAACCTCTGCCTCCTAAGG.................................. 221.000.00-----------------------------1.00-
...................................................................................................................................................................GGCTAGAGTGCAATGGCGGGGT................................................................. 221.000.001.00------------------------------
............................................................................................................................................................................................AGCTCACTGCAACCTCTGCCTCCG...................................... 241.000.00--1.00----------------------------
.............................................................................................................................................CAGAGTCTTGCTCTGTCACCCAGGCTAGCC............................................................................... 301.000.00--1.00----------------------------
................................................................................................................................................................................................................................TACTCCCACCTCAGCCTCCTCCGC.. 241.000.001.00------------------------------
........................................................................................................................................................................................ACTCAGCTCACTGCAACCTCTGCCTCGG...................................... 281.000.00--1.00----------------------------
..............................................................................................................................................................................................................................AATACTCCCACCTCAGCCTCCTGAAC.. 261.000.00--------------------------1.00----
...............................................................................................................................................................................................................GTGGGAGTATTGCTTGAGCCTAGGAG................. 2670.140.14------------0.14------------------