ID: uc002kra.2_intron_0_0_chr18_12408007_f.5p
GENE: (1)
chr18:12407957-12408206+


(1)
AGO2.ip 		(10)
B-CELL 		(4)
BRAIN 		(10)
BREAST 		(35)
CELL-LINE 		(4)
CERVIX 		(4)
HEART 		(4)
HELA 		(3)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(20)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
CGCCCTGCGCCGGCGGCAATGAAGATCTGGAGCTCGGAGCACGTGTTTGGGTGAGGCCGGGCTGAGGGCCGCGGTGGGGCCGTCCAGACGCCGGCTCCTGCTCCCGAGCCCGGCTGGAGCGGTCCAGGAAAGGCCGGACCTCACAGCGGGCCTCGCGGAGATCCCCGCCCCGCGCCGGCCGTTCCCAGACCGCAACTTCGGCGTCCCGGAGAGGGCACGCGCGCTTCCCCGGGACCGCGGTCTGGGCGAG
..................................................((..(((((((((..(((..(((..(((((((.........)))))))))).))).)))))))))...))..................................................................................................................................
..................................................51............................................................................129.......................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189786SRR038852(GSM458535)
QF1160MB. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037936(GSM510474)
293cand1. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784SRR040041(GSM532926)
G612T. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR191462(GSM715572)
1genomic small RNA (size selected RNA from to. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR040016(GSM532901)
G645N. (cervix)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		GSM956925PAZD5SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		TAX577746(Rovira)
total RNA. (breast)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		TAX577739(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
.......................GATCTGGAGCTCGGAGCA.................................................................................................................................................................................................................18120.0020.00--1.0011.008.00---------------------------------------------------------------------------------------------------
.........................TCTGGAGCTCGGAGCACG...............................................................................................................................................................................................................18113.0013.0011.00----1.00-------1.00------------------------------------------------------------------------------------------
.......................GATCTGGAGCTCGGAGCACG...............................................................................................................................................................................................................20112.0012.003.00-4.00--1.00---1.00-1.00----------------------1.00-----------1.00---------------------------------------------------------
.....................AAGATCTGGAGCTCGGAGCA.................................................................................................................................................................................................................2018.008.00-1.003.00------------1.00---1.00-----------------------------------------1.00------------------------------1.00-----------
.....................................................AGGCCGGGCTGAGGGCCGCGG................................................................................................................................................................................2117.007.00-1.004.00--2.00--------------------------------------------------------------------------------------------------
........................ATCTGGAGCTCGGAGCAC................................................................................................................................................................................................................1816.006.005.00--------------1.00----------------------------------------------------------------------------------------
........................ATCTGGAGCTCGGAGCACGTG.............................................................................................................................................................................................................2116.006.00-5.00--------------------------------------------------------1.00---------------------------------------------
........................ATCTGGAGCTCGGAGCA.................................................................................................................................................................................................................1715.005.005.00-------------------------------------------------------------------------------------------------------
....................GAAGATCTGGAGCTCGGAGCA.................................................................................................................................................................................................................2115.005.00--4.00--1.00--------------------------------------------------------------------------------------------------
........................ATCTGGAGCTCGGAGCACG...............................................................................................................................................................................................................1915.005.001.00----1.00-----------------1.00----------------1.00--------------------------------1.00------------------------------
...........................................................................................................GCCCGGCTGGAGCGGTCCAGG..........................................................................................................................2114.004.00-4.00------------------------------------------------------------------------------------------------------
.................................................................................................................................................................TCCCCGCCCCGCGCC..........................................................................1504.004.00--------------------------------------------------1.00-----------1.00--------------------1.00------1.00-------------
..................ATGAAGATCTGGAGCTCGGAG...................................................................................................................................................................................................................2124.004.00-2.00------2.00-----------------------------------------------------------------------------------------------
................................CTCGGAGCACGTGTTTGGG.......................................................................................................................................................................................................1914.004.001.00-----2.00----1.00--------------------------------------------------------------------------------------------
..................................................GTGAGGCCGGGCTGAGGGCCG...................................................................................................................................................................................2113.003.00------3.00-------------------------------------------------------------------------------------------------
........................ATCTGGAGCTCGGAGCACGT..............................................................................................................................................................................................................2013.003.00-----1.00-----------------------------------------------------------1.00----------------1.00---------------------
................................CTCGGAGCACGTGTTTGGGT......................................................................................................................................................................................................2013.003.00-1.00-----2.00------------------------------------------------------------------------------------------------
.....................AAGATCTGGAGCTCGGAGCAC................................................................................................................................................................................................................2113.003.00-1.00-------------1.00-------------------------------------------------------1.00--------------------------------
.......................................................................................................CCGAGCCCGGCTGGAGCGGTCC.............................................................................................................................2213.003.00------------------1.00------------------------------1.00-------1.00----------------------------------------------
.................AATGAAGATCTGGAGCTCGGAG...................................................................................................................................................................................................................2213.003.00--------1.00-2.00---------------------------------------------------------------------------------------------
..CCCTGCGCCGGCGGCAATGAAGATCT..............................................................................................................................................................................................................................2613.003.00---2.001.00---------------------------------------------------------------------------------------------------
..................ATGAAGATCTGGAGCTCGGAGCA.................................................................................................................................................................................................................2313.003.00-3.00------------------------------------------------------------------------------------------------------
.................AATGAAGATCTGGAGCTCGG.....................................................................................................................................................................................................................2013.003.00-------1.00----1.00-------------------------------------------------------------------------1.00-----------------
..................ATGAAGATCTGGAGCTCGGAGCAC................................................................................................................................................................................................................2413.003.00-2.00----------------------------------------------------------------------------1.00-------------------------
.............CGGCAATGAAGATCTGGAGCT........................................................................................................................................................................................................................2113.003.00-2.00-----------------------------------------------------------------------------------------1.00------------
.....................AAGATCTGGAGCTCGGAG...................................................................................................................................................................................................................1822.502.50--0.50---0.50-0.50-0.50-----------------------------------------------------------------------------------0.50---------
.....................AAGATCTGGAGCTCGGAGCACG...............................................................................................................................................................................................................2212.002.00-----1.00-----1.00--------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................CACGCGCGCTTCCCCCGA.................182.000.00------------------------------1.00--------------1.00----------------------------------------------------------
..........................CTGGAGCTCGGAGCACGTG.............................................................................................................................................................................................................1912.002.00-1.001.00-----------------------------------------------------------------------------------------------------
.......CGCCGGCGGCAATGAAGATCTGGAGCTCGGAGC..................................................................................................................................................................................................................3312.002.00----------2.00---------------------------------------------------------------------------------------------
...............................GCTCGGAGCACGTGTTTGGG.......................................................................................................................................................................................................2012.002.001.00------------------------1.00------------------------------------------------------------------------------
.......................................................................................................CCGAGCCCGGCTGGAGCGGT...............................................................................................................................2012.002.00-------1.00-------------------------------------------------------------------------------1.00----------------
.................AATGAAGATCTGGAGCTCGA.....................................................................................................................................................................................................................202.000.00------------2.00-------------------------------------------------------------------------------------------
...............................................TGGGTGAGGCCGGGCTGAGGGC.....................................................................................................................................................................................2212.002.00--2.00-----------------------------------------------------------------------------------------------------
.........................................................................GTGGGGCCGTCCAGACGC...............................................................................................................................................................1812.002.001.001.00------------------------------------------------------------------------------------------------------
.................................................................................................................................................................TCCCCGCCCCGCGCCGGGGAG....................................................................212.000.00-------------1.001.00-----------------------------------------------------------------------------------------
......................AGATCTGGAGCTCGGAGCACGTGTTTGGG.......................................................................................................................................................................................................2912.002.00--------------------1.00--------------1.00--------------------------------------------------------------------
..............................AGCTCGGAGCACGTGTTTGG........................................................................................................................................................................................................2012.002.00--2.00-----------------------------------------------------------------------------------------------------
.......................................................................................................CCGAGCCCGGCTGGAGCGGTCT.............................................................................................................................2212.001.00----1.00--1.00------------------------------------------------------------------------------------------------
................................................GGGTGAGGCCGGGCTGAGG.......................................................................................................................................................................................1912.002.00------------1.00---------------------------------------------------------------------------1.00---------------
..............GGCAATGAAGATCTGGAGCTCGGAG...................................................................................................................................................................................................................2512.002.00--------------------------2.00-----------------------------------------------------------------------------
..........................CTGGAGCTCGGAGCACG...............................................................................................................................................................................................................1712.002.002.00-------------------------------------------------------------------------------------------------------
..................ATGAAGATCTGGAGCTCGGA....................................................................................................................................................................................................................2021.501.50-1.00----------0.50-------------------------------------------------------------------------------------------
....................................................GAGGCCGGGCTGAGGGCCG...................................................................................................................................................................................1911.001.00--------------------------------------1.00-----------------------------------------------------------------
....................GAAGATCTGGAGCTCGGAGC..................................................................................................................................................................................................................2011.001.00-------------1.00------------------------------------------------------------------------------------------
.......................................................................................................CCGAGCCCGGCTGGAGCGGCCC.............................................................................................................................221.000.00-----------------1.00--------------------------------------------------------------------------------------
...CCTGCGCCGGCGGCAATGAATT.................................................................................................................................................................................................................................221.000.00------------------------------------------1.00-------------------------------------------------------------
...............GCAATGAAGATCTGGAGCTCGGAGCACG...............................................................................................................................................................................................................2811.001.00--------------------1.00-----------------------------------------------------------------------------------
.................................................................................................................................................................TCCCCGCCCCGCGCCGCGGA.....................................................................201.000.00--------------1.00-----------------------------------------------------------------------------------------
.......................................................................................................CCGAGCCCGGCTGGAGCGGTC..............................................................................................................................2111.001.00---------------------------------------------------------------------------1.00----------------------------
...........................................................................................................GCCCGGCTGGAGCGGTCCAGGC.........................................................................................................................2211.004.00-----------------1.00--------------------------------------------------------------------------------------
........................ATCTGGAGCTCGGAGCACGTGTTTG.........................................................................................................................................................................................................2511.001.00------------------------------------------------------1.00-------------------------------------------------
.......................................CACGTGTTTGGGTGAGGCCGG..............................................................................................................................................................................................2111.001.00-------------------------------------1.00------------------------------------------------------------------
.....................AAGATCTGGAGCTCGGAGC..................................................................................................................................................................................................................1911.001.00--------------------------------------------------------------------------------1.00-----------------------
.................................................................................................................CTGGAGCGGTCCAGGGG........................................................................................................................171.000.00----------------1.00---------------------------------------------------------------------------------------
.........................................................................................................................................ACCTCACAGCGGGCCTCGCGGACC.........................................................................................241.000.00-----------------1.00--------------------------------------------------------------------------------------
.......................GATCTGGAGCTCGGAGCAC................................................................................................................................................................................................................1911.001.00---------1.00----------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................GCACGCGCGCTTCCCCGCTCG...............211.000.00---------------------------------------------------1.00----------------------------------------------------
......................................................................................................CCCGAGCCCGGCTGGAGCGGTC..............................................................................................................................2211.001.00-------------------------------------------------------------------------------------1.00------------------
................CAATGAAGATCTGGAGCTCGGAGC..................................................................................................................................................................................................................2411.001.00-----------------------------------------------------1.00--------------------------------------------------
.........................................................................................................................................ACCTCACAGCGGGCCTCGCGGAT..........................................................................................231.000.00----------------------1.00---------------------------------------------------------------------------------
....................GAAGATCTGGAGCTCGGA....................................................................................................................................................................................................................1821.001.00------1.00-------------------------------------------------------------------------------------------------
...................TGAAGATCTGGAGCTCGGAGC..................................................................................................................................................................................................................2111.001.00----------------------1.00---------------------------------------------------------------------------------
..........................CTGGAGCTCGGAGCACGTGTTTG.........................................................................................................................................................................................................2311.001.00---------1.00----------------------------------------------------------------------------------------------
...................................................TGAGGCCGGGCTGAGGGCCGCGG................................................................................................................................................................................2311.001.00-------1.00------------------------------------------------------------------------------------------------
........................ATCTGGAGCTCGGAGCACGTGTTTGGG.......................................................................................................................................................................................................2711.001.00-1.00------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................ACGCGCGCTTCCCCGA..................161.000.00-------------------------------------------------------------------------------1.00------------------------
...........................................................................................................GCCCGGCTGGAGCGGTCCCGG..........................................................................................................................211.000.00-1.00------------------------------------------------------------------------------------------------------
.........................................................CGGGCTGAGGGCCGCGGG...............................................................................................................................................................................181.000.00---------------------------------------1.00----------------------------------------------------------------
.....................................................AGGCCGGGCTGAGGGCCGC..................................................................................................................................................................................1911.001.00------1.00-------------------------------------------------------------------------------------------------
...........GGCGGCAATGAAGATCTGGAG..........................................................................................................................................................................................................................2111.001.00-------------------------------------------------------1.00------------------------------------------------
.........CCGGCGGCAATGAAGATCTGGAGCTCGGAGC..................................................................................................................................................................................................................3111.001.00--------------------------------------------------------------------------1.00-----------------------------
............GCGGCAATGAAGATCTGGAG..........................................................................................................................................................................................................................2011.001.00----------------------------------------------------1.00---------------------------------------------------
...............................................................................................................................................................GATCCCCGCCCCGCGG...........................................................................161.000.00----------------------------------------------------------------------1.00---------------------------------
...........................................................................................................GCCCGGCTGGAGCGGTCCAGT..........................................................................................................................211.000.00-1.00------------------------------------------------------------------------------------------------------
........GCCGGCGGCAATGAAGAT................................................................................................................................................................................................................................1811.001.00------------------------------------------------------------------------------------1.00-------------------
..........................CTGGAGCTCGGAGCACGTGTTT..........................................................................................................................................................................................................2211.001.00------------------1.00-------------------------------------------------------------------------------------
.........................TCTGGAGCTCGGAGCACGTGTTTG.........................................................................................................................................................................................................2411.001.00-----1.00--------------------------------------------------------------------------------------------------
..................ATGAAGATCTGGAGCTCGGAGCACG...............................................................................................................................................................................................................2511.001.00-------------------1.00------------------------------------------------------------------------------------
...............GCAATGAAGATCTGGAGCTCGGA....................................................................................................................................................................................................................2311.001.00-----------------------1.00--------------------------------------------------------------------------------
.................................................................................................................................................................................................................................TCCCCGGGACCGCGGT.........1611.001.00---------------------------------------------------------------1.00----------------------------------------
..................ATGAAGATCTGGAGCTCGGAGCACGTG.............................................................................................................................................................................................................2711.001.00-1.00------------------------------------------------------------------------------------------------------
.......................................................................................................................CGGTCCAGGAAAGGCCGGACCTCACAGC.......................................................................................................2811.001.00-----------------------------------------1.00--------------------------------------------------------------
................CAATGAAGATCTGGAGCTCGGA....................................................................................................................................................................................................................2211.001.00-----------------------------------------------------------------------------1.00--------------------------
...........GGCGGCAATGAAGATCTGGAGC.........................................................................................................................................................................................................................2211.001.00-------------------------------------------------------------------1.00------------------------------------
...............................GCTCGGAGCACGTGTTTGGGT......................................................................................................................................................................................................2111.001.00---------------------------------------------------------------------1.00----------------------------------
.......................................CACGTGTTTGGGTGAGG..................................................................................................................................................................................................1711.001.00------------------------1.00-------------------------------------------------------------------------------
..................................................................................................................................................................................................................................CCCCGGGACCGCGGTCCGG.....191.000.00----------------------------------------------------------------------------1.00---------------------------
..............GGCAATGAAGATCTGGAGCTCGGAGCAC................................................................................................................................................................................................................2811.001.00---------------------------1.00----------------------------------------------------------------------------
...................................................................................................................................................................CCCGCCCCGCGCCGGCGGGG...................................................................201.000.00--------------1.00-----------------------------------------------------------------------------------------
.............CGGCAATGAAGATCTGGAGCTCGGT....................................................................................................................................................................................................................251.000.00---------------------------1.00----------------------------------------------------------------------------
.................................................................................................................................AAGGCCGGACCTCACAGC.......................................................................................................1811.001.00---------1.00----------------------------------------------------------------------------------------------
.......................GATCTGGAGCTCGGAGCC.................................................................................................................................................................................................................181.000.00---1.00----------------------------------------------------------------------------------------------------
...........................TGGAGCTCGGAGCACGTG.............................................................................................................................................................................................................1811.001.00------------------------------------1.00-------------------------------------------------------------------
..................ATGAAGATCTGGAGCTCTG.....................................................................................................................................................................................................................191.000.00-----------------------------------------------1.00--------------------------------------------------------
..................ATGAAGATCTGGAGCTCGGAGC..................................................................................................................................................................................................................2211.001.00---------1.00----------------------------------------------------------------------------------------------
.......................................................................CGGTGGGGCCGTCCAGACGCCGG............................................................................................................................................................2311.001.00---------------------------------1.00----------------------------------------------------------------------
......................AGATCTGGAGCTCGGAGCAC................................................................................................................................................................................................................2011.001.00-1.00------------------------------------------------------------------------------------------------------
...........GGCGGCAATGAAGATCTGG............................................................................................................................................................................................................................1911.001.00-------------------------------------------1.00------------------------------------------------------------
................................CTCGGAGCACGTGTTTGG........................................................................................................................................................................................................1811.001.001.00-------------------------------------------------------------------------------------------------------
.....................AAGATCTGGAGCTCGGAGCACGTG.............................................................................................................................................................................................................2411.001.00-------1.00------------------------------------------------------------------------------------------------
............GCGGCAATGAAGATCTGGAGCTCGGA....................................................................................................................................................................................................................2611.001.00---------------------------------------------------------------------------------1.00----------------------
....................GAAGATCTGGAGCTCGGAGCAC................................................................................................................................................................................................................2211.001.00-----------------------------------------------------------1.00--------------------------------------------
...........................................TGTTTGGGTGAGGCCGGGC............................................................................................................................................................................................1911.001.00--------1.00-----------------------------------------------------------------------------------------------
................................................GGGTGAGGCCGGGCTGAGGG......................................................................................................................................................................................2011.001.00-1.00------------------------------------------------------------------------------------------------------
.............................................TTTGGGTGAGGCCGGGCTG..........................................................................................................................................................................................1911.001.00------1.00-------------------------------------------------------------------------------------------------
.......................................................................................................CCGAGCCCGGCTGGAGCGGTCCT............................................................................................................................2311.003.00------------------1.00-------------------------------------------------------------------------------------
..........................CTGGAGCTCGGAGCAC................................................................................................................................................................................................................1611.001.00-----------1.00--------------------------------------------------------------------------------------------
........GCCGGCGGCAATGAAGATCTGGAGCTG.......................................................................................................................................................................................................................271.000.00------------------------------------------------------------------------1.00-------------------------------
....................................GAGCACGTGTTTGGGTGA....................................................................................................................................................................................................1811.001.00----------------1.00---------------------------------------------------------------------------------------
...........................................................................................................GCCCGGCTGGAGCGGTCCAGGAT........................................................................................................................231.000.00-------------------------1.00------------------------------------------------------------------------------
................................CTCGGAGCACGTGTTTGGGTG.....................................................................................................................................................................................................2111.001.00------------------------------------------------------------------1.00-------------------------------------
......................................................................................................CCCGAGCCCGGCTGGAG...................................................................................................................................1711.001.00---------------------1.00----------------------------------------------------------------------------------
.............CGGCAATGAAGATCTGGAGCTCGGAG...................................................................................................................................................................................................................2611.001.00----------------1.00---------------------------------------------------------------------------------------
................CAATGAAGATCTGGAGCT........................................................................................................................................................................................................................1811.001.00------------------------------------------------------------1.00-------------------------------------------
.....................AAGATCTGGAGCTCGGAGCACGTGT............................................................................................................................................................................................................2511.001.00--1.00-----------------------------------------------------------------------------------------------------
.....................................................................................................................................................................CGCCCCGCGCCGGCCGGGC..................................................................191.000.001.00-------------------------------------------------------------------------------------------------------
.................................................GGTGAGGCCGGGCTGAGGGC.....................................................................................................................................................................................2011.001.00--------1.00-----------------------------------------------------------------------------------------------
......................AGATCTGGAGCTCGGAGCACGTGT............................................................................................................................................................................................................2411.001.00--------------1.00-----------------------------------------------------------------------------------------
............GCGGCAATGAAGATCTGGAGCTC.......................................................................................................................................................................................................................2311.001.00----------------------------------------------------------------1.00---------------------------------------
..........................................................................TGGGGCCGTCCAGACGC...............................................................................................................................................................1711.001.00----------------------------1.00---------------------------------------------------------------------------
..................ATGAAGATCTGGAGCTCGGAGCC.................................................................................................................................................................................................................2311.001.00-1.00------------------------------------------------------------------------------------------------------
................CAATGAAGATCTGGAGCTCGGAGAACG...............................................................................................................................................................................................................271.000.00--------1.00-----------------------------------------------------------------------------------------------
..................................................................................................................TGGAGCGGTCCAGGAAAGG.....................................................................................................................1911.001.00------------------------------------------------1.00-------------------------------------------------------
.................................................GGTGAGGCCGGGCTGA.........................................................................................................................................................................................1621.001.00-----0.50---0.50----------------------------------------------------------------------------------------------
...............GCAATGAAGATCTGGAG..........................................................................................................................................................................................................................1720.500.50--------------------------------------------------------------------------------------------------0.50-----
........................ATCTGGAGCTCGGAG...................................................................................................................................................................................................................1540.500.50--------0.25--------------------------------------------------------------------------------------------0.25--
..................................................................................................................................................................CCCCGCCCCGCGCCGGCCG.....................................................................1920.500.50-------------0.50------------------------------------------------------------------------------------------
......................................................................................................................................................................................................CGGCGTCCCGGAGAGGG...................................1720.500.50-------------------0.50------------------------------------------------------------------------------------
....................GAAGATCTGGAGCTCGGAG...................................................................................................................................................................................................................1920.500.50------------------------------------------------------------------------------------------------0.50-------
.....................AAGATCTGGAGCTCGGA....................................................................................................................................................................................................................1720.500.50-------------------------------------------------------------------------------------------------0.50------
......................AGATCTGGAGCTCGGAG...................................................................................................................................................................................................................1720.500.50----------0.50---------------------------------------------------------------------------------------------
.......................GATCTGGAGCTCGGAG...................................................................................................................................................................................................................1630.330.33----------------------------0.33---------------------------------------------------------------------------
...................................................TGAGGCCGGGCTGAGGG......................................................................................................................................................................................1730.330.33---------------------------------------------------------------------------------------------0.33----------
.......................GATCTGGAGCTCGGA....................................................................................................................................................................................................................1530.330.33---------------------------------------------------------------------------------------------------0.33----
................................................................................................................................................................ATCCCCGCCCCGCGC...........................................................................1540.250.25------------------------------------------------------------------------------------------------------0.25-
................................................................................................................................................................ATCCCCGCCCCGCGCTCGC.......................................................................1940.250.25----------------------------------------------------------------------------------------------------0.25---
................................................................................................................................................................ATCCCCGCCCCGCGCGTT........................................................................1840.250.25-------------------------------------------------------------------------------------------------------0.25
..........................CTGGAGCTCGGAGCA.................................................................................................................................................................................................................1590.110.11--------0.11-----------------------------------------------------------------------------------------------

Antisense strand
CGCCCTGCGCCGGCGGCAATGAAGATCTGGAGCTCGGAGCACGTGTTTGGGTGAGGCCGGGCTGAGGGCCGCGGTGGGGCCGTCCAGACGCCGGCTCCTGCTCCCGAGCCCGGCTGGAGCGGTCCAGGAAAGGCCGGACCTCACAGCGGGCCTCGCGGAGATCCCCGCCCCGCGCCGGCCGTTCCCAGACCGCAACTTCGGCGTCCCGGAGAGGGCACGCGCGCTTCCCCGGGACCGCGGTCTGGGCGAG
..................................................((..(((((((((..(((..(((..(((((((.........)))))))))).))).)))))))))...))..................................................................................................................................
..................................................51............................................................................129.......................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189786SRR038852(GSM458535)
QF1160MB. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037936(GSM510474)
293cand1. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784SRR040041(GSM532926)
G612T. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR191462(GSM715572)
1genomic small RNA (size selected RNA from to. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR040016(GSM532901)
G645N. (cervix)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		GSM956925PAZD5SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		TAX577746(Rovira)
total RNA. (breast)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		TAX577739(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
...............................................................................................TCCAGCCGGGCTCGGGAGCAGGA.................................................................................................................................... 2312.002.00-----------------------------1.00--------------------------------------1.00-----------------------------------
.................................................................................................................................................................................................................AGAGGGCACGCGCGCTGGC...................... 191.000.00--------------------------------------------------------1.00-----------------------------------------------
.............................................................................................................................................................................AGTTGCGGTCTGGGAACGGCCGGC..................................................... 2411.001.00-----------1.00--------------------------------------------------------------------------------------------
.....................................................................................................................................................................CGCCCCGCGCCGGCCGACAG................................................................. 201.000.00-------------1.00------------------------------------------------------------------------------------------
...............................................................GAGGGCCGCGGTGGGGCCC........................................................................................................................................................................ 191.000.00--------------------------------1.00-----------------------------------------------------------------------
.......................................................................................................CCGCTCCAGCCGGGCTCGG................................................................................................................................ 1911.001.00---------------------1.00----------------------------------------------------------------------------------
.........................................................................................................................................................................................................................ACCGCGGTCCCGGGGAAGCGCGCG......... 2411.001.00-----------------------------------------------------------------------------------------1.00--------------
..............................AGCTCGGAGCACGTGGTCG......................................................................................................................................................................................................... 191.000.00-------------------------------1.00------------------------------------------------------------------------
...................................................................................................CCAGCCGGGCTCGGGAGC..................................................................................................................................... 1811.001.00------------------------1.00-------------------------------------------------------------------------------
................................................................................................................................................................ATCCCCGCCCCGCGCGTA........................................................................ 1841.000.00--------------------------------------------1.00-----------------------------------------------------------
...................................................................................................................................................................CGGCCGGCGCGGGGCGGG..................................................................... 1820.500.50-----------------------------------------------------------------------------------------------0.50--------
..........................................................................................................................................................................................................................CCCGGGGAAGCGCGC................. 1530.330.33--------------0.33-----------------------------------------------------------------------------------------