ID: uc002knr.2_intron_1_0_chr18_8717961_f
GENE: CCDC165(2)
chr18:8717911-8718471+


(1)
AGO2.ip 		(1)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(29)
CELL-LINE 		(1)
HEART 		(1)
HELA 		(3)
LIVER 		(3)
OTHER 		(6)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GTCAATGCTGAGATGCGTCTTGTGGAACAGAATTTTTGGGACATTTGCAGGTATGTTTTAGTTCCAGGGCAATTAGCACTTGTTATCCTACTGAAGTTTATGTTCTTTGAAGGCAGGGTCCGTATGATTCATCTTAGTACCTAGATTATGCCTTAGAGATAAAGGCTTAGGTCAATGTTTGGTTTGAATTGAAAGGTTCAATTATCTGCAGAGTTGATTTTATTTGATCATGTAGGGAGATGTTGGGAGTGGGATAAGTTCTGAGAGGCCACAATGAATAATCCAGTTTTTTAGCTTCTGGTTACATAAGATTTGAACAGATACTCAATTATATTATCTCATATGCAAATTTCCAGAGGTTCTGGTGCCTGTCACCCAGGCGTGGCCATGAGGTGATGGGTAAGCGTGTAGGTATTCAATATTTAGTATTGAGGAGCGGGTATGAAGGAGAGACATGCCATCCTTTTTTGATGTACTTGGCTCATAAATCTTCTCTGTCTGATTTGCATAGGATGAGTTAGATGAACTCCGTGCTGAGATGGAAGAGATGAGAGACAGTTA
...............................................................................................................................................................................................................................................................................................................................................................................................................(((((((..((((...(((((((...))))))).((((((((((((((((...........))))))......))))))).)))..........))))..)).)))))......................................................
.............................................................................................................................................................................................................................................................................................................................................................................................................398..............................................................................................................511................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR037931(GSM510469)
293GFP. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR029126(GSM416755)
143B. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189784SRR037936(GSM510474)
293cand1. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR343334SRR037935(GSM510473)
293cand3. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGTAGGTATTCAAA.............................................................................................................................................18351.000.00136.0037.0043.0023.0017.0013.0012.00-7.008.007.008.004.005.003.003.002.004.004.00-2.003.003.003.00--2.00-------1.00---------1.00-----
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGTAGGTATTCCAAA............................................................................................................................................1935.000.00-11.003.003.001.003.00--1.00-1.00-2.001.001.002.003.001.00--1.00----------1.00------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGTAGGTATTCTAA.............................................................................................................................................1811.000.0010.001.00------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGTAGGTATTCATA.............................................................................................................................................1810.000.005.001.00--2.001.00---1.00----------------------------------------
.......CTGAGATGCGTCTTGTAGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................209.000.00-------9.00------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGTAGGTATTCAAC.............................................................................................................................................184.000.004.00-------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGTAGGTATTCCAA.............................................................................................................................................184.000.003.00--1.00----------------------------------------------
..................................................................................................................................................................................................................GAGTTGATTTTATTTGATCATGTAGG.....................................................................................................................................................................................................................................................................................................................................2614.004.004.00-------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGTAGGTATTCAAG.............................................................................................................................................183.000.003.00-------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGTAGGTATTCAAT.............................................................................................................................................1813.003.001.001.00-1.00----------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGTAGGTATTCTTT.............................................................................................................................................182.000.002.00-------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGATGGAAGAGATGA..........1812.002.00---------------------------2.00----------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGTAGGTATTCCCA.............................................................................................................................................182.000.00--------1.00-----1.00-----------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTCCGTGCTGAGATGGAAGAG..............2511.001.00------------------------1.00-------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGATGGAAGAGATGAGAGACAG...2511.001.00--------------------------------1.00-----------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAACTCCGTGCTGAG.......................1911.001.00----------------------------------------1.00---------
.............................................................................................................................................................................................................................................................................................................................................................................................................GGGTAAGCGTGTAGGCCGT.................................................................................................................................................1911.001.00-------------------1.00------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................ACCCAGGCGTGGCCACGA..........................................................................................................................................................................181.000.00------------------------------------------1.00-------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCTCTGTCTGATGTTG......................................................201.000.00--------------------------------------1.00-----------
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGTAGGTATTCAGA.............................................................................................................................................181.000.001.00-------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATGAACTCCGTGCTGAGATGGAA.................2611.001.00------------------------1.00-------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGTAGGTATTCAAAA............................................................................................................................................181.000.00---1.00----------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCCGTGCTGAGATG....................1811.001.00---------------------------------------------1.00----
.................................................................................................................................CATCTTAGTACCTAGAGGAA............................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-----------------------------------------------1.00--
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGTAGGTATTCGAA.............................................................................................................................................181.000.001.00-------------------------------------------------
..................................................................................TTATCCTACTGAAGTCTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-------------------1.00------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAACTCCGTGCTGAGATGGAAGAG..............2811.001.00-------------------------------------------1.00------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATGAGTTAGATGAACT.................................1911.001.00----------------------------------------------1.00---
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGTAGGTATTCTAC.............................................................................................................................................181.000.001.00-------------------------------------------------
...................................................................................................................................................................................................................AGTTGATTTTATTTGATCATGTAGG.....................................................................................................................................................................................................................................................................................................................................2511.001.00----------------------------1.00---------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGTAGGTATTCTCA.............................................................................................................................................181.000.001.00-------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATGGAAGAGATGAGAGACAG...2411.001.00-------------------------------------1.00------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTAGATGAACTCCGTGCTGAGATG....................2611.001.00----------------------------1.00---------------------
.......CTGAGATGCGTCTTGTCGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-------1.00------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGAACTCCGTGCTGAGA......................2211.001.00---------------------------------1.00----------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAACTCCGTGCTGAGATGGAAGAGATGAGA........3411.001.00-------------------------1.00------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCAATATTTAGATTG...................................................................................................................................191.000.00-------------------1.00------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAACTCCGTGCTGAGATGGAAGAGATGAGAGA......3611.001.00-------------------------1.00------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................GGGTAAGCGTGTAGG.....................................................................................................................................................1511.001.00-----------------------------------------1.00--------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACTCCGTGCTGAGATG....................2111.001.00------------------------------------1.00-------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATGAACTCCGTGCTGAGATGGAAGA...............2911.001.00-----------------------------------1.00--------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATGAACTCCGTGCTGAGATGGA..................2511.001.00------------------------1.00-------------------------
.................................................................................................................................CATCTTAGTACCTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................1540.250.25------------------------------------------------0.25-

Antisense strand
GTCAATGCTGAGATGCGTCTTGTGGAACAGAATTTTTGGGACATTTGCAGGTATGTTTTAGTTCCAGGGCAATTAGCACTTGTTATCCTACTGAAGTTTATGTTCTTTGAAGGCAGGGTCCGTATGATTCATCTTAGTACCTAGATTATGCCTTAGAGATAAAGGCTTAGGTCAATGTTTGGTTTGAATTGAAAGGTTCAATTATCTGCAGAGTTGATTTTATTTGATCATGTAGGGAGATGTTGGGAGTGGGATAAGTTCTGAGAGGCCACAATGAATAATCCAGTTTTTTAGCTTCTGGTTACATAAGATTTGAACAGATACTCAATTATATTATCTCATATGCAAATTTCCAGAGGTTCTGGTGCCTGTCACCCAGGCGTGGCCATGAGGTGATGGGTAAGCGTGTAGGTATTCAATATTTAGTATTGAGGAGCGGGTATGAAGGAGAGACATGCCATCCTTTTTTGATGTACTTGGCTCATAAATCTTCTCTGTCTGATTTGCATAGGATGAGTTAGATGAACTCCGTGCTGAGATGGAAGAGATGAGAGACAGTTA
...............................................................................................................................................................................................................................................................................................................................................................................................................(((((((..((((...(((((((...))))))).((((((((((((((((...........))))))......))))))).)))..........))))..)).)))))......................................................
.............................................................................................................................................................................................................................................................................................................................................................................................................398..............................................................................................................511................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR037931(GSM510469)
293GFP. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR029126(GSM416755)
143B. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189784SRR037936(GSM510474)
293cand1. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR343334SRR037935(GSM510473)
293cand3. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
.........................................................................................................................................................................................................................................................TGGGATAAGTTCTGAGAG...................................................................................................................................................................................................................................................................................................... 183.000.00-----------------------------2.001.00-------------------
...........................................................................................................................................................................................................................................................................GCCACAATGAATAATTGGT................................................................................................................................................................................................................................................................................... 191.000.00---------------------------------------1.00----------
................................................................................................................................................................................................................................................TGTTGGGAGTGGGATACA............................................................................................................................................................................................................................................................................................................... 181.000.001.00-------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................GCTTACCCATCACCT............................................................................................................................................................ 1590.220.22-------------------------------------------------0.22