ID: uc002kng.1_intron_2_0_chr18_6926558_r.3p
GENE: LOC400643(3)
chr18:6926508-6926757-


(1)
AGO2.ip 		(2)
BRAIN 		(14)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(1)
HELA 		(2)
LIVER 		(1)
OTHER 		(3)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TTATTTGTAGAGACAAAGTCTATCTTGCCTAGGCTGATCTCGAACTCCTGGGCTCAAGTAATCCTCCCGCGGTGGCTTCTCAAAGTGCTTGGGATTACAGATGTAAGCTACCATGCCCGGCCTCACAGGAGACATTTTTGATGTCCCTCTTGACAGTCTACAAAAGTCTACAAATCTTTTTTTTTTTTTTTTTGAGACAGGGTCTTGCTCTGTCACCCAGTCTGGAATGCAGTGGTGCCATCATAGCTCA
.............................................................................((((((((.((.(((..((((....))))....))).))..(((.(((.(((.((((((...)))))))))..)))..)))...............................)))))))).....................................................
..........................................................................75...........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343336SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189785SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343337SRR040027(GSM532912)
G220T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
...........................................................................................................................................................................AAATCTTTTTTTTTTTTTTTTTCTCG.....................................................2625.000.0012.00--6.006.00-1.00-------------------------
...........................................................................................................................................................................AAATCTTTTTTTTTTTTTTTTCTCG......................................................2516.000.008.00--2.006.00---------------------------
..........................................................................................................................................................................CAAATCTTTTTTTTTTTTTTTTCTG.......................................................255.000.002.00--2.001.00---------------------------
...........................................................................................................................................................................AAATCTTTTTTTTTTTTTTTTTCCCG.....................................................264.000.001.00-1.00-1.00-1.00-------------------------
............................................................................................................TACCATGCCCGGCCTCACAGGAGACA....................................................................................................................2612.002.00-2.00------------------------------
.............................................................................................................................................................................ATCTTTTTTTTTTTTTTTTTGCGG.....................................................242.000.00--2.00-----------------------------
..................................................................................................................................................................................................................TGTCACCCAGTCTGGAATGCAGCGAG..............262.000.00--2.00-----------------------------
...............................................................................TCAAAGTGCTTGGGATTACAGATGTAAGC..............................................................................................................................................2912.002.00-2.00------------------------------
...........................................................................................................................................................................AAATCTTTTTTTTTTTTTTTTTCTCT.....................................................262.000.001.00-----1.00-------------------------
...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGTCGA............................................272.000.00--------2.00-----------------------
.TATTTGTAGAGACAAAGTCTATCTTGCCTA...........................................................................................................................................................................................................................3012.002.00-2.00------------------------------
.TATTTGTAGAGACAAAGTCTATCTTGCC.............................................................................................................................................................................................................................2812.002.00-2.00------------------------------
..........................................................................................................................................................................CAAATCTTTTTTTTTTTCTG............................................................202.000.00----1.00-1.00-------------------------
...............................................................................TCAAAGTGCTTGGGATTACAGATGT..................................................................................................................................................2512.002.00-2.00------------------------------
............................................................................................................................................................................AATCTTTTTTTTTTTTTTTTTGAGCGG...................................................271.000.00--1.00-----------------------------
.............................................................................................................................................................................ATCTTTTTTTTTTTTTTTTTGACGGG...................................................261.000.00--1.00-----------------------------
..........................................................................................................................................................................CAAATCTTTTTTTTTTTTTTCTCG........................................................241.000.00------1.00-------------------------
...........................................................................................................................................................................AAATCTTTTTTTTTTTTTTTTTCCGG.....................................................261.000.00--1.00-----------------------------
......GTAGAGACAAAGTCTATCTTGCCTAGGCTGT.....................................................................................................................................................................................................................311.000.00-1.00------------------------------
................................................................................CAAAGTGCTTGGGATTGGGA......................................................................................................................................................201.000.00----------------------1.00---------
................................................................................................................................................................................TTTTTTTTTTTTTTTTTGAGACAGGGCTAT............................................301.000.00-----------------------------1.00--
....................TATCTTGCCTAGGCTGATCTCGAACTC...........................................................................................................................................................................................................2711.001.00-1.00------------------------------
.............................................................................................................................................................................ATCTTTTTTTTTTTTTTTTTGAGCGG...................................................261.000.00-----1.00--------------------------
...........................................................................................................................................................................................................................GTCTGGAATGCAGTGG...............1601.001.00---------------------1.00----------
....................................ATCTCGAACTCCTGGGCTCAGGTA..............................................................................................................................................................................................241.000.00-----1.00--------------------------
.............................................................................................................................................................................ATCTTTTTTTTTTTTTTTTTGAGGTGT..................................................271.000.00--1.00-----------------------------
...........................................................................................................................................................................AAATCTTTTTTTTTTTTTTTTTCCG......................................................251.000.00---1.00----------------------------
....TTGTAGAGACAAAGTCTATCTTGCCT............................................................................................................................................................................................................................2611.001.00-1.00------------------------------
............................................................................................................................................................................................................................TCTGGAATGCAGTGGTGCCAAA........221.000.00-1.00------------------------------
...............................................................................................................................................................................CTTTTTTTTTTTTTTTTTGAGACAGGGTCCCC...........................................321.000.00---1.00----------------------------
...........................................................................................................................................................................................................................GTCTGGAATGCAGTGCGG.............181.000.00----------------------------1.00---
...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGACG.............................................261.000.00----1.00---------------------------
.........................................................................................................................................................................ACAAATCTTTTTTTTTTCTCG............................................................211.000.00---1.00----------------------------
..............................AGGCTGATCTCGAACTCCTGG.......................................................................................................................................................................................................2101.001.00-------1.00------------------------
...........................................................................................................................................................................................TTTTTTGAGACAGGGTCTTGAAG........................................231.000.00--------1.00-----------------------
....................................................................................................................CCGGCCTCACAGGAGACATTGA................................................................................................................221.000.00-1.00------------------------------
.............................TAGGCTGATCTCGAACTCCAGAA......................................................................................................................................................................................................231.000.00------------1.00-------------------
...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGGCGG............................................271.000.00--1.00-----------------------------
.....TGTAGAGACAAAGTCTATCTTGCCTAGGC........................................................................................................................................................................................................................2911.001.00-1.00------------------------------
......GTAGAGACAAAGTCTATCTTGCCTAGGC........................................................................................................................................................................................................................2811.001.00-1.00------------------------------
....................................................................................................................................................................................TTTTTTTTTTTTTGAGACAGGGGTTC............................................261.000.00-----1.00--------------------------
..........................................................................................................................................................................CAAATCTTTTTTTTTTTTTTTCTCG.......................................................251.000.00---1.00----------------------------
..........................................................................................................................................................................CAAATCTTTTTTTTTTTATG............................................................201.000.001.00-------------------------------
.............................................................................................................................................................................ATCTTTTTTTTTTTTTTTTTGAGACAGGCTGG.............................................321.000.00-----1.00--------------------------
...........................................................................................................................................................................AAATCTTTTTTTTTTTTTTTTTCTCC.....................................................261.000.00---1.00----------------------------
............................................................................................................TACCATGCCCGGCCTCACAGGAGAC.....................................................................................................................2511.001.00-1.00------------------------------
.........................................................................................................................................................................ACAAATCTTTTTTTTTTTTCTCA..........................................................231.000.00---------1.00----------------------
.TATTTGTAGAGACAAAGTCTATCTTGCCTAGG.........................................................................................................................................................................................................................3211.001.00-1.00------------------------------
.............................................................................................................................................................................ATCTTTTTTTTTTTTTTTTTGCGTT....................................................251.000.00-----1.00--------------------------
.................................................................................................................TGCCCGGCCTCACAGGAGACATTTTTGA.............................................................................................................2811.001.00-1.00------------------------------
..........................................................................................................................................................................CAAATCTTTTTTTTTTTTCTTG..........................................................221.000.00---1.00----------------------------
..........................................................................................................................................................................CAAATCTTTTTTTTTTTTCTCG..........................................................221.000.00---1.00----------------------------
..........................................................................................................................................................................CAAATCTTTTTTTTTTTTAG............................................................201.000.00---1.00----------------------------
...............................................CTGGGCTCAAGTAATCC..........................................................................................................................................................................................1701.001.00----------1.00---------------------
......................................................................................................................................................................TCTACAAATCTTTTTTTTTTTTTTTTTTG.......................................................291.000.00----1.00---------------------------
..........................................................................................................................................................................CAAATCTTTTTTTTTTTTTCTGG.........................................................231.000.001.00-------------------------------
..................................TGATCTCGAACTCCTGGGCTTTT.................................................................................................................................................................................................231.000.00------------------------1.00-------
..................................................................................................................................................................................TTTTTTTTTTTTTTTGAGACAGGGACCG............................................281.000.00--1.00-----------------------------
............................................................................................................................................................................AATCTTTTTTTTTTTTTTTTTGCCGG....................................................261.000.00--1.00-----------------------------
...................................................................................................................................................................................................................................TGCAGTGGTGCCATCATAGCTCATGC261.000.00-----1.00--------------------------
...........................................................................................................................................................................AAATCTTTTTTTTTTTTTTTTTCCC......................................................251.000.00--1.00-----------------------------
.................................CTGATCTCGAACTCCTGG.......................................................................................................................................................................................................1801.001.00-----------------1.00--------------
.........................................................................................................................................................................ACAAATCTTTTTTTTTTTTTTCAG.........................................................241.000.00------1.00-------------------------
...........................................ACTCCTGGGCTCAAGTACCCT..........................................................................................................................................................................................211.000.00-----1.00--------------------------
...........................................................................................................................................................................AAATCTTTTTTTTTTTTTTTTTGGGT.....................................................261.000.00--1.00-----------------------------
............................................................................................................................................................................................................................TCTGGAATGCAGTGGTGCCTTC........221.000.00-----------------------1.00--------
.............................................................................................................................................................................ATCTTTTTTTTTTTTTTTTTGCACC....................................................251.000.00--1.00-----------------------------
..............................................CCTGGGCTCAAGTAATCCTCCCTAC...................................................................................................................................................................................251.000.00----------------1.00---------------
......................................................................................................................................................................TCTACAAATCTTTTTTTTTTTTTTG...........................................................251.000.00----1.00---------------------------
.............................................................................................................................................................................ATCTTTTTTTTTTTTTTTTTGCCGG....................................................251.000.00--1.00-----------------------------
..........................................................................................................................................................................CAAATCTTTTTTTTTTTTTTTCTTG.......................................................251.000.00---1.00----------------------------
....................................ATCTCGAACTCCTGGGCTCAAGTACC............................................................................................................................................................................................261.000.00--1.00-----------------------------
.................................................................................................................................................................................TTTTTTTTTTTTTTTTGAGACAGGGGCCG............................................291.000.00-----1.00--------------------------
..................TCTATCTTGCCTAGGCTG......................................................................................................................................................................................................................1820.500.50-0.50------------------------------
............................................................................................................................................................................................................................TCTGGAATGCAGTGGTGCCATCATAGC...2720.500.50-0.50------------------------------
.................................................................................................CAGATGTAAGCTACCATGC......................................................................................................................................1980.120.12-------------------------------0.12
.TATTTGTAGAGACAAAGTC......................................................................................................................................................................................................................................1980.120.12-0.12------------------------------

Antisense strand
TTATTTGTAGAGACAAAGTCTATCTTGCCTAGGCTGATCTCGAACTCCTGGGCTCAAGTAATCCTCCCGCGGTGGCTTCTCAAAGTGCTTGGGATTACAGATGTAAGCTACCATGCCCGGCCTCACAGGAGACATTTTTGATGTCCCTCTTGACAGTCTACAAAAGTCTACAAATCTTTTTTTTTTTTTTTTTGAGACAGGGTCTTGCTCTGTCACCCAGTCTGGAATGCAGTGGTGCCATCATAGCTCA
.............................................................................((((((((.((.(((..((((....))))....))).))..(((.(((.(((.((((((...)))))))))..)))..)))...............................)))))))).....................................................
..........................................................................75...........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343336SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189785SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343337SRR040027(GSM532912)
G220T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
...............................GGCTGATCTCGAACTCCTGGCC..................................................................................................................................................................................................... 224.000.00--2.00--2.00--------------------------
......................................................................................................................................TTTTTGATGTCCCTCTTAG................................................................................................. 193.000.00-----------2.00---------------1.00----
...............................GGCTGATCTCGAACTCCTGACC..................................................................................................................................................................................................... 223.000.00--1.00--2.00--------------------------
..............................................................................................................................................................................................................TCCAGACTGGGTGACAGAGC........................ 2002.002.00-------2.00------------------------
..........................GCCTAGGCTGATCTCGAACTT........................................................................................................................................................................................................... 211.000.00---------1.00----------------------
...................................................................................................................................................................................................................GTCACCCAGTCTGGAATGCAGTG................ 231.000.00---------1.00----------------------
............................................GGAGGATTACTTGAGCCCAGGAG....................................................................................................................................................................................... 2301.001.00------------------1.00-------------
...............................GGCTGATCTCGAACTCGACC....................................................................................................................................................................................................... 201.000.00-----1.00--------------------------
...............................GGCTGATCTCGAACTCCTGAGC..................................................................................................................................................................................................... 221.000.00-----1.00--------------------------
................................GCTGATCTCGAACTCCTGAGC..................................................................................................................................................................................................... 211.000.00--------------------1.00-----------
...............................GGCTGATCTCGAACTCGGCC....................................................................................................................................................................................................... 201.000.00-----1.00--------------------------
..............................................................................................................................................................................................................CAGACTGGGTGACAGAGC.......................... 1801.001.00--------------1.00-----------------
..........................................................................................................................................................................................................TCTTGCTCTGTCACCCAGTCTGGAATGA.................... 281.000.00---------------1.00----------------
...............................GGCTGATCTCGAACTCGAC........................................................................................................................................................................................................ 191.000.00-------------1.00------------------
...............................................................................................................................................................................................................CCAGACTGGGTGACAGAG......................... 1801.001.00-------1.00------------------------
...........................................GAGGATTACTTGAGCCCAGGAGT........................................................................................................................................................................................ 2301.001.00----------1.00---------------------
...............................GGCTGATCTCGAACTCCTGGGCTGGAG................................................................................................................................................................................................ 271.000.00--1.00-----------------------------
......................................................................................................................................TTTTTGATGTCCCTCATCG................................................................................................. 191.000.00-------------------1.00------------
...............................GAGCCCAGGAGTTCGAGATCAGCC................................................................................................................................................................................................... 2401.001.00-------------------------1.00------
...............AAGTCTATCTTGCCTCTAA........................................................................................................................................................................................................................ 191.000.00--------------------------1.00-----
.................................CTGATCTCGAACTCCTGGGCTCAAGGCC............................................................................................................................................................................................. 281.000.00-----1.00--------------------------
........................................................................................................................................................................................................................CCAGTCTGGAATGCAGTGGTGCCATCGAG..... 291.000.00-----1.00--------------------------
...............................................................................................................................................................................................................CTCTGTCACCCAGTCTGG......................... 181.000.00-------1.00------------------------
.......................................................................................................................................................................................................ATTCCAGACTGGGTGACAGAGCAAGACCC...................... 2940.250.25------------------------------0.25-