ID: uc002kmz.3_intron_12_0_chr18_6241449_r.3p
GENE: (7)
chr18:6241399-6241648-


(1)
B-CELL
(2)
BRAIN
(9)
BREAST
(15)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(2)
HEART
(3)
LIVER
(6)
OTHER
(4)
SKIN
(1)
TESTES
(4)
UTERUS

Sense strand
ATCTTTTGTGGGTGCTAAGGACGTTGAATTTATGGCAGGACACTAATAATAACCATATGAGGTTGGTGCAAAAGTAATTGCGTTTTTTTTCCATTAAAAGTAATGGCCAAAACCGCACTTACTTTTGCACCAACCTAATATATTTAATATGCATGTGATTACATCTTTTGGGTATTTTGAGTAATCTGTGCTTTTTTTAGGTTATAGAAAAGATAAATTTGTTTGGATGGATTACTTGAAGGCCTGCAAA
.................................................................((((((((((((.((((.((((...((((((....))))))..)))).)))).))))))))))))........................................................................................................................
.................................................................66...............................................................131.....................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189787SRR037937(GSM510475)
293cand2. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189786SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR040042(GSM532927)
G428N. (cervix)
SRR189785SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577453(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM532880(GSM532880)
G659T. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR038858(GSM458541)
MEL202. (cell line)
TAX577741(Rovira)
total RNA. (breast)
TAX577742(Rovira)
total RNA. (breast)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335TAX577579(Rovira)
total RNA. (breast)
SRR029132(GSM416761)
MB-MDA231. (cell line)
TAX577589(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR029125(GSM416754)
U2OS. (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................AAAGTAATTGCGTTTTG...................................................................................................................................................................1713.000.0013.00-------------------------------------------------
.....................................................................AAAAGTAATTGCGTTTTG...................................................................................................................................................................187.000.005.002.00------------------------------------------------
...........................................................................................................CAAAACCGCACTTACTTTTG...........................................................................................................................2033.333.330.333.00------------------------------------------------
.....................................................................AAAAGTAATTGCGTTTCTG..................................................................................................................................................................193.000.003.00-------------------------------------------------
.....................................................................AAAAGTAATTGCGTTTTTGAC................................................................................................................................................................212.000.002.00-------------------------------------------------
..........................................................................................................CCAAAACCGCACTTACTTTA............................................................................................................................202.000.00--2.00-----------------------------------------------
.....................................................................AAAAGTAATTGCGTTTTACC.................................................................................................................................................................202.000.002.00-------------------------------------------------
.....................................................................AAAAGTAATTGCGTTTTGC..................................................................................................................................................................192.000.002.00-------------------------------------------------
.....................................................................AAAAGTAATTGCGTTCTTG..................................................................................................................................................................191.000.001.00-------------------------------------------------
....................................................................CAAAAGTAATTGCGTTTTTTGTA...............................................................................................................................................................231.000.00-----1.00--------------------------------------------
.....................................................................................................................................CCTAATATATTTAATTCAA..................................................................................................191.000.00-----------------1.00--------------------------------
.............................................................GTTGGTGCAAAAGTAATTGC.........................................................................................................................................................................2001.001.00-------------------------------1.00------------------
...........................................................................................................CAAAACCGCACTTACTTTGGCA.........................................................................................................................221.000.00-------1.00------------------------------------------
......................................................................AAAGTAATTGCGTTTTTGCCT...............................................................................................................................................................211.000.001.00-------------------------------------------------
......................................................................AAAGTAATTGCGTTTTGCC.................................................................................................................................................................191.000.001.00-------------------------------------------------
.....................................................................AAAAGTAATTGCGTTTTTTGAC...............................................................................................................................................................221.000.00----------------------------------------------1.00---
.....................................................................AAAAGTAATTGCGTTTTTTTTC...............................................................................................................................................................2211.001.00------------------------------------1.00-------------
.....................................................................AAAAGTAATTGCGTTTGTG..................................................................................................................................................................191.000.001.00-------------------------------------------------
...........................................................................................................CAAAACCGCACTTACTTTCT...........................................................................................................................201.000.001.00-------------------------------------------------
.............................................................................................................................................................................................................................TTTGGATGGATTACTTGAAGG........2111.001.00---------1.00----------------------------------------
.............................................................GTTGGTGCAAAAGTAATTGCGTC......................................................................................................................................................................231.000.00---------------------------------------1.00----------
...........................................................................AATTGCGTTTTTTTTAT..............................................................................................................................................................171.000.00-----------------1.00--------------------------------
.....................................................................AAAAGTAATTGCGTTTTTGA.................................................................................................................................................................201.000.001.00-------------------------------------------------
..........................................................................................................CCAAAACCGCACTTACTCTCG...........................................................................................................................211.000.00-1.00------------------------------------------------
.......................................................................................................................................................................................ATCTGTGCTTTTTTTCGT.................................................181.000.00---------------------1.00----------------------------
.....................................................................AAAAGTAATTGCGTTTTTATCT...............................................................................................................................................................221.000.00------------------1.00-------------------------------
....................................................................CAAAAGTAATTGCGTTCTTT..................................................................................................................................................................201.000.00---1.00----------------------------------------------
.....................................................................AAAAGTAATTGCGTTTATG..................................................................................................................................................................191.000.001.00-------------------------------------------------
..........................................................................................................CCAAAACCGCACTTACTTTAGA..........................................................................................................................221.000.00-----------------------------1.00--------------------
...........................................................................................................................................................................................................ATAGAAAAGATAAATTTGTTTG.........................2211.001.00---------1.00----------------------------------------
.............................................................GTTGGTGCAAAAGTAATGGC.........................................................................................................................................................................201.000.00--------------------1.00-----------------------------
................AAGGACGTTGAATTTATGGCA.....................................................................................................................................................................................................................2111.001.00---------------------------1.00----------------------
..........................................................................................................CCAAAACCGCACTTACTCTTG...........................................................................................................................211.000.00-1.00------------------------------------------------
...........................................................................................................CAAAACCGCACTTACTCTTG...........................................................................................................................201.000.00-1.00------------------------------------------------
.................................................................................................................................................................................................................................GATGGATTACTTGAAGGCCTGCA..2311.001.00----------------1.00---------------------------------
...............................................................................................................................................................................................................................TGGATGGATTACTTGAAGGCCTGC...2411.001.00--------------------------------1.00-----------------
.....................................................................AAAAGTAATTGCGTTTAG...................................................................................................................................................................181.000.001.00-------------------------------------------------
.....................................................................AAAAGTAATTGCGTTTTCGCC................................................................................................................................................................211.000.001.00-------------------------------------------------
.......................................................................................................................................................................................................................................TTACTTGAAGGCCTGCAAA1911.001.00----------------1.00---------------------------------
.........................................................................................................................................................................................................................TTTGTTTGGATGGATTACTTGAAGGCCTGCAAA3311.001.00--------------------------------------1.00-----------
......................................................................AAAGTAATTGCGTTTTGCCA................................................................................................................................................................201.000.001.00-------------------------------------------------
..........................................................................................................CCAAAACCGCACTTACTTCTGA..........................................................................................................................221.000.00----1.00---------------------------------------------
.....................................................................AAAAGTAATTGCGTTTTGCC.................................................................................................................................................................201.000.001.00-------------------------------------------------
......................................................................................................................................................................................................................AAATTTGTTTGGATGGATTACTTGAAG.........2711.001.00---------------------------------1.00----------------
.....................................................................AAAAGTAATTGCGTTTGGT..................................................................................................................................................................191.000.001.00-------------------------------------------------
......................................................................AAAGTAATTGCGTTTG....................................................................................................................................................................161.000.00-1.00------------------------------------------------
......................................................................AAAGTAATTGCGTTTCT...................................................................................................................................................................171.000.001.00-------------------------------------------------
.....................................................................AAAAGTAATTGCGTTTTAC..................................................................................................................................................................191.000.001.00-------------------------------------------------
.....................................................................AAAAGTAATTGCGTTTTTTGTT...............................................................................................................................................................221.000.00--------------------------1.00-----------------------
.......................................................................................................................................................................................................................AATTTGTTTGGATGGATTACTTGAAGGCC......2911.001.00---------1.00----------------------------------------
.............................................................................................................................................................................................................AGAAAAGATAAATTTGTTTGGATG.....................2411.001.00------------------------------------------1.00-------
...........................................................................................................CAAAACCGCACTTACTTTTGCA.........................................................................................................................2230.670.67-------0.67------------------------------------------
..........................................................................................................CCAAAACCGCACTTACTTTTG...........................................................................................................................2120.500.50-----------------------------------------------0.50--
..........................................................................................................CCAAAACCGCACTTACTTTTGC..........................................................................................................................2220.500.50----0.50---------------------------------------------
...........................................................................................................CAAAACCGCACTTACTTTTGT..........................................................................................................................2130.333.330.33-------------------------------------------------
...........................................................................................................CAAAACCGCACTTACTTTTGC..........................................................................................................................2130.330.33-0.33------------------------------------------------
.....................................................................................................................................CCTAATATATTTAATAT....................................................................................................1780.250.25------------------------------------------------0.25-
.............................................................................................................AAACCGCACTTACTTTTG...........................................................................................................................1850.200.200.20-------------------------------------------------
.................................................................................................................................CCAACCTAATATATTTA........................................................................................................1790.110.11-------------------------------------------------0.11

Antisense strand
ATCTTTTGTGGGTGCTAAGGACGTTGAATTTATGGCAGGACACTAATAATAACCATATGAGGTTGGTGCAAAAGTAATTGCGTTTTTTTTCCATTAAAAGTAATGGCCAAAACCGCACTTACTTTTGCACCAACCTAATATATTTAATATGCATGTGATTACATCTTTTGGGTATTTTGAGTAATCTGTGCTTTTTTTAGGTTATAGAAAAGATAAATTTGTTTGGATGGATTACTTGAAGGCCTGCAAA
.................................................................((((((((((((.((((.((((...((((((....))))))..)))).)))).))))))))))))........................................................................................................................
.................................................................66...............................................................131.....................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189787SRR037937(GSM510475)
293cand2. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189786SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR040042(GSM532927)
G428N. (cervix)
SRR189785SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577453(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM532880(GSM532880)
G659T. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR038858(GSM458541)
MEL202. (cell line)
TAX577741(Rovira)
total RNA. (breast)
TAX577742(Rovira)
total RNA. (breast)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335TAX577579(Rovira)
total RNA. (breast)
SRR029132(GSM416761)
MB-MDA231. (cell line)
TAX577589(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR029125(GSM416754)
U2OS. (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................................................................................................................................................................................................ATGGATTACTTGAAGGATA..... 1913.000.00--1.006.00----3.00----1.002.00-----------------------------------
.................................................................................................................................................................................................................................GATGGATTACTTGAAATA....... 185.000.00-----2.00-----1.00----------------1.00--------1.00------------
..................................................................................................................................................................................................................................ATGGATTACTTGAAGAGGC..... 194.000.00-------1.00-------2.00--------------1.00-------------------
.......................................................................................................................TACTTTTGCACCAACCTAAGA.............................................................................................................. 213.000.00----------2.00---------------------------------1.00-----
..................................................................................................................................................................................................................................ATGGATTACTTGAAGGGTA..... 193.000.00--3.00-----------------------------------------------
.................................................................................................................................................................................................................................GATGGATTACTTGAAATAG...... 193.000.001.00-----------1.00--------------------------------1.00----
......................................................................................TTTTCCATTAAAAGTCAAC................................................................................................................................................. 192.000.00-----2.00--------------------------------------------
..................................................................................................................................................................................................................................ATGGATTACTTGAAGAC....... 172.000.00------2.00-------------------------------------------
..........................................................................TAATTGCGTTTTTTTTTAT............................................................................................................................................................. 192.000.00-2.00------------------------------------------------
......................................................................................TTTTCCATTAAAAGTCAGC................................................................................................................................................. 192.000.00----------1.00-----------1.00---------------------------
.....................................................................AAAAGTAATTGCGTTTTTTG................................................................................................................................................................. 201.000.001.00-------------------------------------------------
................................................................................................................................................................................................................................GGATGGATTACTTGAATA........ 181.000.00-------------------------1.00------------------------
.................................................................................................................................................................................................................................GATGGATTACTTGAAACAT...... 191.000.00------------1.00-------------------------------------
................................................................................................................................................TAATATGCATGTGATGTT........................................................................................ 181.000.00-----------1.00--------------------------------------
..................................................................................................................................................................................................................................ATGGATTACTTGAAGGA....... 171.000.00--1.00-----------------------------------------------
...........................................................AGGTTGGTGCAAAAGTAATTCAT........................................................................................................................................................................ 231.000.00-----------------------------------------1.00--------
..................................................................................................................................................................................................................................ATGGATTACTTGAAGG........ 161.000.00------1.00-------------------------------------------
............................................................................................................................................................................................................TAGAAAAGATAAATTCAAG........................... 191.000.00-------------------------------------------1.00------
............................................................................................................AAAACCGCACTTACTTTTTCCC........................................................................................................................ 221.000.00-------1.00------------------------------------------
............................................................................................................AAAACCGCACTTACTTTTTTCC........................................................................................................................ 221.000.00----1.00---------------------------------------------
............................................................................................................AAAACCGCACTTACTTTTTGCT........................................................................................................................ 221.000.00----1.00---------------------------------------------
............................................................................................................AAAACCGCACTTACTTTTTT.......................................................................................................................... 201.000.00----------------------------------------1.00---------
.................................................................................................................................................................................................................................GATGGATTACTTGAAGATA...... 191.000.00-------------1.00------------------------------------
.................................................................................................................................................................................................................................GATGGATTACTTGAATTAT...... 191.000.00-------------------1.00------------------------------
..............................................................................................................AACCGCACTTACTTTTGGTG........................................................................................................................ 201.000.001.00-------------------------------------------------
.............................................................................................................AAACCGCACTTACTTTTGCC......................................................................................................................... 201.000.00----1.00---------------------------------------------
.........................................................................GTAATTGCGTTTTTTTTCCATGT.......................................................................................................................................................... 231.000.00-----------------------1.00--------------------------
.................................................................................................................................................................................................................................GATGGATTACTTGAATGA....... 181.000.00------------------------1.00-------------------------
................................................................................................................................................................................................TTTTTTAGGTTATAGTG......................................... 171.000.00----------------------------------1.00---------------
................................................................................................................................................................................................................................GGATGGATTACTTGAACCAG...... 201.000.00-----------------------------------1.00--------------
............................................................................................................AAAACCGCACTTACTTTTTGAC........................................................................................................................ 221.000.00----1.00---------------------------------------------
.................................................................................................................................................................................................................................GATGGATTACTTGAAATAT...... 191.000.001.00-------------------------------------------------
............................................................................................................AAAACCGCACTTACTTTTTCAC........................................................................................................................ 221.000.00----1.00---------------------------------------------
.................................................................................................................................................................................................................................GATGGATTACTTGAAGAG....... 181.000.00------1.00-------------------------------------------
...........................................................................................................AAAAGTAAGTGCGGTTTTG............................................................................................................................ 1930.330.330.33-------------------------------------------------
...............................................................................................TGCGGTTTTGGCCATTACTTTT..................................................................................................................................... 2250.200.200.20-------------------------------------------------