ID: uc002klu.2_intron_2_0_chr18_3456579_f.3p
GENE: (3)
chr18:3457163-3457412+


(1)
BRAIN 		(2)
BREAST 		(7)
CELL-LINE 		(2)
CERVIX 		(7)
HELA 		(2)
LIVER 		(2)
OTHER 		(5)
SKIN 		(1)
UTERUS 		(2)
XRN.ip

Sense strand
CTAGAAGGCTTATGACAGGTGGTAGCTTGCTTTCTTGGCGGAGCTCAGATACCTTGAAATAACATTGTAAATTCAGATAAGGCTTTTCATGCTTTCTTTAATTCAGAGAGCAAGATCAATTAGGTACCCCATAGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAGGTCTGTAACTGGTTCATCAACGCCCGCCGCAGGCTCCTCCCTGACATGCT
..........................................................................................................................(((((.......((((((((((..((.((.....)).))...))))))...)))).....)))))...............................................................
........................................................................................................................121...................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189784SRR040030(GSM532915)
G013N. (cervix)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		GSM532884(GSM532884)
G871T. (cervix)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343337
...................................................................................................................................TAGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAG..................................................691275.00275.00180.0085.008.00-2.00---------------------------
....................................................................................................................................AGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAG..................................................681113.00113.0074.0036.001.00-2.00---------------------------
.....................................................................................................................................GAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAG..................................................67163.0063.0042.0018.00-1.002.00---------------------------
...................................................................................................................................TAGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTC....................................................67130.0030.0029.00-1.00-----------------------------
.......................................................................................................................................ACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAG..................................................65123.0023.0016.007.00------------------------------
...................................................................................................................................TAGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCA...................................................68120.0020.0018.00-1.001.00----------------------------
.................................................................................................................................CATAGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAG..................................................71117.0017.005.009.00-2.001.00---------------------------
....................................................................................................................................AGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAGT.................................................69116.00113.0016.00-------------------------------
..................................................................................................................................ATAGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAG..................................................70116.0016.00-11.00-4.001.00---------------------------
..........................................................................................................................................TTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAG..................................................62114.0014.0014.00-------------------------------
...................................................................................................................................TAGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAGTT................................................71114.00275.0014.00-------------------------------
......................................................................................................................................AACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAGT.................................................6713.000.0013.00-------------------------------
...................................................................................................................................TAGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAGTTT...............................................72113.00275.0013.00-------------------------------
...................................................................................................................................TAGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAGT.................................................70112.00275.0012.00-------------------------------
....................................................................................................................................AGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTT.....................................................65112.0012.0011.001.00------------------------------
................................................................................................................................CCATAGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAGT.................................................7310.000.0010.00-------------------------------
..................................................................................................................................ATAGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCA...................................................69110.0010.0010.00-------------------------------
....................................................................................................................................AGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAT..................................................689.000.009.00-------------------------------
...................................................................................................................................TAGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTA.................................................................5418.008.008.00-------------------------------
...................................................................................................................................TAGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCT...................................................6818.0030.008.00-------------------------------
......................................................................................................................................AACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAGA.................................................677.000.007.00-------------------------------
........................................................................................................................................CATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAG..................................................6416.006.001.005.00------------------------------
.....................................................................................................................................GAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTC....................................................6516.006.006.00-------------------------------
....................................................................................................................................AGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCATT.................................................695.000.005.00-------------------------------
....................................................................................................................................AGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAGTT................................................7015.00113.004.001.00------------------------------
.....................................................................................................................................GAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCA...................................................6615.005.005.00-------------------------------
.................................................................................................................................CATAGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAGTT................................................7313.0017.003.00-------------------------------
...................................................................................................................................TAGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAGA.................................................7013.00275.00---3.00----------------------------
.........................................................................................................................................ATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAG..................................................6313.003.00-3.00------------------------------
...............................................................................................................................................................................TTAAAGCGTACCGATATGATTTCATTT................................................272.000.00-----2.00--------------------------
.............................................................................................................................ACCCCATAGAACATTCTCAGAA.......................................................................................................2212.002.00------2.00-------------------------
...................................................................................................................................TAGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTT.....................................................6612.002.00--1.00----------------1.00------------
...............................................................................................................................................AGAACCCGTTGGCTGAGTGAATG....................................................................................2311.001.00---------1.00----------------------
.....................................................................................................................................................................GAGGAAAATGTTAAAGCGTACCGATATGATTTCAG..................................................3511.001.00----------------------------1.00---
..................................................................................................................................ATAGAACATTCTCAGAACCCGTTGGC..............................................................................................2611.001.00----------1.00---------------------
..............................................................................................................................................................................................ATGATTTCAGGTCTGTATTT........................................201.000.00-----1.00--------------------------
........................................................................................ATGCTTTCTTTAATTCAGAGAGCAAG........................................................................................................................................2611.001.00-----------------1.00--------------
.......................................................................................................................................................TTGGCTGAGTGAATGAGGAAAATGT..........................................................................2511.001.00-------------------------1.00------
.....................................................................................................................................................................GAGGAAAATGTTAAAGCGTACCGATATGATTT.....................................................3211.001.00---------------------1.00----------
..........................................................................................................................................................GCTGAGTGAATGAGGAAAATGTTAAAGCGT..................................................................3011.001.00-------------1.00------------------
...............................................................................................................................................................GTGAATGAGGAAAATGTTAAAGCGTACCGATA...........................................................3211.001.00------------------1.00-------------
.............................................................................................................................................................................................TATGATTTCAGGTCTGTAACTCTG.....................................241.000.00----------------------1.00---------
.....................................................................................................................................................................................................................................CAGGCTCCTCCCTGACATGCT2111.001.00--------------------------1.00-----
....................................................................................................................................................................TGAGGAAAATGTTAAAGCGTACC...............................................................2311.001.00----------1.00---------------------
.....................................................................................................................................................................................................CAGGTCTGTAACTGGTTCATCAACGCCCGCCG.....................3211.001.00--------------1.00-----------------
.........................................................AATAACATTGTAAATCCCG..............................................................................................................................................................................191.000.00--------1.00-----------------------
................................................................................................................................................GAACCCGTTGGCTGAGTGAATTCTG.................................................................................251.000.00--------------------1.00-----------
......................................................................................................................................AACATTCTCAGAACCCGG..................................................................................................181.000.00-----------1.00--------------------
............................................................................................................AGCAAGATCAATTAGGTACCCCATAGAACATTCTCAGAACCCGTTGGC..............................................................................................4811.001.001.00-------------------------------
.....................................GCGGAGCTCAGATACGCG...................................................................................................................................................................................................181.000.00-----------------------------1.00--
..................................................................................................................................................ACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCA...................................................5311.001.00---1.00----------------------------
.......................................................................................................................................................TTGGCTGAGTGAATGAGGAA...............................................................................2011.001.00---------1.00----------------------
......................................................................................................................................................................................................AGGTCTGTAACTGGTTCATCAACGC...........................2520.500.50------------------------------0.50-

Antisense strand
CTAGAAGGCTTATGACAGGTGGTAGCTTGCTTTCTTGGCGGAGCTCAGATACCTTGAAATAACATTGTAAATTCAGATAAGGCTTTTCATGCTTTCTTTAATTCAGAGAGCAAGATCAATTAGGTACCCCATAGAACATTCTCAGAACCCGTTGGCTGAGTGAATGAGGAAAATGTTAAAGCGTACCGATATGATTTCAGGTCTGTAACTGGTTCATCAACGCCCGCCGCAGGCTCCTCCCTGACATGCT
..........................................................................................................................(((((.......((((((((((..((.((.....)).))...))))))...)))).....)))))...............................................................
........................................................................................................................121...................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189784SRR040030(GSM532915)
G013N. (cervix)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		GSM532884(GSM532884)
G871T. (cervix)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343337
.........................................................................................................................................................................................................................CAACGCCCGCCGCAGCGTC.............. 192.000.00-------2.00------------------------
.........................................................................................................................................................................................................................CAACGCCCGCCGCAGCGG............... 182.000.00------------1.00--1.00----------------
.........................................................................................................................................................................................................................CAACGCCCGCCGCAGCA................ 171.000.00----------------1.00---------------
.......................................................................................................................................................................................................................ATCAACGCCCGCCGCAACTG............... 201.000.00--------1.00-----------------------
..................................................................................................................................................................................................TTTCAGGTCTGTAACTGAGG.................................... 201.000.00------------------------1.00-------
.......................AGCTTGCTTTCTTGGCATC................................................................................................................................................................................................................ 191.000.00---------------------------1.00----
.........................................................................................................................................................................................................................CAACGCCCGCCGCAGCG................ 171.000.00-----------------------1.00--------
........ACCACCTGTCATAAG................................................................................................................................................................................................................................... 1540.250.25-------------------------------0.25