ID: uc002klp.2_intron_8_0_chr18_3086150_r.3p
GENE: (29)
chr18:3086100-3086349-


(1)
AGO2.ip 		(1)
AGO3.ip 		(1)
BRAIN 		(3)
BREAST 		(20)
CELL-LINE 		(3)
HEART 		(1)
HELA 		(2)
LIVER 		(4)
OTHER 		(6)
SKIN

Sense strand
AGGTTTATTCATTGGTGTCCACTTGATTCTAAACTCTTTTCTCAATTAAAATAGTTTTCAATTCATTCCTTTAGAAATCTGTGTCTTCTCACTCCACGTTCAGTGCTTTTTCTTTTATATCTTGCTGCATTAAGAACTATTCAACTTCACAAGAGTACACTTTCTTATTTTAAGAAAAGTAATTATGGTTTTTCTCCTAGGTGGCAAATATTAAGAAGGAGACTCATATTGTGTGGTACAAAGATGAGAG
....................................................................................................................................((((((((...((((.....))))..(((((((((...))))))).))....))))))))..........................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189786DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR189782SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037936(GSM510474)
293cand1. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR029124(GSM416753)
HeLa. (hela)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191476(GSM715586)
19genomic small RNA (size selected RNA from t. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................................................................................................................AAAAGTAATTATGGTTTTTTCT......................................................2218.000.00---4.00--4.003.00--1.002.00--1.00----------1.001.00-1.00-----------
..............................................................................................................................................................................AAAAGTAATTATGGTTTTTGC.......................................................2116.000.00-10.00---3.00------3.00---------------------------
..............................................................................................................................................................................AAAAGTAATTATGGTTTTCGCT......................................................2207.001.007.00---------------------------------------
..............................................................................................................................................................................................................AATATTAAGAAGGAGACT..........................1813.003.00----3.00-----------------------------------
..............................................................................................................................................................................AAAAGTAATTATGGTTTTTGCG......................................................223.000.001.00---------------2.00-----------------------
..............................................................................................................................................................................AAAAGTAATTATGGTTTTTG........................................................203.000.00-1.00---1.00---------------1.00------------------
..............................................................................................................................................................................AAAAGTAATTATGGTTTTTTC.......................................................213.000.00---1.00----------1.00---------------1.00---------
..............................................................................................................................................................................................................AATATTAAGAAGGAGACTC.........................1912.002.00-------------2.00--------------------------
..............................................................................................................................................................................AAAAGTAATTATGGTTTTTACT......................................................222.000.00----------2.00-----------------------------
..............................................................................................................................................................................AAAAGTAATTATGGTTTTTGGT......................................................222.000.00---------2.00------------------------------
.........................................................................................................................................TATTCAACTTCACAAGGACG.............................................................................................201.000.00--1.00-------------------------------------
......................................................................................................................ATCTTGCTGCATTAAGAA..................................................................................................................1811.001.00---------------------------------1.00------
...............................................................................................................................................................................AAAGTAATTATGGTTTGCT........................................................191.000.001.00---------------------------------------
...........................................................................................................................................................................................................GCAAATATTAAGAAGGAGACTCATATT....................2711.001.00--------1.00-------------------------------
..............................................................................................................................................................................AAAAGTAATTATGGTTTTTTTCT.....................................................231.000.00-------1.00--------------------------------
...............................................................................................................................................................................AAAGTAATTATGGTTTTTGC.......................................................201.000.00-1.00--------------------------------------
..............................................................................................................................................................................AAAAGTAATTATGGTTTT..........................................................1801.001.00-1.00--------------------------------------
..................................................................................................................................................................................GTAATTATGGTTTTTGC.......................................................171.000.00----------------------1.00-----------------
...............................................................................................................................................................................AAAGTAATTATGGTTTGCTT.......................................................201.000.001.00---------------------------------------
..................................................................................................................................................................................................................TTAAGAAGGAGACTCAT.......................1711.001.00-----------------------------------1.00----
.............................................................................................................................................................................................................AAATATTAAGAAGGAGACT..........................1911.001.00----1.00-----------------------------------
.................................................................................................................TTTATATCTTGCTGCATTAAG....................................................................................................................2111.001.00----1.00-----------------------------------
...............................................................................................................................................................................AAAGTAATTATGGTTTTTGGTA.....................................................221.000.00---------1.00------------------------------
....................................................................................................................ATATCTTGCTGCATTAGCCA..................................................................................................................201.000.00--------------------------------1.00-------
.............................................................................................................................................................................................................AAATATTAAGAAGGAGACTCATA......................2311.001.00--------1.00-------------------------------
.....................................................................................................................................................................................................................AGAAGGAGACTCATATTGT..................1911.001.00--------1.00-------------------------------
...............................................................................................................................................................................AAAGTAATTATGGTTTTCGCT......................................................211.000.00--------------------1.00-------------------
..............................................................................................................................................................................AAAAGTAATTATGGTTTTGGCC......................................................2201.001.00-----------------------------1.00----------
..............................................................................................................................................................................AAAAGTAATTATGGTTTTTCCC......................................................221.000.00---------------1.00------------------------
..............................................................................................................................................................................AAAAGTAATTATGGTTTTTGGTA.....................................................231.000.00----------------------------------1.00-----
...............................................................................................................................................................................AAAGTAATTATGGTTTTTGAT......................................................211.000.00------------------1.00---------------------
..............................................................................................................................................................................AAAAGTAATTATGGTTTTGGC.......................................................2101.001.00--1.00-------------------------------------
.................................................................................................................................TTAAGAACTATTCAAGTGC......................................................................................................191.000.00---------------------------1.00------------
............................................................................................................................................................................................................................GACTCATATTGTGTGAC.............171.000.00-------------------1.00--------------------
.........................................................................................................CTTTTTCTTTTATATCTTCTTT...........................................................................................................................221.000.00--------------------------------------1.00-
..............................................................................................................................................................................AAAAGTAATTATGGTTTCTGC.......................................................211.000.001.00---------------------------------------
..............................................................................................................................................................................AAAAGTAATTATGGTTTTTCAT......................................................221.000.00---------------1.00------------------------
..............................................................................................................................................................................AAAAGTAATTATGGTTTTGGCT......................................................2201.001.00-----------------------1.00----------------
..............................................................................................................................................................................AAAAGTAATTATGGTTTTTGTTT.....................................................231.000.001.00---------------------------------------
...................................................................................................................................................................................................................TAAGAAGGAGACTCA........................1590.110.11-------------0.11--------------------------

Antisense strand
AGGTTTATTCATTGGTGTCCACTTGATTCTAAACTCTTTTCTCAATTAAAATAGTTTTCAATTCATTCCTTTAGAAATCTGTGTCTTCTCACTCCACGTTCAGTGCTTTTTCTTTTATATCTTGCTGCATTAAGAACTATTCAACTTCACAAGAGTACACTTTCTTATTTTAAGAAAAGTAATTATGGTTTTTCTCCTAGGTGGCAAATATTAAGAAGGAGACTCATATTGTGTGGTACAAAGATGAGAG
....................................................................................................................................((((((((...((((.....))))..(((((((((...))))))).))....))))))))..........................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189786DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR189782SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037936(GSM510474)
293cand1. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR029124(GSM416753)
HeLa. (hela)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191476(GSM715586)
19genomic small RNA (size selected RNA from t. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................................................................................................................AAAAGTAATTATGGTTTTTGTAT..................................................... 232.000.00--2.00-------------------------------------
..............................................................................................................................................................................AAAAGTAATTATGGTTTTTG........................................................ 201.000.00------------------------1.00---------------
..............................................................................................................................................................................AAAAGTAATTATGGTTTTTGCAA..................................................... 231.000.00-----------1.00----------------------------
................GTCCACTTGATTCTATTTC....................................................................................................................................................................................................................... 191.000.00--1.00-------------------------------------
....................................................................................CTTCTCACTCCACGTTCAGTGA................................................................................................................................................ 221.000.00------------------------------------1.00---
................................................................................................................................................................................AAGTAATTATGGTTTTGCT....................................................... 191.000.00--1.00-------------------------------------
...............................................................................................................................................................................AAAGTAATTATGGTTTAG......................................................... 181.000.00--1.00-------------------------------------
..............................................................................................................................................................................AAAAGTAATTATGGTTTTTTCAC..................................................... 231.000.001.00---------------------------------------
....................................................................................CTTCTCACTCCACGTTCAGGC................................................................................................................................................. 211.000.00-------------------------------------1.00--
................................................................................................................................................................................AAGTAATTATGGTTTTGTG....................................................... 191.000.00-----------------1.00----------------------
.................................................................................................................................................................................AGTAATTATGGTTTTTATTG..................................................... 201.000.00--1.00-------------------------------------
...........................................................................................CTCCACGTTCAGTGCTTTTACA......................................................................................................................................... 221.000.001.00---------------------------------------
......ATTCATTGGTGTCCAGC................................................................................................................................................................................................................................... 171.000.00-------------------------------1.00--------
.....................................................AGGAATGAATTGAAAAC.................................................................................................................................................................................... 1720.500.50---------------------------------------0.50
.............................................................................................................................................................................AAAAACCATAATTACTTTTC......................................................... 2030.330.33--0.33-------------------------------------