ID: uc002kkt.3_intron_2_0_chr18_675403_r.3p
GENE: (13)
chr18:675353-675602-


(4)
BREAST 		(6)
CELL-LINE 		(6)
OTHER 		(3)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CACCTCACATTGCTATATTTTAGAAGAAAAGGACCTGAGGCACAGAGGTTTAGGGACTTGCCTAGAAACGCATGGTAACACAGCTAAGCCTTGGCCAACACTGTCAATTGAGTGGTACTCGCTCCTTCTGCTTTAAGTTAGCACCACGTGAATAATCTGACTTCAGGCATCATTGCCCCGATCTGATTCCCTCCTCCTAGGGTGTGTGAGTATGTTGACCACCTGCATGAGCATTTCAAGTATCCCGTGA
......................................................................................................................................((((((((((...)))......)))))))..((((....)))).........................................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR189783SRR037937(GSM510475)
293cand2. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR444063(SRX128911)
Sample 20cDNABarcode: AF-PP-333: ACG CTC TTC . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189787SRR189785SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)		SRR189786TAX577738(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........................................................................................................................................TAGCACCACGTGAATATTG.............................................................................................1920.000.0018.001.00-----1.00------------
..........................................................................................................................................TAGCACCACGTGAATATAG.............................................................................................1913.000.0012.001.00------------------
..........................................................................................................................................TAGCACCACGTGAATTTTG.............................................................................................1911.000.005.005.00------1.00-----------
..........................................................................................................................................TAGCACCACGTGAATTCAG.............................................................................................199.000.006.003.00------------------
..........................................................................................................................................TAGCACCACGTGAATACTG.............................................................................................199.000.006.002.00--------------1.00---
..........................................................................................................................................TAGCACCACGTGAATTTAG.............................................................................................196.000.004.002.00------------------
..........................................................................................................................................TAGCACCACGTGAATACAG.............................................................................................195.000.003.002.00------------------
..........................................................................................................................................TAGCACCACGTGAATATTT.............................................................................................195.000.004.001.00------------------
..........................................................................................................................................TAGCACCACGTGAATTCCG.............................................................................................193.000.001.002.00------------------
..........................................................................................................................................TAGCACCACGTGAATTCTG.............................................................................................193.000.002.001.00------------------
..........................................................................................................................................TAGCACCACGTGAATACCG.............................................................................................192.000.001.001.00------------------
..........................................................................................................................................TAGCACCACGTGAATACTGG............................................................................................202.000.00------------1.00----1.00--
..........................................................................................................................................TAGCACCACGTGAATCTAG.............................................................................................192.000.001.001.00------------------
..........................................................................................................................................TAGCACCACGTGAATATCG.............................................................................................192.000.001.001.00------------------
..........................................................................................................................................TAGCACCACGTGAATATGG.............................................................................................192.000.002.00-------------------
............CTATATTTTAGAAGAAAAGGAC........................................................................................................................................................................................................................2212.002.00----------2.00---------
...........................AAAGGACCTGAGGCACAGAGG..........................................................................................................................................................................................................2112.002.00------2.00-------------
..........................................................................................................................................TAGCACCACGTGAATTTG..............................................................................................182.000.001.001.00------------------
............................................................................................................................................GCACCACGTGAATAATCTGACTTCAGG...................................................................................2712.002.00----2.00---------------
..........................................................................................................................................TAGCACCACGTGAATATGGG............................................................................................202.000.00---------1.00-----1.00----
..........................................................................................................................................TAGCACCACGTGAATCTTG.............................................................................................192.000.00-2.00------------------
..........................................................................................................................................TAGCACCACGTGAATTGAG.............................................................................................192.000.002.00-------------------
..........................................................................................................................................TAGCACCACGTGAATACT..............................................................................................182.000.001.00--------1.00----------
..........................................................................................................................................TAGCACCACGTGAATAATG.............................................................................................192.000.001.00------1.00------------
.............................................................................ACACAGCTAAGCCTTGGCCAACACCG...................................................................................................................................................261.000.00---1.00----------------
..........................................................................................................................................TAGCACCACGTGAATACGG.............................................................................................191.000.001.00-------------------
..........................................................................................................................................TAGCACCACGTGAATTAAG.............................................................................................191.000.001.00-------------------
.............................AGGACCTGAGGCACAGAGGTTTAGGGACCTGC.............................................................................................................................................................................................321.000.00---1.00----------------
..........................................................................................................................................TAGCACCACGTGAATCATG.............................................................................................191.000.001.00-------------------
..................................................TAGGGACTTGCCTAGAAACGCATGGTAAC...........................................................................................................................................................................2911.001.00-----1.00--------------
..........................................................................................................................................TAGCACCACGTGAATTTCG.............................................................................................191.000.00-1.00------------------
..........................................................................................................................................TAGCACCACGTGAATACC..............................................................................................181.000.00-1.00------------------
..........................................................................................................................................TAGCACCACGTGAATGTAG.............................................................................................191.000.001.00-------------------
..........................................................................................................................................TAGCACCACGTGAATAAAG.............................................................................................191.000.00-1.00------------------
.............................AGGACCTGAGGCACAGAGGTTTAGGG...................................................................................................................................................................................................2611.001.00--1.00-----------------
..........................................................................................................................................TAGCACCACGTGAATATTA.............................................................................................191.000.001.00-------------------
..........................................................................................................................................TAGCACCACGTGAATTATG.............................................................................................191.000.001.00-------------------
..........................................................................................................................................TAGCACCACGTGAATACA..............................................................................................181.000.001.00-------------------
..........................................................................................................................................TAGCACCACGTGAATATG..............................................................................................181.000.001.00-------------------
.............TATATTTTAGAAGAAAAGGACCTGAGGCAC...............................................................................................................................................................................................................3011.001.00-----1.00--------------
..........................................................................................................................................TAGCACCACGTGAATTCA..............................................................................................181.000.00-1.00------------------
..........................................................................................................................................TAGCACCACGTGAATCTCG.............................................................................................191.000.00-1.00------------------
..........................................................................................................................................TAGCACCACGTGAATTGCG.............................................................................................191.000.001.00-------------------
.....................................................................................................................................................................................TCTGATTCCCTCCTCCGCCT.................................................201.000.001.00-------------------
...........................................................................TAACACAGCTAAGCCTTGGCCAACACCG...................................................................................................................................................281.000.00-----------1.00--------
..........................................................................................................................................TAGCACCACGTGAATATTC.............................................................................................191.000.00--------1.00-----------
..................................................TAGGGACTTGCCTAGAAACGCATGG...............................................................................................................................................................................2511.001.00-----1.00--------------
..........................................................................................................................................TAGCACCACGTGAATATCT.............................................................................................191.000.001.00-------------------
..........................................................................................................................................TAGCACCACGTGAATTCT..............................................................................................181.000.00-1.00------------------
..........................................................................................................................................TAGCACCACGTGAATTCGG.............................................................................................191.000.001.00-------------------
..........................................................................................................................................TAGCACCACGTGAATGTTG.............................................................................................191.000.001.00-------------------
..........................................................................................................................................TAGCACCACGTGAATCTGG.............................................................................................191.000.001.00-------------------
..........................................................................................................................................TAGCACCACGTGAATATCA.............................................................................................191.000.00-1.00------------------
..........................................................................................................................................TAGCACCACGTGAATCG...............................................................................................171.000.001.00-------------------
............................AAGGACCTGAGGCACAGAGGTC........................................................................................................................................................................................................221.000.00--1.00-----------------
..........................................................................................................................................TAGCACCACGTGAATTGCA.............................................................................................191.000.001.00-------------------
..........................................................................................................................................TAGCACCACGTGAATTCTT.............................................................................................191.000.00-1.00------------------
.....................................AGGCACAGAGGTTTAGGGACTTGCCCAG.........................................................................................................................................................................................281.000.00--1.00-----------------
..........................................................................................................................................TAGCACCACGTGAATCAG..............................................................................................181.000.001.00-------------------
.........................GAAAAGGACCTGAGGC.................................................................................................................................................................................................................1650.400.40------------------0.40-
..............................................................................................................................................................GACTTCAGGCATCAT.............................................................................1580.120.12-------------------0.12

Antisense strand
CACCTCACATTGCTATATTTTAGAAGAAAAGGACCTGAGGCACAGAGGTTTAGGGACTTGCCTAGAAACGCATGGTAACACAGCTAAGCCTTGGCCAACACTGTCAATTGAGTGGTACTCGCTCCTTCTGCTTTAAGTTAGCACCACGTGAATAATCTGACTTCAGGCATCATTGCCCCGATCTGATTCCCTCCTCCTAGGGTGTGTGAGTATGTTGACCACCTGCATGAGCATTTCAAGTATCCCGTGA
......................................................................................................................................((((((((((...)))......)))))))..((((....)))).........................................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR189783SRR037937(GSM510475)
293cand2. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR444063(SRX128911)
Sample 20cDNABarcode: AF-PP-333: ACG CTC TTC . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189787SRR189785SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)		SRR189786TAX577738(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................................AATTGAGTGGTACTCATTG.............................................................................................................................. 191.000.00-1.00------------------
.......................................CAAGTCCCTAAACCTCTGTGC.............................................................................................................................................................................................. 2111.001.00--------------1.00-----
................................................................................................................................................................TCGGGGCAATGATGCCTGAAG..................................................................... 2111.001.00----1.00---------------
...............TATTTTAGAAGAAAAGATAG....................................................................................................................................................................................................................... 201.000.00-------------1.00------
.......................AAGAAAAGGACCTGAAC.................................................................................................................................................................................................................. 171.000.00-----------1.00--------
..........................................................................................................................................................................................TTCCCTCCTCCTAGGGTGTGTGAGTATCCAG................................. 311.000.00---1.00----------------